Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

62615724 .. 62618951

Gene Structure 3228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G037960.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 204 bp

ATGGAAAAAAAAAAAAGAGTAAATTTTTTTTTGGTGTCAGTAAGGCTAACTGCTGCCAAAATTAATAACTTGATGTTCATTGTGGGAAATCCCCGCCAGTTCAAGATCCCTGACTGGTTTCTCAACGGCCTTCGTGTGCGTGGACAGCATAGCAAGACCATTGGCCACAGGGGGAAGATTGTTGGAGTGTCCAAGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

67

Amino Acids

7.76

Weight (kDa)

12.0

Isoelectric Point (pI)

0.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	94
AclWI	GGATC	1 cut(s)	100
AcoI	YGGCCR	1 cut(s)	163
AcsI	RAATTY	1 cut(s)	22
AgsI	TTSAA	1 cut(s)	103
AlwI	GGATC	1 cut(s)	100
AoxI	GGCC	2 cut(s)	127, 163
ApeKI	GCWGC	1 cut(s)	53
ApoI	RAATTY	1 cut(s)	22
AseI	ATTAAT	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	165
BbvI	GCAGC	1 cut(s)	40
BceAI	ACGGC	1 cut(s)	142
BisI	GCNGC	1 cut(s)	54
BlsI	GCNGC	1 cut(s)	55
Bse1I	ACTGG	2 cut(s)	97, 119
BseNI	ACTGG	2 cut(s)	97, 119
BseXI	GCAGC	1 cut(s)	40
BshFI	GGCC	2 cut(s)	129, 165
BsnI	GGCC	2 cut(s)	129, 165
Bsp143I	GATC	1 cut(s)	105
BspACI	CCGC	1 cut(s)	94
BspANI	GGCC	2 cut(s)	129, 165
BspPI	GGATC	1 cut(s)	100
BsrI	ACTGG	2 cut(s)	97, 119
BssMI	GATC	1 cut(s)	105
BstKTI	GATC	1 cut(s)	108
BstMBI	GATC	1 cut(s)	105
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstV1I	GCAGC	1 cut(s)	40
BstX2I	RGATCY	1 cut(s)	105
BstYI	RGATCY	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	129, 165
CviJI	RGCY	3 cut(s)	46, 129, 165
CviKI_1	RGCY	3 cut(s)	46, 129, 165
DpnI	GATC	1 cut(s)	107
DpnII	GATC	1 cut(s)	105
EaeI	YGGCCR	1 cut(s)	163
FaiI	YATR	1 cut(s)	150
FauI	CCCGC	1 cut(s)	101
Fnu4HI	GCNGC	1 cut(s)	54
Fsp4HI	GCNGC	1 cut(s)	54
GluI	GCNGC	1 cut(s)	54
HaeIII	GGCC	2 cut(s)	129, 165
Hpy166II	GTNNAC	1 cut(s)	143
Hpy188III	TCNNGA	1 cut(s)	103
Hpy8I	GTNNAC	1 cut(s)	143
HpyAV	CCTTC	1 cut(s)	140
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
Kzo9I	GATC	1 cut(s)	105
LpnPI	CCDG	4 cut(s)	100, 110, 123, 154
Lsp1109I	GCAGC	1 cut(s)	40
MalI	GATC	1 cut(s)	107
MboI	GATC	1 cut(s)	105
MboII	GAAGA	1 cut(s)	187
MflI	RGATCY	1 cut(s)	105
MlsI	TGGCCA	1 cut(s)	165
MluCI	AATT	2 cut(s)	22, 60
MluNI	TGGCCA	1 cut(s)	165
MmeI	TCCRAC	1 cut(s)	163
Mox20I	TGGCCA	1 cut(s)	165
MscI	TGGCCA	1 cut(s)	165
MseI	TTAA	1 cut(s)	63
Msp20I	TGGCCA	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	145
NdeII	GATC	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	55
PshBI	ATTAAT	1 cut(s)	63
PsuI	RGATCY	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	54
Sau3AI	GATC	1 cut(s)	105
Sse9I	AATT	2 cut(s)	22, 60
SsiI	CCGC	1 cut(s)	94
TasI	AATT	2 cut(s)	22, 60
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TseI	GCWGC	1 cut(s)	53
TspDTI	ATGAA	1 cut(s)	67
VspI	ATTAAT	1 cut(s)	63
XapI	RAATTY	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.