Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

19248495 .. 19250586

Gene Structure 2092 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15530.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCATCGTCTTCTTCACTCGCCCCTTCTCTCACCAAACGGCGCACACACCCACACGCAGAGACTCCCAGAGCGCAGAAGCCAAACCCTAAAGCCGCCGCCGCAACCATGTCTCTCGTAGCGAACGAGGAGTTCCAGCATATTCTGCGTGTGATGAACACCAACGTCGATGGGAAGCAGAAGATCATGTTTGCTCTCACCTCTATCAAAGGTATCGGTCGCCGTCTCGCTAACATCGTCTGCAAGAAGGCCGACGTCGACATGAACAAGAGGGCTGGAGAGCTGTCTGCTCAGGAGATTGAGAACCTGATGCACATTGTGGCAAATCCCCGCCAGTTCAAGATTCCTGACTGGTTTCTCAACAGAAAGAAAGACTACAAAGATGGTAAATATTCCCAGGTTGTTGCCAATGCCTTGGACATGAAGCTCAGGGATGATCTCGAGAGGCTCAAGAAGATCAGGAATCACCGTGGTCTGCGTCACTACTGGGGCCTTCGTGTGCGTGGACAGCACACCAAGACCACTGGTCGCAGGGGTAAGACTGTTGGTGTGTCCAAGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

189

Amino Acids

21.43

Weight (kDa)

10.82

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	50 - 178	1.3e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	258
AccI	GTMKAC	1 cut(s)	258
AciI	CCGC	4 cut(s)	96, 99, 102, 331
AcyI	GRCGYC	1 cut(s)	255
AdeI	CACNNNGTG	1 cut(s)	319
AgsI	TTSAA	1 cut(s)	340
AhdI	GACNNNNNGTC	1 cut(s)	525
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	2 cut(s)	283, 427
AluI	AGCT	2 cut(s)	283, 427
Alw26I	GTCTC	3 cut(s)	56, 117, 230
Ama87I	CYCGRG	1 cut(s)	440
AoxI	GGCC	2 cut(s)	249, 490
AspLEI	GCGC	2 cut(s)	45, 76
AspS9I	GGNCC	1 cut(s)	490
AsuHPI	GGTGA	3 cut(s)	25, 190, 458
AvaI	CYCGRG	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	3
BccI	CCATC	3 cut(s)	13, 164, 377
BceAI	ACGGC	2 cut(s)	56, 207
BciT130I	CCWGG	1 cut(s)	398
BcoDI	GTCTC	3 cut(s)	56, 117, 230
BisI	GCNGC	3 cut(s)	96, 99, 102
BlsI	GCNGC	3 cut(s)	97, 100, 103
Bme1390I	CCNGG	1 cut(s)	398
BmeRI	GACNNNNNGTC	1 cut(s)	525
BmeT110I	CYCGRG	1 cut(s)	440
BmgT120I	GGNCC	1 cut(s)	490
BmiI	GGNNCC	1 cut(s)	491
BmrFI	CCNGG	1 cut(s)	398
BmrI	ACTGGG	1 cut(s)	496
BmsI	GCATC	1 cut(s)	300
BmuI	ACTGGG	1 cut(s)	496
BpiI	GAAGAC	1 cut(s)	3
BpmI	CTGGAG	1 cut(s)	297
Bpu10I	CCTNAGC	2 cut(s)	291, 428
BpuEI	CTTGAG	1 cut(s)	434
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	396, 414, 469
Bse1I	ACTGG	4 cut(s)	334, 356, 491, 529
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	3 cut(s)	396, 414, 469
BseGI	GGATG	1 cut(s)	439
BseMII	CTCAG	2 cut(s)	305, 442
BseNI	ACTGG	4 cut(s)	334, 356, 491, 529
BseRI	GAGGAG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	220
BshFI	GGCC	2 cut(s)	251, 492
BsiEI	CGRYCG	1 cut(s)	220
BsiHKCI	CYCGRG	1 cut(s)	440
BsmAI	GTCTC	3 cut(s)	56, 117, 230
BsmBI	CGTCTC	1 cut(s)	230
BsnI	GGCC	2 cut(s)	251, 492
BsoBI	CYCGRG	1 cut(s)	440
Bsp143I	GATC	3 cut(s)	183, 436, 456
BspACI	CCGC	4 cut(s)	96, 99, 102, 331
BspANI	GGCC	2 cut(s)	251, 492
BspCNI	CTCAG	2 cut(s)	304, 441
BspLI	GGNNCC	1 cut(s)	491
BsrI	ACTGG	4 cut(s)	334, 356, 491, 529
BssECI	CCNNGG	3 cut(s)	396, 414, 469
BssMI	GATC	3 cut(s)	183, 436, 456
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	1 cut(s)	414
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	470, 544
BstACI	GRCGYC	1 cut(s)	255
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstDEI	CTNAG	2 cut(s)	291, 428
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	1 cut(s)	439
BstHHI	GCGC	2 cut(s)	45, 76
BstKTI	GATC	3 cut(s)	186, 439, 459
BstMAI	GTCTC	3 cut(s)	56, 117, 230
BstMBI	GATC	3 cut(s)	183, 436, 456
BstMCI	CGRYCG	1 cut(s)	220
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 145, 508
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	1 cut(s)	396
BstV2I	GAAGAC	1 cut(s)	3
BstXI	CCANNNNNNTGG	1 cut(s)	415
BsuRI	GGCC	2 cut(s)	251, 492
BtgI	CCRYGG	1 cut(s)	469
BtsCI	GGATG	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	522
CfoI	GCGC	2 cut(s)	45, 76
Cfr13I	GGNCC	1 cut(s)	490
CseI	GACGC	1 cut(s)	467
CviAII	CATG	4 cut(s)	109, 187, 262, 421
CviJI	RGCY	8 cut(s)	82, 95, 251, 275, 283, 427, 448, 492
CviKI_1	RGCY	8 cut(s)	82, 95, 251, 275, 283, 427, 448, 492
DdeI	CTNAG	2 cut(s)	291, 428
DpnI	GATC	3 cut(s)	185, 438, 458
DpnII	GATC	3 cut(s)	183, 436, 456
DraIII	CACNNNGTG	1 cut(s)	319
DriI	GACNNNNNGTC	1 cut(s)	525
Eam1105I	GACNNNNNGTC	1 cut(s)	525
Eco130I	CCWWGG	1 cut(s)	414
Eco88I	CYCGRG	1 cut(s)	440
EcoO109I	RGGNCCY	1 cut(s)	490
EcoRII	CCWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
Esp3I	CGTCTC	1 cut(s)	230
FaeI	CATG	4 cut(s)	112, 190, 265, 424
FaiI	YATR	5 cut(s)	110, 141, 188, 263, 422
FatI	CATG	4 cut(s)	108, 186, 261, 420
FauI	CCCGC	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	258
Fnu4HI	GCNGC	3 cut(s)	96, 99, 102
FokI	GGATG	1 cut(s)	446
Fsp4HI	GCNGC	3 cut(s)	96, 99, 102
GlaI	GCGC	2 cut(s)	44, 75
GluI	GCNGC	3 cut(s)	96, 99, 102
GsuI	CTGGAG	1 cut(s)	297
HaeIII	GGCC	2 cut(s)	251, 492
HgaI	GACGC	1 cut(s)	467
HhaI	GCGC	2 cut(s)	45, 76
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	4 cut(s)	112, 190, 265, 424
Hin6I	GCGC	2 cut(s)	43, 74
HinP1I	GCGC	2 cut(s)	43, 74
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
HinfI	GANTC	3 cut(s)	64, 343, 463
HphI	GGTGA	3 cut(s)	25, 190, 458
Hpy166II	GTNNAC	2 cut(s)	259, 506
Hpy188III	TCNNGA	7 cut(s)	293, 340, 347, 440, 442, 451, 460
Hpy8I	GTNNAC	2 cut(s)	259, 506
Hpy99I	CGWCG	3 cut(s)	170, 257, 260
HpyAV	CCTTC	3 cut(s)	36, 241, 503
HpyCH4III	ACNGT	2 cut(s)	470, 544
HpyCH4IV	ACGT	2 cut(s)	165, 255
HpyCH4V	TGCA	2 cut(s)	243, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 145, 508
HpyF3I	CTNAG	2 cut(s)	291, 428
HpySE526I	ACGT	2 cut(s)	165, 255
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	4 cut(s)	112, 190, 265, 424
HspAI	GCGC	2 cut(s)	43, 74
Kzo9I	GATC	3 cut(s)	183, 436, 456
LweI	GCATC	1 cut(s)	300
MaeII	ACGT	2 cut(s)	165, 255
MaeIII	GTNAC	1 cut(s)	479
MalI	GATC	3 cut(s)	185, 438, 458
MboI	GATC	3 cut(s)	183, 436, 456
MboII	GAAGA	4 cut(s)	3, 6, 193, 466
MlyI	GAGTC	1 cut(s)	58
MnlI	CCTC	4 cut(s)	121, 211, 264, 438
MspR9I	CCNGG	1 cut(s)	398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	3 cut(s)	101, 145, 508
NdeII	GATC	3 cut(s)	183, 436, 456
NlaIII	CATG	4 cut(s)	112, 190, 265, 424
NlaIV	GGNNCC	1 cut(s)	491
NmuCI	GTSAC	1 cut(s)	479
PaeR7I	CTCGAG	1 cut(s)	440
PcsI	WCGNNNNNNNCGW	2 cut(s)	123, 234
PfeI	GAWTC	2 cut(s)	343, 463
PkrI	GCNGC	3 cut(s)	97, 100, 103
PleI	GAGTC	1 cut(s)	58
PpsI	GAGTC	1 cut(s)	58
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	491
PspPI	GGNCC	1 cut(s)	490
SalI	GTCGAC	1 cut(s)	257
SatI	GCNGC	3 cut(s)	96, 99, 102
Sau3AI	GATC	3 cut(s)	183, 436, 456
Sau96I	GGNCC	1 cut(s)	490
SchI	GAGTC	1 cut(s)	58
ScrFI	CCNGG	1 cut(s)	398
SetI	ASST	8 cut(s)	168, 203, 214, 258, 285, 309, 402, 429
SfaNI	GCATC	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	440
SmlI	CTYRAG	2 cut(s)	440, 449
SmoI	CTYRAG	2 cut(s)	440, 449
SsiI	CCGC	4 cut(s)	96, 99, 102, 331
SspI	AATATT	1 cut(s)	392
StyD4I	CCNGG	1 cut(s)	396
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	470, 544
TaiI	ACGT	2 cut(s)	168, 258
TaqI	TCGA	3 cut(s)	168, 258, 441
TaqII	GACCGA	1 cut(s)	206
TauI	GCSGC	3 cut(s)	98, 101, 104
TfiI	GAWTC	2 cut(s)	343, 463
TscAI	CASTG	1 cut(s)	529
TseFI	GTSAC	1 cut(s)	479
Tsp45I	GTSAC	1 cut(s)	479
TspDTI	ATGAA	3 cut(s)	170, 278, 437
TspRI	CASTG	1 cut(s)	529
XhoI	CTCGAG	1 cut(s)	440
XmiI	GTMKAC	1 cut(s)	258
ZraI	GACGTC	1 cut(s)	256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.