Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

1018152 .. 1020255

Gene Structure 2104 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G013500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGATGGACGGCTACGAATTCATCAATAAGGAGTGCACATATAATCCTTTAAATCCATCTTTTTCTTTCACTGGCCCTCTCTCACCCGGCGCGCTTGCACACACACACGCAGAGTCGCAGAGAGAGAGAGCAAACCCTAACGCCGCAACAATGTCTCTCGTCGCAAATGAGGAGTTCCAGCATATTCTGCGTGTGCTGAACACCAACGTCGATGGAAAGCAGAAGATCATGTTCGCTCTCACCTCCATCAAGGGTATTGGGAGACGTTTCGCCAACATCGTCTGCAAGAAGGCCGACGTAGACATGAACAAAAGGGCTGGTGAGCTATCTGCCGCTGAGCTCGACAACCTGATGACCATCGTGGCCAACCCACGCCAGTTCAAGATCCCTGACTGGTTTCTGAACAGAAAGAAGGACTACAAGGATGGTAAATATTCTCAGGTCGTCTCCAATGCTCTGGACATGAAGCTCAGGGATGACCTTGAGCGCTTGAAGAAGATCAGGAATCACCGTGGTCTTCGACACTACTGGGGTCTTCGTGTGCGTGGACAGCACACCAAGACCACTGGCCGCAGGGGGAAGACTGTTGGTGTCTCCAAGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

203

Amino Acids

23.05

Weight (kDa)

10.14

Isoelectric Point (pI)

31.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	144, 333, 571
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	2 cut(s)	363, 568
AcsI	RAATTY	1 cut(s)	17
AfeI	AGCGCT	1 cut(s)	488
AgsI	TTSAA	2 cut(s)	382, 493
AluBI	AGCT	3 cut(s)	325, 340, 469
AluI	AGCT	3 cut(s)	325, 340, 469
Alw21I	GWGCWC	2 cut(s)	38, 342
Alw26I	GTCTC	4 cut(s)	159, 256, 451, 598
Alw44I	GTGCAC	1 cut(s)	34
AlwI	GGATC	1 cut(s)	379
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	4 cut(s)	73, 291, 363, 568
ApaLI	GTGCAC	1 cut(s)	34
ApoI	RAATTY	1 cut(s)	17
AspLEI	GCGC	3 cut(s)	92, 94, 489
AspS9I	GGNCC	1 cut(s)	74
AsuC2I	CCSGG	1 cut(s)	87
AsuHPI	GGTGA	4 cut(s)	75, 232, 332, 500
BaeGI	GKGCMC	1 cut(s)	38
BalI	TGGCCA	1 cut(s)	365
BanII	GRGCYC	1 cut(s)	342
BbsI	GAAGAC	3 cut(s)	509, 527, 587
Bbv12I	GWGCWC	2 cut(s)	38, 342
BccI	CCATC	5 cut(s)	64, 206, 254, 365, 419
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	1 cut(s)	87
BcoDI	GTCTC	4 cut(s)	159, 256, 451, 598
BfoI	RGCGCY	1 cut(s)	490
BisI	GCNGC	3 cut(s)	144, 333, 571
BlpI	GCTNAGC	1 cut(s)	336
BlsI	GCNGC	3 cut(s)	145, 334, 572
Bme1390I	CCNGG	1 cut(s)	87
BmgT120I	GGNCC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	87
BmrI	ACTGGG	1 cut(s)	538
BmuI	ACTGGG	1 cut(s)	538
BpiI	GAAGAC	3 cut(s)	509, 527, 587
Bpu10I	CCTNAGC	1 cut(s)	470
Bpu1102I	GCTNAGC	1 cut(s)	336
BpuEI	CTTGAG	1 cut(s)	503
BpuMI	CCSGG	1 cut(s)	87
BsaBI	GATNNNNATC	1 cut(s)	356
BsaJI	CCNNGG	1 cut(s)	511
Bse1I	ACTGG	5 cut(s)	76, 376, 398, 533, 571
Bse8I	GATNNNNATC	1 cut(s)	356
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	2 cut(s)	430, 481
BseJI	GATNNNNATC	1 cut(s)	356
BseMII	CTCAG	3 cut(s)	327, 452, 484
BseNI	ACTGG	5 cut(s)	76, 376, 398, 533, 571
BsePI	GCGCGC	1 cut(s)	90
BseRI	GAGGAG	1 cut(s)	185
BseSI	GKGCMC	1 cut(s)	38
Bsh1236I	CGCG	1 cut(s)	92
BshFI	GGCC	4 cut(s)	75, 293, 365, 570
BsiHKAI	GWGCWC	2 cut(s)	38, 342
BsiSI	CCGG	1 cut(s)	87
BsmAI	GTCTC	4 cut(s)	159, 256, 451, 598
BsmBI	CGTCTC	2 cut(s)	256, 451
BsnI	GGCC	4 cut(s)	75, 293, 365, 570
Bsp1286I	GDGCHC	2 cut(s)	38, 342
Bsp143I	GATC	3 cut(s)	225, 384, 498
Bsp1720I	GCTNAGC	1 cut(s)	336
BspACI	CCGC	3 cut(s)	144, 333, 571
BspANI	GGCC	4 cut(s)	75, 293, 365, 570
BspCNI	CTCAG	3 cut(s)	328, 451, 483
BspFNI	CGCG	1 cut(s)	92
BspPI	GGATC	1 cut(s)	379
BsrI	ACTGG	5 cut(s)	76, 376, 398, 533, 571
BssECI	CCNNGG	1 cut(s)	511
BssHII	GCGCGC	1 cut(s)	90
BssMI	GATC	3 cut(s)	225, 384, 498
Bst4CI	ACNGT	2 cut(s)	512, 586
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstC8I	GCNNGC	2 cut(s)	92, 96
BstDEI	CTNAG	3 cut(s)	336, 438, 470
BstDSI	CCRYGG	1 cut(s)	511
BstF5I	GGATG	2 cut(s)	430, 481
BstFNI	CGCG	1 cut(s)	92
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	3 cut(s)	92, 94, 489
BstKTI	GATC	3 cut(s)	228, 387, 501
BstMAI	GTCTC	4 cut(s)	159, 256, 451, 598
BstMBI	GATC	3 cut(s)	225, 384, 498
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 550
BstSCI	CCNGG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	38
BstUI	CGCG	1 cut(s)	92
BstV2I	GAAGAC	3 cut(s)	509, 527, 587
BstX2I	RGATCY	1 cut(s)	384
BstXI	CCANNNNNNTGG	1 cut(s)	457
BstYI	RGATCY	1 cut(s)	384
BsuRI	GGCC	4 cut(s)	75, 293, 365, 570
BtgI	CCRYGG	1 cut(s)	511
BtsCI	GGATG	2 cut(s)	430, 481
BtsIMutI	CAGTG	2 cut(s)	69, 564
Cac8I	GCNNGC	2 cut(s)	92, 96
CfoI	GCGC	3 cut(s)	92, 94, 489
Cfr13I	GGNCC	1 cut(s)	74
CviAII	CATG	3 cut(s)	229, 304, 463
CviJI	RGCY	9 cut(s)	12, 75, 293, 317, 325, 340, 365, 469, 570
CviKI_1	RGCY	9 cut(s)	12, 75, 293, 317, 325, 340, 365, 469, 570
DdeI	CTNAG	3 cut(s)	336, 438, 470
DpnI	GATC	3 cut(s)	227, 386, 500
DpnII	GATC	3 cut(s)	225, 384, 498
DraI	TTTAAA	1 cut(s)	51
EaeI	YGGCCR	2 cut(s)	363, 568
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco47III	AGCGCT	1 cut(s)	488
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRI	GAATTC	1 cut(s)	17
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	2 cut(s)	256, 451
FaeI	CATG	3 cut(s)	232, 307, 466
FaiI	YATR	6 cut(s)	40, 42, 183, 230, 305, 464
FatI	CATG	3 cut(s)	228, 303, 462
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	144, 333, 571
FokI	GGATG	2 cut(s)	437, 488
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	144, 333, 571
GlaI	GCGC	3 cut(s)	91, 93, 488
GluI	GCNGC	3 cut(s)	144, 333, 571
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	4 cut(s)	75, 293, 365, 570
HapII	CCGG	1 cut(s)	87
HhaI	GCGC	3 cut(s)	92, 94, 489
Hin1II	CATG	3 cut(s)	232, 307, 466
Hin6I	GCGC	3 cut(s)	90, 92, 487
HinP1I	GCGC	3 cut(s)	90, 92, 487
HinfI	GANTC	2 cut(s)	113, 505
HpaII	CCGG	1 cut(s)	87
HphI	GGTGA	4 cut(s)	75, 232, 332, 500
Hpy166II	GTNNAC	3 cut(s)	36, 301, 548
Hpy188I	TCNGA	1 cut(s)	402
Hpy188III	TCNNGA	3 cut(s)	382, 458, 502
Hpy8I	GTNNAC	3 cut(s)	36, 301, 548
Hpy99I	CGWCG	3 cut(s)	164, 212, 299
HpyAV	CCTTC	2 cut(s)	283, 406
HpyCH4III	ACNGT	2 cut(s)	512, 586
HpyCH4IV	ACGT	3 cut(s)	207, 265, 297
HpyCH4V	TGCA	3 cut(s)	36, 98, 285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 550
HpyF3I	CTNAG	3 cut(s)	336, 438, 470
HpySE526I	ACGT	3 cut(s)	207, 265, 297
Hsp92II	CATG	3 cut(s)	232, 307, 466
HspAI	GCGC	3 cut(s)	90, 92, 487
Kzo9I	GATC	3 cut(s)	225, 384, 498
MaeII	ACGT	3 cut(s)	207, 265, 297
MalI	GATC	3 cut(s)	227, 386, 500
MboI	GATC	3 cut(s)	225, 384, 498
MboII	GAAGA	6 cut(s)	235, 505, 508, 509, 527, 592
MflI	RGATCY	1 cut(s)	384
MhlI	GDGCHC	2 cut(s)	38, 342
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	1 cut(s)	17
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	122
MnlI	CCTC	3 cut(s)	87, 163, 253
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
MseI	TTAA	1 cut(s)	50
Msp20I	TGGCCA	1 cut(s)	365
MspA1I	CMGCKG	1 cut(s)	335
MspI	CCGG	1 cut(s)	87
MspR9I	CCNGG	1 cut(s)	87
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	2 cut(s)	187, 550
NciI	CCSGG	1 cut(s)	87
NdeII	GATC	3 cut(s)	225, 384, 498
NlaIII	CATG	3 cut(s)	232, 307, 466
PauI	GCGCGC	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	276
PfeI	GAWTC	1 cut(s)	505
PkrI	GCNGC	3 cut(s)	145, 334, 572
PleI	GAGTC	1 cut(s)	121
PpsI	GAGTC	1 cut(s)	121
Psp124BI	GAGCTC	1 cut(s)	342
PspPI	GGNCC	1 cut(s)	74
PsuI	RGATCY	1 cut(s)	384
PteI	GCGCGC	1 cut(s)	90
SacI	GAGCTC	1 cut(s)	342
SaqAI	TTAA	1 cut(s)	50
SatI	GCNGC	3 cut(s)	144, 333, 571
Sau3AI	GATC	3 cut(s)	225, 384, 498
Sau96I	GGNCC	1 cut(s)	74
SchI	GAGTC	1 cut(s)	122
ScrFI	CCNGG	1 cut(s)	87
SduI	GDGCHC	2 cut(s)	38, 342
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	1 cut(s)	17
SsiI	CCGC	3 cut(s)	144, 333, 571
SspI	AATATT	1 cut(s)	434
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	1 cut(s)	85
TaaI	ACNGT	2 cut(s)	512, 586
TaiI	ACGT	3 cut(s)	210, 268, 300
TaqI	TCGA	3 cut(s)	210, 342, 520
TasI	AATT	1 cut(s)	17
TauI	GCSGC	3 cut(s)	146, 335, 573
TfiI	GAWTC	1 cut(s)	505
Tru1I	TTAA	1 cut(s)	50
Tru9I	TTAA	1 cut(s)	50
TscAI	CASTG	2 cut(s)	76, 571
TspDTI	ATGAA	3 cut(s)	10, 320, 479
TspRI	CASTG	2 cut(s)	76, 571
VneI	GTGCAC	1 cut(s)	34
XapI	RAATTY	1 cut(s)	17
XmiI	GTMKAC	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.