Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001431

Physical Location & Seq

Genomic Coordinates Forward (+)

16051310 .. 16052430

Gene Structure 1121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012183

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTCGCTCGTTGCCAACGAAGAATTCCAGCACATTCTGCGTGTGCTCAACACCAACGTCGATGGGAAGCAGAAGATCATGTTTGCCATGACCTCCATCAAAGGTATTGGCCGCCGTTTGGCCAATATAGTCTGCAAAAAGGCCGATGTCGACATGAACAAGAGAGCTGGTGAACTATCTGCTGCCGAGATTGATAACCTCATGACAATTGTTGGGAATCCTCGCGAGTTCAAAATTCCAGATTGGTTTTTGAACAGGAAGAAGGATTACAAGGATGGAAGGTATTCCCAAGTTGTTGCCAATGCTTTGGACATGAAGCTGAGAGATGATCTCGAGCGGTTGAAGAAGATCAGGAACCACCGTGGTCTTCGTCACTACTGGGGTCTTCGGGTACGTGGGCAGCACACCAAGACTACTGGTCGCAGGGGAAAGACTGTTGGTGTCTCCAAGAAGCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005886 GO:0005911 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015935 GO:0016020 GO:0019538 GO:0022613 GO:0022626 GO:0022627 GO:0030054 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0034645 GO:0042254 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0070013 GO:0071704 GO:0071840 GO:0071944 GO:0097159 GO:0098588 GO:0098805 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S13

Protein Analysis

153

Amino Acids

17.56

Weight (kDa)

10.53

Isoelectric Point (pI)

28.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S13	PF00416	14 - 142	9e-56	Ribosomal protein S13/S18

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G22780 AT1G34030 AT4G09800
fragaria_vesca	FvH4_2g23320 FvH4_4g15530
malus_domestica	MD03G1262600.v1.1 MD04G1097100.v1.1 MD06G1071000.v1.1 MD11G1283300.v1.1 MD13G1192900.v1.1 MD16G1193800.v1.1
prunus_persica	Prupe.1G013500_v2.0.a1 Prupe.8G238900_v2.0.a1 Prupe.8G238900_v2.0.a1
pyrus_communis	pycom03g21010 pycom06g11700 pycom11g25080 pycom13g16520 pycom16g16350
rosa_chinensis	RchiOBHm_Chr1g0330651 RchiOBHm_Chr4g0416231 RchiOBHm_Chr6g0290731
rosa_laevigata	RLG00000008004 RLG00000012183
rosa_multiflora	Rmu_sc0003600.1_g000001 Rmu_sc0032929.1_g000002 Rmu_sc0037025.1_g000001 Rmu_ssc0000042.1_g000046
rosa_roxburghii	Rroxscaffold_5G00360080 Rroxscaffold_7G00176770
rosa_rugosa	Rorug04G0140200 Rorug05G0191200 Rorug06G0088300 Rorug06G0088400
rosa_samantha	Rh4AG202100 Rh4BG096000 Rh4BG199500 Rh4CG213800 Rh4DG117400 Rh4DG199300 Rh5AG168200 Rh5CG236300 Rh5CG262700 Rh6AG324900 Rh6BG332500 Rh6CG338200 Rh6DG325700
rosa_wichuraiana	Rw0G012060 Rw2G037960 Rw4G017090 Rw5G015280 Rw6G028210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	337
AccI	GTMKAC	1 cut(s)	150
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	112, 337
AcoI	YGGCCR	2 cut(s)	109, 120
AcsI	RAATTY	2 cut(s)	23, 234
AfaI	GTAC	1 cut(s)	393
AfiI	CCNNNNNNNGG	1 cut(s)	118
AgsI	TTSAA	3 cut(s)	232, 253, 343
AhdI	GACNNNNNGTC	1 cut(s)	417
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	2 cut(s)	167, 319
AluI	AGCT	2 cut(s)	167, 319
Alw21I	GWGCWC	1 cut(s)	48
Alw26I	GTCTC	1 cut(s)	448
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	3 cut(s)	109, 120, 141
ApeKI	GCWGC	2 cut(s)	182, 400
ApoI	RAATTY	2 cut(s)	23, 234
Asp700I	GAANNNNTTC	1 cut(s)	283
AsuHPI	GGTGA	1 cut(s)	182
AvaI	CYCGRG	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	251, 283
BbsI	GAAGAC	2 cut(s)	359, 377
Bbv12I	GWGCWC	1 cut(s)	48
BbvI	GCAGC	2 cut(s)	169, 412
BccI	CCATC	3 cut(s)	56, 104, 269
BceAI	ACGGC	1 cut(s)	99
BcoDI	GTCTC	1 cut(s)	448
BisI	GCNGC	3 cut(s)	112, 183, 401
BlsI	GCNGC	3 cut(s)	113, 184, 402
BmeRI	GACNNNNNGTC	1 cut(s)	417
BmeT110I	CYCGRG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	356
BmrI	ACTGGG	1 cut(s)	388
BmuI	ACTGGG	1 cut(s)	388
BpiI	GAAGAC	2 cut(s)	359, 377
BplI	GAGNNNNNCTC	2 cut(s)	315, 347
BsaAI	YACGTR	1 cut(s)	395
BsaJI	CCNNGG	1 cut(s)	361
Bsc4I	CCNNNNNNNGG	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	383, 421
BseDI	CCNNGG	1 cut(s)	361
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	311
BseNI	ACTGG	2 cut(s)	383, 421
BseXI	GCAGC	2 cut(s)	169, 412
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	3 cut(s)	111, 122, 143
BsiHKAI	GWGCWC	1 cut(s)	48
BsiHKCI	CYCGRG	1 cut(s)	332
BslI	CCNNNNNNNGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	448
BsnI	GGCC	3 cut(s)	111, 122, 143
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	3 cut(s)	75, 328, 348
Bsp68I	TCGCGA	1 cut(s)	225
BspACI	CCGC	2 cut(s)	112, 337
BspANI	GGCC	3 cut(s)	111, 122, 143
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	1 cut(s)	225
BspHI	TCATGA	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	356
BsrBI	CCGCTC	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	383, 421
BssECI	CCNNGG	1 cut(s)	361
BssMI	GATC	3 cut(s)	75, 328, 348
Bst4CI	ACNGT	2 cut(s)	362, 436
BstAPI	GCANNNNNTGC	1 cut(s)	37
BstBAI	YACGTR	1 cut(s)	395
BstDEI	CTNAG	1 cut(s)	320
BstDSI	CCRYGG	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	280
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	3 cut(s)	78, 331, 351
BstMAI	GTCTC	1 cut(s)	448
BstMBI	GATC	3 cut(s)	75, 328, 348
BstMWI	GCNNNNNNNGC	1 cut(s)	37
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	169, 412
BstV2I	GAAGAC	2 cut(s)	359, 377
BstXI	CCANNNNNNTGG	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	111, 122, 143
BtgI	CCRYGG	1 cut(s)	361
BtsCI	GGATG	1 cut(s)	280
BtuMI	TCGCGA	1 cut(s)	225
CciI	TCATGA	1 cut(s)	201
Csp6I	GTAC	1 cut(s)	392
CviAII	CATG	5 cut(s)	79, 88, 154, 202, 313
CviJI	RGCY	5 cut(s)	111, 122, 143, 167, 319
CviKI_1	RGCY	5 cut(s)	111, 122, 143, 167, 319
CviQI	GTAC	1 cut(s)	392
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	3 cut(s)	77, 330, 350
DpnII	GATC	3 cut(s)	75, 328, 348
DriI	GACNNNNNGTC	1 cut(s)	417
EaeI	YGGCCR	2 cut(s)	109, 120
Eam1105I	GACNNNNNGTC	1 cut(s)	417
Eco88I	CYCGRG	1 cut(s)	332
EcoRI	GAATTC	1 cut(s)	23
FaeI	CATG	5 cut(s)	82, 91, 157, 205, 316
FaiI	YATR	6 cut(s)	80, 89, 128, 155, 203, 314
FatI	CATG	5 cut(s)	78, 87, 153, 201, 312
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	112, 183, 401
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	3 cut(s)	112, 183, 401
GluI	GCNGC	3 cut(s)	112, 183, 401
HaeIII	GGCC	3 cut(s)	111, 122, 143
Hin1II	CATG	5 cut(s)	82, 91, 157, 205, 316
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	217
HphI	GGTGA	1 cut(s)	182
Hpy166II	GTNNAC	2 cut(s)	151, 173
Hpy188III	TCNNGA	5 cut(s)	202, 224, 239, 332, 352
Hpy8I	GTNNAC	2 cut(s)	151, 173
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	2 cut(s)	256, 273
HpyCH4III	ACNGT	2 cut(s)	362, 436
HpyCH4IV	ACGT	2 cut(s)	57, 394
HpyCH4V	TGCA	1 cut(s)	135
HpyF10VI	GCNNNNNNNGC	1 cut(s)	37
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	57, 394
Hsp92II	CATG	5 cut(s)	82, 91, 157, 205, 316
Kzo9I	GATC	3 cut(s)	75, 328, 348
LpnPI	CCDG	8 cut(s)	41, 153, 241, 252, 337, 364, 402, 409
Lsp1109I	GCAGC	2 cut(s)	169, 412
MaeII	ACGT	2 cut(s)	57, 394
MaeIII	GTNAC	1 cut(s)	371
MalI	GATC	3 cut(s)	77, 330, 350
MbiI	CCGCTC	1 cut(s)	337
MboI	GATC	3 cut(s)	75, 328, 348
MboII	GAAGA	7 cut(s)	32, 85, 271, 355, 358, 359, 377
MfeI	CAATTG	1 cut(s)	207
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	122
MluCI	AATT	3 cut(s)	23, 207, 234
MluNI	TGGCCA	1 cut(s)	122
MnlI	CCTC	3 cut(s)	103, 209, 231
Mox20I	TGGCCA	1 cut(s)	122
MroXI	GAANNNNTTC	1 cut(s)	283
MscI	TGGCCA	1 cut(s)	122
Msp20I	TGGCCA	1 cut(s)	122
MunI	CAATTG	1 cut(s)	207
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	37
NdeII	GATC	3 cut(s)	75, 328, 348
NlaIII	CATG	5 cut(s)	82, 91, 157, 205, 316
NlaIV	GGNNCC	1 cut(s)	356
NmeAIII	GCCGAG	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	371
NruI	TCGCGA	1 cut(s)	225
PaeR7I	CTCGAG	1 cut(s)	332
PagI	TCATGA	1 cut(s)	201
PcsI	WCGNNNNNNNCGW	1 cut(s)	15
PdmI	GAANNNNTTC	1 cut(s)	283
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	113, 184, 402
Ppu21I	YACGTR	1 cut(s)	395
PspN4I	GGNNCC	1 cut(s)	356
RruI	TCGCGA	1 cut(s)	225
RsaI	GTAC	1 cut(s)	393
RsaNI	GTAC	1 cut(s)	392
SalI	GTCGAC	1 cut(s)	149
SatI	GCNGC	3 cut(s)	112, 183, 401
Sau3AI	GATC	3 cut(s)	75, 328, 348
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	8 cut(s)	60, 95, 106, 169, 201, 284, 321, 397
Sfr274I	CTCGAG	1 cut(s)	332
SlaI	CTCGAG	1 cut(s)	332
SmlI	CTYRAG	1 cut(s)	332
SmoI	CTYRAG	1 cut(s)	332
Sse9I	AATT	3 cut(s)	23, 207, 234
SsiI	CCGC	2 cut(s)	112, 337
TaaI	ACNGT	2 cut(s)	362, 436
TaiI	ACGT	2 cut(s)	60, 397
TaqI	TCGA	3 cut(s)	60, 150, 333
TasI	AATT	3 cut(s)	23, 207, 234
TauI	GCSGC	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	182, 400
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	170, 329
XapI	RAATTY	2 cut(s)	23, 234
XhoI	CTCGAG	1 cut(s)	332
XmiI	GTMKAC	1 cut(s)	150
XmnI	GAANNNNTTC	1 cut(s)	283

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.