FvH4_4g16170

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0009892
Physical Location & Seq
Forward (+)
20085537 .. 20088149
2613 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g16170.t1

Sequence Viewer

Length: 858 bp
ATGGCGGACAATAGCTCTCTGCCTTCTCCTAGACCTACTCCATCTTTCTTCTCTACTCCAAGATTGTTCACTAGCTTCACCTCAAAACCCTTCTCCGAAACTGAAGCTGTTATGAGCCCAACTTCCATTCTGGAAACCAAGCCATTCTTTGGTCTCAGAAACCCGTTCTGGTCGGAATCAAACACACCCAAAACCCCAGAACCTGAAACAAAGCGCCACTGGGACAAATTGGACTCCAAAGGCACTGGCCTTGCCATTGTTGATGCTCTGATTGACGATGATGGCTCTGATCCAAAACCATCAAAGCCTCAAACCCGAATGGTTATTTTCGGTTCACAGCTCAAGATTCAAATCCCTCCTCTGCCATCCTCTGTTCTCCCCTCTTCTGAATCACCAAAACTTGAAGCCGTTTTCGGAATCGAAAGGACTAATTCTCATTTGGGTCCACTCTCTTCCGGCCTGTCTCAGTCTCCGGCTAAGAAGTCCCCATTTGGGACTGTGAGTTCCGGCAATGAGACTCCAGTTTCGCCTCAGGTTTTCAAAGGGTGTCTCTCTGTTAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCATGGACCAAATCCAAAAACTACTCATATCTTTGACAACCGCGTTGTGGAGAGCTGTGATGGTGTGCCTCAACTTTCTCCTACCCGGAAGGAAAACAAGTCAAGTTACCCGTCTGAGAGTTTCCTCAGCTTCTGCTACCATTGCAAGAACAATATTGGACAGGGCAAAGATATTTACATGTACAGAGGTGAGAAGGCTTTCTGCAGCAGTGAATGCCGTTATCAGGAGATGTTGTTGGAAGAAGAAGAAGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

286

Amino Acids

31.36

Weight (kDa)

5.5

Isoelectric Point (pI)

65.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 231 - 282 6.7e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AccII CGCG 1 cut(s) 642
AciI CCGC 2 cut(s) 5, 640
AclWI GGATC 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 4 cut(s) 149, 492, 646, 823
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 3 cut(s) 350, 404, 541
AloI GAACNNNNNNTCC 2 cut(s) 487, 519
AluBI AGCT 8 cut(s) 15, 75, 107, 340, 571, 654, 729, 855
AluI AGCT 8 cut(s) 15, 75, 107, 340, 571, 654, 729, 855
Alw26I GTCTC 5 cut(s) 158, 468, 474, 509, 554
AlwI GGATC 1 cut(s) 284
AlwNI CAGNNNCTG 2 cut(s) 203, 732
AoxI GGCC 2 cut(s) 247, 457
ApeKI GCWGC 1 cut(s) 804
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
Asp700I GAANNNNTTC 1 cut(s) 797
AspLEI GCGC 1 cut(s) 216
AspS9I GGNCC 2 cut(s) 443, 605
AsuC2I CCSGG 1 cut(s) 685
AsuHPI GGTGA 3 cut(s) 70, 384, 800
AvaII GGWCC 2 cut(s) 443, 605
AxyI CCTNAGG 1 cut(s) 531
BanII GRGCYC 1 cut(s) 119
BbvCI CCTCAGC 1 cut(s) 725
BbvI GCAGC 1 cut(s) 816
BccI CCATC 5 cut(s) 49, 275, 307, 373, 653
BceAI ACGGC 2 cut(s) 392, 801
BcnI CCSGG 1 cut(s) 685
BcoDI GTCTC 5 cut(s) 158, 468, 474, 509, 554
BfaI CTAG 2 cut(s) 30, 72
BfmI CTRYAG 1 cut(s) 802
BfoI RGCGCY 1 cut(s) 217
BisI GCNGC 1 cut(s) 805
BlsI GCNGC 1 cut(s) 806
Bme1390I CCNGG 1 cut(s) 685
Bme18I GGWCC 2 cut(s) 443, 605
BmgT120I GGNCC 2 cut(s) 443, 605
BmiI GGNNCC 1 cut(s) 444
BmrFI CCNGG 1 cut(s) 685
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 229
BpmI CTGGAG 1 cut(s) 504
Bpu10I CCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 326
BpuMI CCSGG 1 cut(s) 685
BsaBI GATNNNNATC 1 cut(s) 350
BsaI GGTCTC 1 cut(s) 158
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 4 cut(s) 149, 492, 646, 823
Bse1I ACTGG 3 cut(s) 224, 250, 521
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 2 cut(s) 517, 739
Bse8I GATNNNNATC 1 cut(s) 350
BseGI GGATG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 4 cut(s) 149, 492, 646, 823
BseMI GCAATG 2 cut(s) 517, 739
BseMII CTCAG 6 cut(s) 169, 479, 545, 567, 705, 739
BseNI ACTGG 3 cut(s) 224, 250, 521
BseRI GAGGAG 1 cut(s) 348
BseXI GCAGC 1 cut(s) 816
Bsh1236I CGCG 1 cut(s) 642
BshFI GGCC 2 cut(s) 249, 459
BsiSI CCGG 4 cut(s) 456, 473, 507, 685
BslFI GGGAC 3 cut(s) 236, 469, 508
BslI CCNNNNNNNGG 4 cut(s) 149, 492, 646, 823
BsmAI GTCTC 5 cut(s) 158, 468, 474, 509, 554
BsmFI GGGAC 3 cut(s) 236, 469, 508
BsmI GAATGC 1 cut(s) 818
BsnI GGCC 2 cut(s) 249, 459
Bso31I GGTCTC 1 cut(s) 158
Bsp1286I GDGCHC 1 cut(s) 119
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 2 cut(s) 5, 640
BspANI GGCC 2 cut(s) 249, 459
BspCNI CTCAG 6 cut(s) 168, 478, 544, 568, 706, 738
BspFNI CGCG 1 cut(s) 642
BspLI GGNNCC 1 cut(s) 444
BspMAI CTGCAG 1 cut(s) 806
BspPI GGATC 1 cut(s) 284
BspTNI GGTCTC 1 cut(s) 158
BsrDI GCAATG 2 cut(s) 517, 739
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 3 cut(s) 224, 250, 521
BssMI GATC 1 cut(s) 289
Bst4CI ACNGT 1 cut(s) 499
Bst6I CTCTTC 2 cut(s) 388, 457
BstAPI GCANNNNNTGC 1 cut(s) 813
BstAUI TGTACA 1 cut(s) 780
BstDEI CTNAG 7 cut(s) 155, 465, 477, 531, 576, 714, 725
BstF5I GGATG 1 cut(s) 365
BstFNI CGCG 1 cut(s) 642
BstH2I RGCGCY 1 cut(s) 217
BstHHI GCGC 1 cut(s) 216
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 5 cut(s) 158, 468, 474, 509, 554
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 741, 813
BstNSI RCATGY 1 cut(s) 781
BstSCI CCNGG 1 cut(s) 683
BstSFI CTRYAG 1 cut(s) 802
BstUI CGCG 1 cut(s) 642
BstV1I GCAGC 1 cut(s) 816
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 2 cut(s) 249, 459
BtsCI GGATG 1 cut(s) 365
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 3 cut(s) 217, 243, 814
CaiI CAGNNNCTG 2 cut(s) 203, 732
CfoI GCGC 1 cut(s) 216
Cfr13I GGNCC 2 cut(s) 443, 605
Csp6I GTAC 1 cut(s) 781
CviAII CATG 2 cut(s) 602, 778
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 7 cut(s) 155, 465, 477, 531, 576, 714, 725
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 388, 457
EarI CTCTTC 2 cut(s) 388, 457
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 119
Eco31I GGTCTC 1 cut(s) 158
Eco47I GGWCC 2 cut(s) 443, 605
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 531
EcoT38I GRGCYC 1 cut(s) 119
FaeI CATG 2 cut(s) 605, 781
FaiI YATR 5 cut(s) 113, 585, 603, 627, 779
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 3 cut(s) 236, 469, 508
FatI CATG 2 cut(s) 601, 777
Fnu4HI GCNGC 1 cut(s) 805
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 1 cut(s) 119
Fsp4HI GCNGC 1 cut(s) 805
FspBI CTAG 2 cut(s) 30, 72
GlaI GCGC 1 cut(s) 215
GluI GCNGC 1 cut(s) 805
GsuI CTGGAG 1 cut(s) 504
HaeII RGCGCY 1 cut(s) 217
HaeIII GGCC 2 cut(s) 249, 459
HapII CCGG 4 cut(s) 456, 473, 507, 685
HhaI GCGC 1 cut(s) 216
Hin1II CATG 2 cut(s) 605, 781
Hin6I GCGC 1 cut(s) 214
HinP1I GCGC 1 cut(s) 214
HinfI GANTC 6 cut(s) 176, 233, 346, 389, 417, 517
HpaII CCGG 4 cut(s) 456, 473, 507, 685
HphI GGTGA 3 cut(s) 70, 384, 800
Hpy166II GTNNAC 3 cut(s) 69, 335, 446
Hpy188I TCNGA 9 cut(s) 97, 158, 175, 270, 289, 388, 416, 577, 715
Hpy188III TCNNGA 3 cut(s) 131, 343, 824
Hpy8I GTNNAC 3 cut(s) 69, 335, 446
HpyAV CCTTC 5 cut(s) 33, 100, 682, 787, 842
HpyCH4III ACNGT 1 cut(s) 499
HpyCH4V TGCA 2 cut(s) 744, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 741, 813
HpyF3I CTNAG 7 cut(s) 155, 465, 477, 531, 576, 714, 725
Hsp92II CATG 2 cut(s) 605, 781
HspAI GCGC 1 cut(s) 214
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 568
Lsp1109I GCAGC 1 cut(s) 816
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 30, 72
MaeIII GTNAC 1 cut(s) 704
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 6 cut(s) 40, 375, 444, 851, 854, 857
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 2 cut(s) 227, 430
MlyI GAGTC 2 cut(s) 227, 511
MmeI TCCRAC 2 cut(s) 153, 816
MroXI GAANNNNTTC 1 cut(s) 797
MspI CCGG 4 cut(s) 456, 473, 507, 685
MspR9I CCNGG 1 cut(s) 685
Mva1269I GAATGC 1 cut(s) 818
MvnI CGCG 1 cut(s) 642
MwoI GCNNNNNNNGC 2 cut(s) 741, 813
NciI CCSGG 1 cut(s) 685
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 605, 781
NlaIV GGNNCC 1 cut(s) 444
NspI RCATGY 1 cut(s) 781
PciI ACATGT 1 cut(s) 777
PctI GAATGC 1 cut(s) 818
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 4 cut(s) 176, 346, 389, 417
PflMI CCANNNNNTGG 1 cut(s) 149
PkrI GCNGC 1 cut(s) 806
PleI GAGTC 2 cut(s) 227, 511
PpsI GAGTC 2 cut(s) 227, 511
PscI ACATGT 1 cut(s) 777
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 2 cut(s) 443, 605
PstI CTGCAG 1 cut(s) 806
PstNI CAGNNNCTG 2 cut(s) 203, 732
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
SatI GCNGC 1 cut(s) 805
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 2 cut(s) 443, 605
SchI GAGTC 2 cut(s) 227, 511
ScrFI CCNGG 1 cut(s) 685
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 802
SinI GGWCC 2 cut(s) 443, 605
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 2 cut(s) 227, 430
SsiI CCGC 2 cut(s) 5, 640
SspI AATATT 1 cut(s) 754
SspMI CTAG 2 cut(s) 30, 72
StyD4I CCNGG 1 cut(s) 683
TaaI ACNGT 1 cut(s) 499
TaqI TCGA 1 cut(s) 420
TasI AATT 2 cut(s) 227, 430
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 4 cut(s) 176, 346, 389, 417
TscAI CASTG 3 cut(s) 224, 250, 814
TseI GCWGC 1 cut(s) 804
TspRI CASTG 3 cut(s) 224, 250, 814
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 443, 605
XceI RCATGY 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 2 cut(s) 30, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.