Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0009892

Physical Location & Seq

Genomic Coordinates Reverse (-)

12417567 .. 12419143

Gene Structure 1577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16520.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGGCGGAAACCAGCTCTCTTCTTTCTCCCAGAGAAAAACATACGAAACCCACTTCCTCTCTCTTCGCGAATCCGAGATTGTTCACCAGCTTCACCTCGAAATCGGTCTCCGAAACTGACGCCGTGATGAGCCCAACCTCCATCCTCGAAACGAAGCCATTTTTGGGCCTCCGAAACCCCTTCTGGTCCGAATCGAACACCCCCAGAACCCCGGAGCCCGAATCCAGACGCATCCACTGGGACAAATTGGACTCCAAAGGCATCGGCCTCGCCATCGTCGACGCTCTCAACGACTCCGACCCGAAACCGTCAAAGCCCCAAACCCGAATGGTGATTTTCGGGTCGCAGCTCAAGATCCAAATCCCTCCTCTGCAACCCTACCCTTCCGAATCACCGAAGTATCCGGCCGATTTTGGCAACAAGACGGAGAATTCCCATCTGGGTTCTTCCTCCTCCGTCTCGTCTCAGTCGCCGGAGAAGACATCGCCGTTCGAATCAGCGAGTTCCGGGCTCGAGACGATGAATTCGACCCGGGTTTTCACTAGCTGTCTCACTGTCAGTGAAATGGAGCTCTCAGAGGATTACACGTGTGTGATTTCCCACGGTCCGAACCCGAAAACCACGCACATCTTTGACAATTGCATTGTGGAGAGCTCCGATGGCGTCCCGGAGTTTTCTCCCGGCAGGAAGTCAAACGGGTCAAGCTATCTGTCTGAGAGTTTTCTCAGCTTCTGTGACAATTGCAAGAAGAATCTTGGCCACGGCAAAGATATTTTCATGTACAGGGGTGAGAAGGCGTTCTGCAGCCGTGAGTGCCGTTACCAGGAGATGTTGTTGGAGGAGGGAGCGGATAAACTGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

289

Amino Acids

31.82

Weight (kDa)

5.62

Isoelectric Point (pI)

55.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22550
fragaria_vesca	FvH4_4g16170
malus_domestica	MD13G1195400.v1.1 MD16G1196000.v1.1
prunus_persica	Prupe.1G016000_v2.0.a1 Prupe.1G016000_v2.0.a1
pyrus_communis	pycom04g03200 pycom05g22340 pycom07g01420 pycom13g16750 pycom16g16520
rosa_chinensis	RchiOBHm_Chr4g0415801
rosa_laevigata	RLG00000008041
rosa_multiflora	Rmu_sc0003438.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359640
rosa_rugosa	Rorug04G0136600
rosa_samantha	Rh4AG197800 Rh4BG196000 Rh4CG208800 Rh4DG195700
rosa_wichuraiana	Rw4G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	848
AccI	GTMKAC	1 cut(s)	279
AccII	CGCG	1 cut(s)	68
AciI	CCGC	2 cut(s)	5, 848
AclWI	GGATC	1 cut(s)	349
AcoI	YGGCCR	2 cut(s)	405, 757
AcsI	RAATTY	2 cut(s)	430, 523
AcvI	CACGTG	1 cut(s)	588
AcyI	GRCGYC	2 cut(s)	120, 663
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	2 cut(s)	164, 823
AflIII	ACRYGT	2 cut(s)	585, 587
AjnI	CCWGG	1 cut(s)	822
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	9 cut(s)	15, 90, 349, 546, 571, 654, 705, 729, 863
AluI	AGCT	9 cut(s)	15, 90, 349, 546, 571, 654, 705, 729, 863
Alw21I	GWGCWC	2 cut(s)	573, 656
Alw26I	GTCTC	5 cut(s)	112, 463, 468, 509, 554
AlwI	GGATC	1 cut(s)	349
AlwNI	CAGNNNCTG	1 cut(s)	732
Ama87I	CYCGRG	2 cut(s)	512, 531
AoxI	GGCC	4 cut(s)	166, 265, 405, 757
ApeKI	GCWGC	2 cut(s)	346, 804
ApoI	RAATTY	2 cut(s)	430, 523
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
Asp700I	GAANNNNTTC	1 cut(s)	797
AspS9I	GGNCC	3 cut(s)	166, 186, 605
AsuC2I	CCSGG	6 cut(s)	212, 508, 532, 533, 668, 681
AsuHPI	GGTGA	5 cut(s)	76, 85, 343, 384, 800
AsuII	TTCGAA	1 cut(s)	492
AvaI	CYCGRG	2 cut(s)	512, 531
AvaII	GGWCC	2 cut(s)	186, 605
BaeI	ACNNNNGTAYC	2 cut(s)	383, 416
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	5 cut(s)	134, 219, 513, 573, 656
BbrPI	CACGTG	1 cut(s)	588
BbsI	GAAGAC	1 cut(s)	485
Bbv12I	GWGCWC	2 cut(s)	573, 656
BbvI	GCAGC	2 cut(s)	358, 816
BccI	CCATC	4 cut(s)	149, 281, 444, 653
BceAI	ACGGC	5 cut(s)	107, 472, 778, 792, 801
BcgI	CGANNNNNNTGC	2 cut(s)	250, 284
BciT130I	CCWGG	1 cut(s)	824
BciVI	GTATCC	1 cut(s)	411
BcnI	CCSGG	6 cut(s)	212, 508, 532, 533, 668, 681
BcoDI	GTCTC	5 cut(s)	112, 463, 468, 509, 554
BfaI	CTAG	1 cut(s)	543
BfmI	CTRYAG	1 cut(s)	802
BfuI	GTATCC	1 cut(s)	411
BisI	GCNGC	2 cut(s)	347, 805
BlsI	GCNGC	2 cut(s)	348, 806
Bme1390I	CCNGG	7 cut(s)	212, 508, 532, 533, 668, 681, 824
Bme18I	GGWCC	2 cut(s)	186, 605
BmeT110I	CYCGRG	2 cut(s)	512, 531
BmgT120I	GGNCC	3 cut(s)	166, 186, 605
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	7 cut(s)	212, 508, 532, 533, 668, 681, 824
BmrI	ACTGGG	1 cut(s)	247
BmsI	GCATC	2 cut(s)	240, 270
BmuI	ACTGGG	1 cut(s)	247
BpiI	GAAGAC	1 cut(s)	485
Bpu14I	TTCGAA	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	335
BpuMI	CCSGG	6 cut(s)	212, 508, 532, 533, 668, 681
BsaAI	YACGTR	1 cut(s)	588
BsaBI	GATNNNNATC	1 cut(s)	359
BsaHI	GRCGYC	2 cut(s)	120, 663
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	4 cut(s)	210, 531, 601, 760
BsaXI	ACNNNNNCTCC	2 cut(s)	818, 848
Bsc4I	CCNNNNNNNGG	2 cut(s)	164, 823
Bse1I	ACTGG	2 cut(s)	242, 861
Bse8I	GATNNNNATC	1 cut(s)	359
BseBI	CCWGG	1 cut(s)	824
BseDI	CCNNGG	4 cut(s)	210, 531, 601, 760
BseGI	GGATG	2 cut(s)	141, 231
BseJI	GATNNNNATC	1 cut(s)	359
BseLI	CCNNNNNNNGG	2 cut(s)	164, 823
BseMII	CTCAG	4 cut(s)	479, 588, 705, 739
BseNI	ACTGG	2 cut(s)	242, 861
BseRI	GAGGAG	3 cut(s)	357, 442, 854
BseX3I	CGGCCG	1 cut(s)	405
BseXI	GCAGC	2 cut(s)	358, 816
Bsh1236I	CGCG	1 cut(s)	68
Bsh1285I	CGRYCG	1 cut(s)	408
BshFI	GGCC	4 cut(s)	168, 267, 407, 759
BsiEI	CGRYCG	1 cut(s)	408
BsiHKAI	GWGCWC	2 cut(s)	573, 656
BsiHKCI	CYCGRG	2 cut(s)	512, 531
BsiSI	CCGG	7 cut(s)	212, 404, 473, 507, 532, 668, 681
BslFI	GGGAC	2 cut(s)	254, 650
BslI	CCNNNNNNNGG	2 cut(s)	164, 823
BsmAI	GTCTC	5 cut(s)	112, 463, 468, 509, 554
BsmBI	CGTCTC	3 cut(s)	463, 468, 509
BsmFI	GGGAC	2 cut(s)	254, 650
BsnI	GGCC	4 cut(s)	168, 267, 407, 759
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	2 cut(s)	512, 531
Bsp119I	TTCGAA	1 cut(s)	492
Bsp1286I	GDGCHC	5 cut(s)	134, 219, 513, 573, 656
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	1 cut(s)	354
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	2 cut(s)	5, 848
BspANI	GGCC	4 cut(s)	168, 267, 407, 759
BspCNI	CTCAG	4 cut(s)	478, 587, 706, 738
BspFNI	CGCG	1 cut(s)	68
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	806
BspPI	GGATC	1 cut(s)	349
BspT104I	TTCGAA	1 cut(s)	492
BspTNI	GGTCTC	1 cut(s)	112
BsrBI	CCGCTC	1 cut(s)	848
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	2 cut(s)	242, 861
BssECI	CCNNGG	4 cut(s)	210, 531, 601, 760
BssMI	GATC	1 cut(s)	354
BssNI	GRCGYC	2 cut(s)	120, 663
Bst2UI	CCWGG	1 cut(s)	824
Bst4CI	ACNGT	3 cut(s)	309, 556, 605
Bst6I	CTCTTC	2 cut(s)	24, 68
BstACI	GRCGYC	2 cut(s)	120, 663
BstAUI	TGTACA	1 cut(s)	780
BstBAI	YACGTR	1 cut(s)	588
BstBI	TTCGAA	1 cut(s)	492
BstDEI	CTNAG	4 cut(s)	465, 574, 714, 725
BstDSI	CCRYGG	2 cut(s)	601, 760
BstF5I	GGATG	2 cut(s)	141, 231
BstFNI	CGCG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	357
BstMAI	GTCTC	5 cut(s)	112, 463, 468, 509, 554
BstMBI	GATC	1 cut(s)	354
BstMCI	CGRYCG	1 cut(s)	408
BstMWI	GCNNNNNNNGC	2 cut(s)	660, 813
BstNI	CCWGG	1 cut(s)	824
BstSCI	CCNGG	7 cut(s)	210, 506, 530, 531, 666, 679, 822
BstSFI	CTRYAG	1 cut(s)	802
BstUI	CGCG	1 cut(s)	68
BstV1I	GCAGC	2 cut(s)	358, 816
BstV2I	GAAGAC	1 cut(s)	485
BstX2I	RGATCY	1 cut(s)	354
BstYI	RGATCY	1 cut(s)	354
BstZI	CGGCCG	1 cut(s)	405
BsuI	GTATCC	1 cut(s)	411
BsuRI	GGCC	4 cut(s)	168, 267, 407, 759
BtgI	CCRYGG	2 cut(s)	601, 760
BtgZI	GCGATG	1 cut(s)	468
BtsCI	GGATG	2 cut(s)	141, 231
BtsIMutI	CAGTG	3 cut(s)	235, 552, 565
BtuMI	TCGCGA	1 cut(s)	68
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	166, 186, 605
Cfr9I	CCCGGG	1 cut(s)	531
CpoI	CGGWCCG	1 cut(s)	605
CseI	GACGC	4 cut(s)	128, 237, 290, 652
Csp6I	GTAC	1 cut(s)	781
CspI	CGGWCCG	1 cut(s)	605
CviAII	CATG	1 cut(s)	778
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	4 cut(s)	465, 574, 714, 725
DpnI	GATC	1 cut(s)	356
DpnII	GATC	1 cut(s)	354
EaeI	YGGCCR	2 cut(s)	405, 757
EagI	CGGCCG	1 cut(s)	405
Eam1104I	CTCTTC	2 cut(s)	24, 68
EarI	CTCTTC	2 cut(s)	24, 68
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	2 cut(s)	571, 654
EclXI	CGGCCG	1 cut(s)	405
Eco24I	GRGCYC	5 cut(s)	134, 219, 513, 573, 656
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	2 cut(s)	186, 605
Eco52I	CGGCCG	1 cut(s)	405
Eco53kI	GAGCTC	2 cut(s)	571, 654
Eco72I	CACGTG	1 cut(s)	588
Eco88I	CYCGRG	2 cut(s)	512, 531
EcoICRI	GAGCTC	2 cut(s)	571, 654
EcoRI	GAATTC	2 cut(s)	430, 523
EcoRII	CCWGG	1 cut(s)	822
EcoT38I	GRGCYC	5 cut(s)	134, 219, 513, 573, 656
Esp3I	CGTCTC	3 cut(s)	463, 468, 509
FaeI	CATG	1 cut(s)	781
FaiI	YATR	2 cut(s)	42, 779
FaqI	GGGAC	2 cut(s)	254, 650
FatI	CATG	1 cut(s)	777
FblI	GTMKAC	1 cut(s)	279
Fnu4HI	GCNGC	2 cut(s)	347, 805
FokI	GGATG	2 cut(s)	128, 218
FriOI	GRGCYC	5 cut(s)	134, 219, 513, 573, 656
Fsp4HI	GCNGC	2 cut(s)	347, 805
FspBI	CTAG	1 cut(s)	543
GluI	GCNGC	2 cut(s)	347, 805
HaeIII	GGCC	4 cut(s)	168, 267, 407, 759
HapII	CCGG	7 cut(s)	212, 404, 473, 507, 532, 668, 681
HgaI	GACGC	4 cut(s)	128, 237, 290, 652
Hin1I	GRCGYC	2 cut(s)	120, 663
Hin1II	CATG	1 cut(s)	781
HincII	GTYRAC	1 cut(s)	280
HindII	GTYRAC	1 cut(s)	280
HindIII	AAGCTT	1 cut(s)	861
HinfI	GANTC	8 cut(s)	70, 191, 221, 251, 293, 389, 494, 751
HpaII	CCGG	7 cut(s)	212, 404, 473, 507, 532, 668, 681
HphI	GGTGA	5 cut(s)	76, 85, 343, 384, 800
Hpy166II	GTNNAC	2 cut(s)	84, 280
Hpy188III	TCNNGA	4 cut(s)	67, 225, 352, 514
Hpy8I	GTNNAC	2 cut(s)	84, 280
Hpy99I	CGWCG	2 cut(s)	281, 284
HpyAV	CCTTC	3 cut(s)	190, 393, 787
HpyCH4III	ACNGT	3 cut(s)	309, 556, 605
HpyCH4IV	ACGT	1 cut(s)	587
HpyCH4V	TGCA	4 cut(s)	373, 642, 744, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	660, 813
HpyF3I	CTNAG	4 cut(s)	465, 574, 714, 725
HpySE526I	ACGT	1 cut(s)	587
Hsp92I	GRCGYC	2 cut(s)	120, 663
Hsp92II	CATG	1 cut(s)	781
Kzo9I	GATC	1 cut(s)	354
LmnI	GCTCC	4 cut(s)	214, 568, 659, 845
Lsp1109I	GCAGC	2 cut(s)	358, 816
LweI	GCATC	2 cut(s)	240, 270
MaeI	CTAG	1 cut(s)	543
MaeII	ACGT	1 cut(s)	587
MaeIII	GTNAC	2 cut(s)	734, 818
MalI	GATC	1 cut(s)	356
MbiI	CCGCTC	1 cut(s)	848
MboI	GATC	1 cut(s)	354
MboII	GAAGA	5 cut(s)	11, 55, 438, 490, 760
MfeI	CAATTG	2 cut(s)	637, 739
MflI	RGATCY	1 cut(s)	354
MhlI	GDGCHC	5 cut(s)	134, 219, 513, 573, 656
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	5 cut(s)	245, 430, 523, 637, 739
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	245, 287
MmeI	TCCRAC	2 cut(s)	321, 816
Mox20I	TGGCCA	1 cut(s)	759
MroXI	GAANNNNTTC	1 cut(s)	797
MscI	TGGCCA	1 cut(s)	759
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	759
MspI	CCGG	7 cut(s)	212, 404, 473, 507, 532, 668, 681
MspR9I	CCNGG	7 cut(s)	212, 508, 532, 533, 668, 681, 824
MunI	CAATTG	2 cut(s)	637, 739
MvaI	CCWGG	1 cut(s)	824
MvnI	CGCG	1 cut(s)	68
MwoI	GCNNNNNNNGC	2 cut(s)	660, 813
NciI	CCSGG	6 cut(s)	212, 508, 532, 533, 668, 681
NdeII	GATC	1 cut(s)	354
NlaIII	CATG	1 cut(s)	781
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	1 cut(s)	734
NruI	TCGCGA	1 cut(s)	68
NspV	TTCGAA	1 cut(s)	492
OliI	CACNNNNGTG	1 cut(s)	590
PaeR7I	CTCGAG	1 cut(s)	512
PcsI	WCGNNNNNNNCGW	3 cut(s)	276, 288, 524
PdmI	GAANNNNTTC	1 cut(s)	797
PfeI	GAWTC	6 cut(s)	70, 191, 221, 389, 494, 751
PfoI	TCCNGGA	1 cut(s)	666
PkrI	GCNGC	2 cut(s)	348, 806
PleI	GAGTC	2 cut(s)	245, 287
PmaCI	CACGTG	1 cut(s)	588
PmlI	CACGTG	1 cut(s)	588
PpsI	GAGTC	2 cut(s)	245, 287
Ppu21I	YACGTR	1 cut(s)	588
Psp124BI	GAGCTC	2 cut(s)	573, 656
Psp6I	CCWGG	1 cut(s)	822
PspCI	CACGTG	1 cut(s)	588
PspGI	CCWGG	1 cut(s)	822
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	3 cut(s)	166, 186, 605
PstI	CTGCAG	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	732
PsuI	RGATCY	1 cut(s)	354
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	1 cut(s)	590
Rsr2I	CGGWCCG	1 cut(s)	605
RsrII	CGGWCCG	1 cut(s)	605
SacI	GAGCTC	2 cut(s)	573, 656
SalI	GTCGAC	1 cut(s)	278
SatI	GCNGC	2 cut(s)	347, 805
Sau3AI	GATC	1 cut(s)	354
Sau96I	GGNCC	3 cut(s)	166, 186, 605
SchI	GAGTC	2 cut(s)	245, 287
ScrFI	CCNGG	7 cut(s)	212, 508, 532, 533, 668, 681, 824
SduI	GDGCHC	5 cut(s)	134, 219, 513, 573, 656
SfaNI	GCATC	2 cut(s)	240, 270
SfcI	CTRYAG	1 cut(s)	802
Sfr274I	CTCGAG	1 cut(s)	512
SfuI	TTCGAA	1 cut(s)	492
SgrDI	CGTCGACG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	186, 605
SlaI	CTCGAG	1 cut(s)	512
SmaI	CCCGGG	1 cut(s)	533
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	2 cut(s)	350, 512
SmoI	CTYRAG	2 cut(s)	350, 512
Sse9I	AATT	5 cut(s)	245, 430, 523, 637, 739
SsiI	CCGC	2 cut(s)	5, 848
SspMI	CTAG	1 cut(s)	543
SstI	GAGCTC	2 cut(s)	573, 656
StyD4I	CCNGG	7 cut(s)	210, 506, 530, 531, 666, 679, 822
TaaI	ACNGT	3 cut(s)	309, 556, 605
TaiI	ACGT	1 cut(s)	590
TaqI	TCGA	7 cut(s)	98, 147, 194, 279, 492, 513, 527
TaqII	GACCGA	1 cut(s)	94
TasI	AATT	5 cut(s)	245, 430, 523, 637, 739
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	6 cut(s)	70, 191, 221, 389, 494, 751
TscAI	CASTG	3 cut(s)	242, 559, 565
TseFI	GTSAC	1 cut(s)	734
TseI	GCWGC	2 cut(s)	346, 804
Tsp45I	GTSAC	1 cut(s)	734
TspDTI	ATGAA	2 cut(s)	536, 766
TspGWI	ACGGA	2 cut(s)	440, 445
TspMI	CCCGGG	1 cut(s)	531
TspRI	CASTG	3 cut(s)	242, 559, 565
VpaK11BI	GGWCC	2 cut(s)	186, 605
XapI	RAATTY	2 cut(s)	430, 523
XhoI	CTCGAG	1 cut(s)	512
XmaI	CCCGGG	1 cut(s)	531
XmiI	GTMKAC	1 cut(s)	279
XmnI	GAANNNNTTC	1 cut(s)	797
XspI	CTAG	1 cut(s)	543

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.