RchiOBHm_Chr4g0415801

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0009892
Physical Location & Seq
Forward (+)
40535707 .. 40538440
2734 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38599

Sequence Viewer

Length: 795 bp
ATGGCGGACAGTAACTCTCTGCCTTCTCCTAGACCCGTTTCATCTTTCTTCTCCACTCCGAGATTGTTCACTAGCTTCACCTCAAAACCCTTCTCTGAAACTGAAGCTGTTATGAGCCCAACTTCCATTCTGGAAACCAAGCCATTCTTTGGTCTAAGAAACCCATTCTGGTCCGAATCAAATACACCCAAAACCCCAGAACCCGAAACCAAACGCCACTGGGACAAATTGGACTCCAAAGGCATTGGCCTTGCCATTGTTGATGCTCTAATTGACGATGATGGCTCTGATCCAAAACCATCAAAGCCCCAAAGCCGAATGGTTATTTTCGGTTCACAGCTCAAGATTCAAATCCCTCCTCTGCCATCCTCTGTTCTTCCCTCTTCTGAATCACCAAAACTTGAAGCCGTTTTCGGAATCGAAAGAACGAATTCTCCTTTGGGTCCTTTCTCTTCCGGCCTGTCTCAATCTCCGGCTAAGAAATCCCCATTTGGGACTGTCAGTTCCGGCATTGAGACTCCTGTTTCGCCTCAGGTTTTCAAGGGGTGTCTCTCTGTTAGTGAAATGGAGCTCTCTGAGGATTATACTTGTGTGATTTCTCATGGGCCAAATCCAAGAACTACTCATATCTTTGACAACTGCGTTGTGGAGAGCTGTGATGGTGTGCCTGAACTTTCCCCAATCCGGAAGGAAAACGTGTCAAGTTACCCATCTGAGAGTTTCCTCAGCTTCTGCTACCATTGCAAGAAGAATCTTGGGCAGGGCAAAGATATTTACATGTACAGTGTTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

264

Amino Acids

28.86

Weight (kDa)

5.65

Isoelectric Point (pI)

68.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 233 - 261 1.7e-09 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 149
AccIII TCCGGA 1 cut(s) 684
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 284
AcsI RAATTY 1 cut(s) 430
AcuI CTGAAG 1 cut(s) 123
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 3 cut(s) 149, 492, 684
AflIII ACRYGT 2 cut(s) 696, 777
AgsI TTSAA 3 cut(s) 350, 404, 541
AjuI GAANNNNNNNTTGG 2 cut(s) 422, 454
AloI GAACNNNNNNTCC 4 cut(s) 418, 450, 487, 519
AluBI AGCT 6 cut(s) 75, 107, 340, 571, 654, 729
AluI AGCT 6 cut(s) 75, 107, 340, 571, 654, 729
Alw21I GWGCWC 1 cut(s) 573
Alw26I GTCTC 3 cut(s) 468, 509, 554
AlwI GGATC 1 cut(s) 284
AlwNI CAGNNNCTG 1 cut(s) 732
Aor13HI TCCGGA 1 cut(s) 684
AoxI GGCC 3 cut(s) 247, 457, 605
ApoI RAATTY 1 cut(s) 430
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
Asp700I GAANNNNTTC 1 cut(s) 430
AspS9I GGNCC 3 cut(s) 171, 443, 605
AsuHPI GGTGA 2 cut(s) 70, 384
AvaII GGWCC 2 cut(s) 171, 443
AxyI CCTNAGG 1 cut(s) 531
BanII GRGCYC 2 cut(s) 119, 573
Bbv12I GWGCWC 1 cut(s) 573
BbvCI CCTCAGC 1 cut(s) 725
BccI CCATC 5 cut(s) 275, 307, 373, 653, 718
BceAI ACGGC 1 cut(s) 392
BcoDI GTCTC 3 cut(s) 468, 509, 554
BfaI CTAG 2 cut(s) 30, 72
Bme18I GGWCC 2 cut(s) 171, 443
BmgT120I GGNCC 3 cut(s) 171, 443, 605
BmiI GGNNCC 1 cut(s) 444
BmrI ACTGGG 1 cut(s) 229
BmsI GCATC 1 cut(s) 253
BmuI ACTGGG 1 cut(s) 229
Bpu10I CCTNAGC 1 cut(s) 725
BpuEI CTTGAG 1 cut(s) 326
BsaBI GATNNNNATC 1 cut(s) 350
BsaWI WCCGGW 1 cut(s) 684
BsaXI ACNNNNNCTCC 2 cut(s) 418, 448
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 492, 684
Bse1I ACTGG 1 cut(s) 224
Bse21I CCTNAGG 1 cut(s) 531
Bse3DI GCAATG 1 cut(s) 739
Bse8I GATNNNNATC 1 cut(s) 350
BseAI TCCGGA 1 cut(s) 684
BseGI GGATG 1 cut(s) 365
BseJI GATNNNNATC 1 cut(s) 350
BseLI CCNNNNNNNGG 3 cut(s) 149, 492, 684
BseMI GCAATG 1 cut(s) 739
BseMII CTCAG 4 cut(s) 545, 567, 705, 739
BseNI ACTGG 1 cut(s) 224
BseRI GAGGAG 1 cut(s) 348
BshFI GGCC 3 cut(s) 249, 459, 607
BsiHKAI GWGCWC 1 cut(s) 573
BsiSI CCGG 4 cut(s) 456, 473, 507, 685
BslFI GGGAC 2 cut(s) 236, 508
BslI CCNNNNNNNGG 3 cut(s) 149, 492, 684
BsmAI GTCTC 3 cut(s) 468, 509, 554
BsmFI GGGAC 2 cut(s) 236, 508
BsnI GGCC 3 cut(s) 249, 459, 607
Bsp1286I GDGCHC 2 cut(s) 119, 573
Bsp13I TCCGGA 1 cut(s) 684
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 1 cut(s) 289
BspACI CCGC 1 cut(s) 5
BspANI GGCC 3 cut(s) 249, 459, 607
BspCNI CTCAG 4 cut(s) 544, 568, 706, 738
BspEI TCCGGA 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 444
BspPI GGATC 1 cut(s) 284
BsrDI GCAATG 1 cut(s) 739
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 1 cut(s) 224
BssMI GATC 1 cut(s) 289
Bst4CI ACNGT 3 cut(s) 11, 499, 785
Bst6I CTCTTC 2 cut(s) 388, 457
BstAUI TGTACA 1 cut(s) 780
BstDEI CTNAG 6 cut(s) 155, 477, 531, 576, 714, 725
BstF5I GGATG 1 cut(s) 365
BstKTI GATC 1 cut(s) 292
BstMAI GTCTC 3 cut(s) 468, 509, 554
BstMBI GATC 1 cut(s) 289
BstMWI GCNNNNNNNGC 1 cut(s) 741
BstNSI RCATGY 1 cut(s) 781
Bsu36I CCTNAGG 1 cut(s) 531
BsuRI GGCC 3 cut(s) 249, 459, 607
BtsCI GGATG 1 cut(s) 365
BtsIMutI CAGTG 2 cut(s) 217, 790
CaiI CAGNNNCTG 1 cut(s) 732
Cfr13I GGNCC 3 cut(s) 171, 443, 605
Csp6I GTAC 1 cut(s) 781
CviAII CATG 2 cut(s) 602, 778
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 6 cut(s) 155, 477, 531, 576, 714, 725
DpnI GATC 1 cut(s) 291
DpnII GATC 1 cut(s) 289
Eam1104I CTCTTC 2 cut(s) 388, 457
EarI CTCTTC 2 cut(s) 388, 457
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 571
Eco24I GRGCYC 2 cut(s) 119, 573
Eco47I GGWCC 2 cut(s) 171, 443
Eco53kI GAGCTC 1 cut(s) 571
Eco57I CTGAAG 1 cut(s) 123
Eco81I CCTNAGG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 571
EcoO109I RGGNCCY 1 cut(s) 443
EcoRI GAATTC 1 cut(s) 430
EcoT38I GRGCYC 2 cut(s) 119, 573
FaeI CATG 2 cut(s) 605, 781
FaiI YATR 5 cut(s) 113, 585, 603, 627, 779
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FaqI GGGAC 2 cut(s) 236, 508
FatI CATG 2 cut(s) 601, 777
FokI GGATG 1 cut(s) 352
FriOI GRGCYC 2 cut(s) 119, 573
FspBI CTAG 2 cut(s) 30, 72
HaeIII GGCC 3 cut(s) 249, 459, 607
HapII CCGG 4 cut(s) 456, 473, 507, 685
Hin1II CATG 2 cut(s) 605, 781
HinfI GANTC 7 cut(s) 176, 233, 346, 389, 417, 517, 751
HpaII CCGG 4 cut(s) 456, 473, 507, 685
HphI GGTGA 2 cut(s) 70, 384
Hpy166II GTNNAC 2 cut(s) 69, 335
Hpy188I TCNGA 8 cut(s) 60, 97, 175, 289, 388, 416, 577, 715
Hpy188III TCNNGA 3 cut(s) 131, 343, 685
Hpy8I GTNNAC 2 cut(s) 69, 335
HpyAV CCTTC 3 cut(s) 33, 100, 682
HpyCH4III ACNGT 3 cut(s) 11, 499, 785
HpyCH4IV ACGT 1 cut(s) 696
HpyCH4V TGCA 1 cut(s) 744
HpyF10VI GCNNNNNNNGC 1 cut(s) 741
HpyF3I CTNAG 6 cut(s) 155, 477, 531, 576, 714, 725
HpySE526I ACGT 1 cut(s) 696
Hsp92II CATG 2 cut(s) 605, 781
Kpn2I TCCGGA 1 cut(s) 684
Kzo9I GATC 1 cut(s) 289
LmnI GCTCC 1 cut(s) 568
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 30, 72
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 2 cut(s) 11, 704
MalI GATC 1 cut(s) 291
MboI GATC 1 cut(s) 289
MboII GAAGA 5 cut(s) 40, 368, 375, 444, 760
MhlI GDGCHC 2 cut(s) 119, 573
MluCI AATT 3 cut(s) 227, 270, 430
MlyI GAGTC 2 cut(s) 227, 511
MnlI CCTC 8 cut(s) 91, 366, 369, 379, 391, 540, 571, 734
MroI TCCGGA 1 cut(s) 684
MroXI GAANNNNTTC 1 cut(s) 430
MspI CCGG 4 cut(s) 456, 473, 507, 685
MwoI GCNNNNNNNGC 1 cut(s) 741
NdeII GATC 1 cut(s) 289
NlaIII CATG 2 cut(s) 605, 781
NlaIV GGNNCC 1 cut(s) 444
NspI RCATGY 1 cut(s) 781
PciI ACATGT 1 cut(s) 777
PdmI GAANNNNTTC 1 cut(s) 430
PfeI GAWTC 5 cut(s) 176, 346, 389, 417, 751
PflMI CCANNNNNTGG 1 cut(s) 149
PleI GAGTC 2 cut(s) 227, 511
PpsI GAGTC 2 cut(s) 227, 511
PpuMI RGGWCCY 1 cut(s) 443
PscI ACATGT 1 cut(s) 777
Psp124BI GAGCTC 1 cut(s) 573
Psp5II RGGWCCY 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 444
PspPI GGNCC 3 cut(s) 171, 443, 605
PspPPI RGGWCCY 1 cut(s) 443
PstNI CAGNNNCTG 1 cut(s) 732
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
SacI GAGCTC 1 cut(s) 573
Sau3AI GATC 1 cut(s) 289
Sau96I GGNCC 3 cut(s) 171, 443, 605
SchI GAGTC 2 cut(s) 227, 511
SduI GDGCHC 2 cut(s) 119, 573
SetI ASST 9 cut(s) 77, 83, 109, 342, 537, 573, 656, 699, 731
SfaNI GCATC 1 cut(s) 253
SinI GGWCC 2 cut(s) 171, 443
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 3 cut(s) 227, 270, 430
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 30, 72
SstI GAGCTC 1 cut(s) 573
TaaI ACNGT 3 cut(s) 11, 499, 785
TaiI ACGT 1 cut(s) 699
TaqI TCGA 1 cut(s) 420
TasI AATT 3 cut(s) 227, 270, 430
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 5 cut(s) 176, 346, 389, 417, 751
TscAI CASTG 2 cut(s) 224, 790
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 2 cut(s) 224, 790
Van91I CCANNNNNTGG 1 cut(s) 149
VpaK11BI GGWCC 2 cut(s) 171, 443
XapI RAATTY 1 cut(s) 430
XceI RCATGY 1 cut(s) 781
XmnI GAANNNNTTC 1 cut(s) 430
XspI CTAG 2 cut(s) 30, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.