Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003438.1

Orthogroup ID

OG0009892

Physical Location & Seq

Genomic Coordinates Reverse (-)

19745 .. 21182

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003438.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

atggcggacagtaactctctgccttctcctagacccgtttcatctttcttctccactccgagattgttcactagcttcacctcaaaacccttctctgaaactgaagctgttatgagcccaacttccattctggaaactaagccattctttggtctaagaaacccattctggtccgaatcaaatacacccaaaaccccagaacccgaaaccaaacgccactgggacaaattggactccaaaggcattggccttgccattgttgatgctctaattgacgatgatggctctgatccaaaaccatcaaagccccaaagccgaatggttattttcggttcacagctcaagattcaaatccctcctctgccatcctctgttcttccctcttctgaaccacctaaacttgaagccgttttcggaatcgaaagaacgacttctcctttgggtcctttctcttccggcctgtctcaatctccggctaagaaatccccatttgggactgtcagttccggcattgagactcctgtttcgcctcaggttttcaagggctgtctctctgttagtgaaatggagctctctgaggattatacttgtgtgatttctcatgggccaaatccaagaactactcatatctttgacaactgcgttgtggagagctgtgatggtgtgcctgaactttccccaatccggaaggaaaacgtgtcaagttacctgtctgagagtttcctcagctcctgctaccattgcaagaagaatcttgggcagggcaaagacatttacatgtacagaggtgagaaggcgttctgcagcagtgaatgccgttatcaggagatgatgttggaggaagaaggaagctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

284

Amino Acids

31.16

Weight (kDa)

5.28

Isoelectric Point (pI)

69.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22550
fragaria_vesca	FvH4_4g16170
malus_domestica	MD13G1195400.v1.1 MD16G1196000.v1.1
prunus_persica	Prupe.1G016000_v2.0.a1 Prupe.1G016000_v2.0.a1
pyrus_communis	pycom04g03200 pycom05g22340 pycom07g01420 pycom13g16750 pycom16g16520
rosa_chinensis	RchiOBHm_Chr4g0415801
rosa_laevigata	RLG00000008041
rosa_multiflora	Rmu_sc0003438.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359640
rosa_rugosa	Rorug04G0136600
rosa_samantha	Rh4AG197800 Rh4BG196000 Rh4CG208800 Rh4DG195700
rosa_wichuraiana	Rw4G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	149
AccIII	TCCGGA	1 cut(s)	684
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	123
AfaI	GTAC	1 cut(s)	782
AfiI	CCNNNNNNNGG	4 cut(s)	149, 492, 684, 823
AflIII	ACRYGT	2 cut(s)	696, 777
AgsI	TTSAA	3 cut(s)	350, 404, 541
AloI	GAACNNNNNNTCC	4 cut(s)	418, 450, 487, 519
AluBI	AGCT	7 cut(s)	75, 107, 340, 571, 654, 729, 852
AluI	AGCT	7 cut(s)	75, 107, 340, 571, 654, 729, 852
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	3 cut(s)	468, 509, 554
AlwI	GGATC	1 cut(s)	284
AlwNI	CAGNNNCTG	1 cut(s)	732
Aor13HI	TCCGGA	1 cut(s)	684
AoxI	GGCC	3 cut(s)	247, 457, 605
ApeKI	GCWGC	1 cut(s)	804
ArsI	GACNNNNNNTTYG	4 cut(s)	421, 453, 508, 540
Asp700I	GAANNNNTTC	2 cut(s)	430, 797
AspS9I	GGNCC	3 cut(s)	171, 443, 605
AsuHPI	GGTGA	2 cut(s)	70, 800
AvaII	GGWCC	2 cut(s)	171, 443
AxyI	CCTNAGG	1 cut(s)	531
BanII	GRGCYC	2 cut(s)	119, 573
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	725
BbvI	GCAGC	1 cut(s)	816
BccI	CCATC	4 cut(s)	275, 307, 373, 653
BceAI	ACGGC	2 cut(s)	392, 801
BcoDI	GTCTC	3 cut(s)	468, 509, 554
BfaI	CTAG	2 cut(s)	30, 72
BfmI	CTRYAG	1 cut(s)	802
BisI	GCNGC	1 cut(s)	805
BlsI	GCNGC	1 cut(s)	806
Bme18I	GGWCC	2 cut(s)	171, 443
BmgT120I	GGNCC	3 cut(s)	171, 443, 605
BmiI	GGNNCC	1 cut(s)	444
BmrI	ACTGGG	1 cut(s)	229
BmsI	GCATC	1 cut(s)	253
BmuI	ACTGGG	1 cut(s)	229
Bpu10I	CCTNAGC	1 cut(s)	725
BpuEI	CTTGAG	1 cut(s)	326
BsaBI	GATNNNNATC	1 cut(s)	350
BsaWI	WCCGGW	1 cut(s)	684
BsaXI	ACNNNNNCTCC	4 cut(s)	418, 448, 818, 848
Bsc4I	CCNNNNNNNGG	4 cut(s)	149, 492, 684, 823
Bse1I	ACTGG	1 cut(s)	224
Bse21I	CCTNAGG	1 cut(s)	531
Bse3DI	GCAATG	1 cut(s)	739
Bse8I	GATNNNNATC	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	684
BseGI	GGATG	1 cut(s)	365
BseJI	GATNNNNATC	1 cut(s)	350
BseLI	CCNNNNNNNGG	4 cut(s)	149, 492, 684, 823
BseMI	GCAATG	1 cut(s)	739
BseMII	CTCAG	4 cut(s)	545, 567, 705, 739
BseNI	ACTGG	1 cut(s)	224
BseRI	GAGGAG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	816
BshFI	GGCC	3 cut(s)	249, 459, 607
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	4 cut(s)	456, 473, 507, 685
BslFI	GGGAC	2 cut(s)	236, 508
BslI	CCNNNNNNNGG	4 cut(s)	149, 492, 684, 823
BsmAI	GTCTC	3 cut(s)	468, 509, 554
BsmFI	GGGAC	2 cut(s)	236, 508
BsmI	GAATGC	1 cut(s)	818
BsnI	GGCC	3 cut(s)	249, 459, 607
Bsp1286I	GDGCHC	2 cut(s)	119, 573
Bsp13I	TCCGGA	1 cut(s)	684
Bsp1407I	TGTACA	1 cut(s)	780
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	3 cut(s)	249, 459, 607
BspCNI	CTCAG	4 cut(s)	544, 568, 706, 738
BspEI	TCCGGA	1 cut(s)	684
BspLI	GGNNCC	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	806
BspPI	GGATC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	739
BsrGI	TGTACA	1 cut(s)	780
BsrI	ACTGG	1 cut(s)	224
BssMI	GATC	1 cut(s)	289
Bst4CI	ACNGT	2 cut(s)	11, 499
Bst6I	CTCTTC	2 cut(s)	388, 457
BstAPI	GCANNNNNTGC	1 cut(s)	813
BstAUI	TGTACA	1 cut(s)	780
BstDEI	CTNAG	7 cut(s)	138, 155, 477, 531, 576, 714, 725
BstF5I	GGATG	1 cut(s)	365
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	3 cut(s)	468, 509, 554
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	2 cut(s)	741, 813
BstNSI	RCATGY	1 cut(s)	781
BstSFI	CTRYAG	1 cut(s)	802
BstV1I	GCAGC	1 cut(s)	816
Bsu36I	CCTNAGG	1 cut(s)	531
BsuRI	GGCC	3 cut(s)	249, 459, 607
BtsCI	GGATG	1 cut(s)	365
BtsI	GCAGTG	1 cut(s)	814
BtsIMutI	CAGTG	2 cut(s)	217, 814
CaiI	CAGNNNCTG	1 cut(s)	732
Cfr13I	GGNCC	3 cut(s)	171, 443, 605
Csp6I	GTAC	1 cut(s)	781
CviAII	CATG	2 cut(s)	602, 778
CviQI	GTAC	1 cut(s)	781
DdeI	CTNAG	7 cut(s)	138, 155, 477, 531, 576, 714, 725
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
Eam1104I	CTCTTC	2 cut(s)	388, 457
EarI	CTCTTC	2 cut(s)	388, 457
EciI	GGCGGA	1 cut(s)	20
Ecl136II	GAGCTC	1 cut(s)	571
Eco24I	GRGCYC	2 cut(s)	119, 573
Eco47I	GGWCC	2 cut(s)	171, 443
Eco53kI	GAGCTC	1 cut(s)	571
Eco57I	CTGAAG	1 cut(s)	123
Eco81I	CCTNAGG	1 cut(s)	531
EcoICRI	GAGCTC	1 cut(s)	571
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT38I	GRGCYC	2 cut(s)	119, 573
FaeI	CATG	2 cut(s)	605, 781
FaiI	YATR	5 cut(s)	113, 585, 603, 627, 779
FalI	AAGNNNNNCTT	4 cut(s)	131, 163, 415, 447
FaqI	GGGAC	2 cut(s)	236, 508
FatI	CATG	2 cut(s)	601, 777
Fnu4HI	GCNGC	1 cut(s)	805
FokI	GGATG	1 cut(s)	352
FriOI	GRGCYC	2 cut(s)	119, 573
Fsp4HI	GCNGC	1 cut(s)	805
FspBI	CTAG	2 cut(s)	30, 72
GluI	GCNGC	1 cut(s)	805
HaeIII	GGCC	3 cut(s)	249, 459, 607
HapII	CCGG	4 cut(s)	456, 473, 507, 685
Hin1II	CATG	2 cut(s)	605, 781
HinfI	GANTC	6 cut(s)	176, 233, 346, 417, 517, 751
HpaII	CCGG	4 cut(s)	456, 473, 507, 685
HphI	GGTGA	2 cut(s)	70, 800
Hpy166II	GTNNAC	2 cut(s)	69, 335
Hpy188I	TCNGA	8 cut(s)	60, 97, 175, 289, 388, 416, 577, 715
Hpy188III	TCNNGA	4 cut(s)	131, 343, 685, 824
Hpy8I	GTNNAC	2 cut(s)	69, 335
HpyAV	CCTTC	5 cut(s)	33, 100, 682, 787, 839
HpyCH4III	ACNGT	2 cut(s)	11, 499
HpyCH4IV	ACGT	1 cut(s)	696
HpyCH4V	TGCA	2 cut(s)	744, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	741, 813
HpyF3I	CTNAG	7 cut(s)	138, 155, 477, 531, 576, 714, 725
HpySE526I	ACGT	1 cut(s)	696
Hsp92II	CATG	2 cut(s)	605, 781
Kpn2I	TCCGGA	1 cut(s)	684
Kzo9I	GATC	1 cut(s)	289
LmnI	GCTCC	2 cut(s)	568, 734
Lsp1109I	GCAGC	1 cut(s)	816
LweI	GCATC	1 cut(s)	253
MaeI	CTAG	2 cut(s)	30, 72
MaeII	ACGT	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	11, 704
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	6 cut(s)	40, 368, 375, 444, 760, 854
MhlI	GDGCHC	2 cut(s)	119, 573
MluCI	AATT	2 cut(s)	227, 270
MlyI	GAGTC	2 cut(s)	227, 511
MmeI	TCCRAC	1 cut(s)	816
MroI	TCCGGA	1 cut(s)	684
MroXI	GAANNNNTTC	2 cut(s)	430, 797
MslI	CAYNNNNRTG	1 cut(s)	776
MspI	CCGG	4 cut(s)	456, 473, 507, 685
Mva1269I	GAATGC	1 cut(s)	818
MwoI	GCNNNNNNNGC	2 cut(s)	741, 813
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	2 cut(s)	605, 781
NlaIV	GGNNCC	1 cut(s)	444
NspI	RCATGY	1 cut(s)	781
PciI	ACATGT	1 cut(s)	777
PctI	GAATGC	1 cut(s)	818
PdmI	GAANNNNTTC	2 cut(s)	430, 797
PfeI	GAWTC	4 cut(s)	176, 346, 417, 751
PflMI	CCANNNNNTGG	1 cut(s)	149
PkrI	GCNGC	1 cut(s)	806
PleI	GAGTC	2 cut(s)	227, 511
PpsI	GAGTC	2 cut(s)	227, 511
PpuMI	RGGWCCY	1 cut(s)	443
PscI	ACATGT	1 cut(s)	777
Psp124BI	GAGCTC	1 cut(s)	573
Psp5II	RGGWCCY	1 cut(s)	443
PspN4I	GGNNCC	1 cut(s)	444
PspPI	GGNCC	3 cut(s)	171, 443, 605
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	1 cut(s)	806
PstNI	CAGNNNCTG	1 cut(s)	732
RsaI	GTAC	1 cut(s)	782
RsaNI	GTAC	1 cut(s)	781
RseI	CAYNNNNRTG	1 cut(s)	776
SacI	GAGCTC	1 cut(s)	573
SatI	GCNGC	1 cut(s)	805
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	3 cut(s)	171, 443, 605
SchI	GAGTC	2 cut(s)	227, 511
SduI	GDGCHC	2 cut(s)	119, 573
SfaNI	GCATC	1 cut(s)	253
SfcI	CTRYAG	1 cut(s)	802
SinI	GGWCC	2 cut(s)	171, 443
SmiMI	CAYNNNNRTG	1 cut(s)	776
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	2 cut(s)	227, 270
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	2 cut(s)	30, 72
SstI	GAGCTC	1 cut(s)	573
TaaI	ACNGT	2 cut(s)	11, 499
TaiI	ACGT	1 cut(s)	699
TaqI	TCGA	1 cut(s)	420
TasI	AATT	2 cut(s)	227, 270
TatI	WGTACW	1 cut(s)	780
TfiI	GAWTC	4 cut(s)	176, 346, 417, 751
TscAI	CASTG	2 cut(s)	224, 814
TseI	GCWGC	1 cut(s)	804
TspDTI	ATGAA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	224, 814
Van91I	CCANNNNNTGG	1 cut(s)	149
VpaK11BI	GGWCC	2 cut(s)	171, 443
XceI	RCATGY	1 cut(s)	781
XmnI	GAANNNNTTC	2 cut(s)	430, 797
XspI	CTAG	2 cut(s)	30, 72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.