Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0009892

Physical Location & Seq

Genomic Coordinates Forward (+)

24708903 .. 24711921

Gene Structure 3019 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g22340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2145 bp

ATGGCTAAAATCTCTAAGGCTCTCATGAAATCAAGATTATGTAGAAGTGAAATATGTGTGATACTTATTGTATCGGTTTATCACAAAAAGATGAACAATTCAAGATCAACTATATCCATTAGGTCATCAGGTAAACCCAATAAGTACTCGCTAAGAAAGGTTCAAGTCCAAAAGACACATCTTCTAATGCATATTTTGTTTTTTCCATACAAATATGGGGTACTGTTGGAGTTTGTATGCAAATTGTCACATATCGTTAGTGTACATATTATCAAGATACTTGATATTATATTCTTCATATTAATAGTAATTTGGTCCAAAATAAAAATTTCAATTTTATCTTTTCAATTTGAATTTAACTTATGTGGGCATATCCTATATAATACCAAAGAGGTCAGACACGAAAATAATAATATACATATATTGCATATAATATACATATTATTTGGAAGAGAAAGCATTCAAAAGTTCACCAAAATTCAAAGCTCTGGTGCTGAAACTTTGAATTACAGATATAGGGGCACAATTCTGTCTTTAGGACACTGCAAAATCTGCAAGCCTCTATCTTTTCAATCAAGTCAGTTTTCCTACTTTCTTGTTTCTTTTATGGATTATAGTTATTTCAATTGTTTATTACAATTTGTTATCAACAACGTTGTATTCTCATTGTTTGTTCCAACATTATATTGTTGGCCACGTATCTTTTCGAAAAGTTCTATCACTTTCCTACCGTGTCCATTCGATGTCTGTGGTTCCATGTTGTCCCTGCTCCGTCCCAGTATGCCCATTTTCAGCCTAATCAACGTAGTAAGTTCCAACAAAAAATATAATATAGAAAGCAATAATTTGATTGGTCCAGAACATAATTCCAATATATTAGTTGGTTGGTGGTCACATAATTCCAATATATTAGTTGCAACTGGAATCTTAACTTTTGGACCAGTTCACTGCACTCATAAACAAAAAGAGATTCCCCACTTTGGTTGGACCCTAATAAAGATTACTTTTAGACCTCGTTTGACACATCAGATAGTACAACCATATAGTGTTAATAATACGAAACGGGTGTTTGGTGATTATCTTATACCCCTCACACCCGGCTATTTACCCTGTCTAAAACCACGAGACAATTTAGTCAGGCTCGCTCTCTCCTTGCTCTCCGAATGCAGTGTCGGTCTTCCCAGGTTCCGCCCCTCCCTCATTCATCTTCTTGTTCGTCTGAATCTCGGATTATCTTCTCATTCATCTTCTTCTTCTTCCCAGGTTCCGCCCCTCCCTCTCAGCCGTTATCTAACACAACAGAGCTTTAAAGTCTGCAACTTTCTGCCATTTTCTAGAGCTTCAAAGCTTGTGAGTAATTTACTAGGTGAAAACCAAATTCAAACTCCTACAAAATTCATATGGATTTTAAAGAATTTGAATGGATTGTGGTGGATTGTGGTGGAAGGATTTGAAATCCAAGGGGGTGAGGTTGGATTCTTTTTAGTCTTGGTTATACTTTTAATTGACTACACTAGGATTTTAAAGTCTTTTAAAATCCTCTCAAATCCGAGTTATTTTTCTTGTTTTGCGGAAGGATTTCAAGAACTAGATGAAAAACACACAAAACTCACTTCCTCTTTCTTCGCGAATCCAAGATTGTCCACCAACTTCACCTCAAAAGCCGTCTCTAAATCCGACGGCCGCCATCAGCCCAACCTCTATCCTCGAAACGAAGCCGTTTTTGAGCCTCCAAACCCCTTTTTGTCCGAATCAAACATCCCTAGAACCCTAGAAATTTGGGGAGGGAGTGACGGGAGGAAAGGATCGGAAATCTGTGAAGAAGATCGGCAATGTGGGGAGGGAAGAGAGAAAAGTTCATCAAACAATAAAAAGATTTGTCAAATTTTTTTTTCTTCCCTTTTCTTATCCAGTTCAGTACCAAACACATTAGTACTATCCAGTGACTATTTATGCTATCCAACAGAAATAGTTAGTACAGTCCGAACTGCCAAACGAGGCCTTTTTATTGACCCAAACGGAAGAAAAAAAAAAAAAAAAAAAAAAAAAACATATTTTGCATACTGTTTGTCTTTGAACCTCTCTTTGAACTTGTACCCACTCATGCTAAAAAGAACTTGGAACTTGGACTTAGAGCTATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-FLZ

Protein Analysis

715

Amino Acids

81.77

Weight (kDa)

9.66

Isoelectric Point (pI)

46.08

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009892)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22550
fragaria_vesca	FvH4_4g16170
malus_domestica	MD13G1195400.v1.1 MD16G1196000.v1.1
prunus_persica	Prupe.1G016000_v2.0.a1 Prupe.1G016000_v2.0.a1
pyrus_communis	pycom04g03200 pycom05g22340 pycom07g01420 pycom13g16750 pycom16g16520
rosa_chinensis	RchiOBHm_Chr4g0415801
rosa_laevigata	RLG00000008041
rosa_multiflora	Rmu_sc0003438.1_g000008
rosa_roxburghii	Rroxscaffold_5G00359640
rosa_rugosa	Rorug04G0136600
rosa_samantha	Rh4AG197800 Rh4BG196000 Rh4CG208800 Rh4DG195700
rosa_wichuraiana	Rw4G016790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1133
AccII	CGCG	1 cut(s)	1628
AciI	CCGC	4 cut(s)	1189, 1268, 1571, 1684
AclI	AACGTT	1 cut(s)	654
AclWI	GGATC	1 cut(s)	1813
AcoI	YGGCCR	2 cut(s)	692, 1681
AcsI	RAATTY	8 cut(s)	327, 353, 477, 1377, 1394, 1414, 1776, 1884
AfaI	GTAC	8 cut(s)	146, 222, 264, 1035, 1920, 1935, 1978, 2096
AfiI	CCNNNNNNNGG	1 cut(s)	980
AjnI	CCWGG	2 cut(s)	1181, 1260
AluBI	AGCT	5 cut(s)	486, 1305, 1340, 1348, 2137
AluI	AGCT	5 cut(s)	486, 1305, 1340, 1348, 2137
Alw26I	GTCTC	2 cut(s)	1119, 1672
AlwI	GGATC	1 cut(s)	1813
AoxI	GGCC	3 cut(s)	692, 1681, 1999
ApoI	RAATTY	8 cut(s)	327, 353, 477, 1377, 1394, 1414, 1776, 1884
ArsI	GACNNNNNNTTYG	2 cut(s)	1155, 1187
AseI	ATTAAT	1 cut(s)	302
Asp700I	GAANNNNTTC	2 cut(s)	459, 1578
AspS9I	GGNCC	4 cut(s)	315, 854, 938, 987
AsuC2I	CCSGG	1 cut(s)	1098
AsuHPI	GGTGA	5 cut(s)	463, 1085, 1379, 1478, 1645
AsuII	TTCGAA	1 cut(s)	707
AvaII	GGWCC	4 cut(s)	315, 854, 938, 987
BaeGI	GKGCMC	1 cut(s)	524
BalI	TGGCCA	1 cut(s)	694
BauI	CACGAG	1 cut(s)	1122
BbsI	GAAGAC	1 cut(s)	1169
BccI	CCATC	1 cut(s)	1695
BceAI	ACGGC	4 cut(s)	1269, 1649, 1696, 1703
BciT130I	CCWGG	2 cut(s)	1183, 1262
BcnI	CCSGG	1 cut(s)	1098
BcoDI	GTCTC	2 cut(s)	1119, 1672
BfaI	CTAG	6 cut(s)	1335, 1364, 1515, 1589, 1764, 1772
BisI	GCNGC	1 cut(s)	1684
BlsI	GCNGC	1 cut(s)	1685
BmcAI	AGTACT	2 cut(s)	146, 1935
Bme1390I	CCNGG	3 cut(s)	1098, 1183, 1262
Bme18I	GGWCC	4 cut(s)	315, 854, 938, 987
BmgT120I	GGNCC	4 cut(s)	315, 854, 938, 987
BmiI	GGNNCC	4 cut(s)	754, 989, 1187, 1266
BmrFI	CCNGG	3 cut(s)	1098, 1183, 1262
BmrI	ACTGGG	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	771
BpiI	GAAGAC	1 cut(s)	1169
Bpu14I	TTCGAA	1 cut(s)	707
BpuMI	CCSGG	1 cut(s)	1098
BsaAI	YACGTR	1 cut(s)	698
BsaJI	CCNNGG	3 cut(s)	1181, 1260, 1459
Bsc4I	CCNNNNNNNGG	1 cut(s)	980
Bse1I	ACTGG	5 cut(s)	777, 925, 941, 1911, 1941
Bse3DI	GCAATG	1 cut(s)	1838
BseBI	CCWGG	2 cut(s)	1183, 1262
BseDI	CCNNGG	3 cut(s)	1181, 1260, 1459
BseGI	GGATG	1 cut(s)	1758
BseLI	CCNNNNNNNGG	1 cut(s)	980
BseMI	GCAATG	1 cut(s)	1838
BseMII	CTCAG	1 cut(s)	1294
BseNI	ACTGG	5 cut(s)	777, 925, 941, 1911, 1941
BseSI	GKGCMC	1 cut(s)	524
BseX3I	CGGCCG	1 cut(s)	1681
BsgI	GTGCAG	1 cut(s)	934
Bsh1236I	CGCG	1 cut(s)	1628
Bsh1285I	CGRYCG	1 cut(s)	1684
BshFI	GGCC	3 cut(s)	694, 1683, 2001
BsiEI	CGRYCG	1 cut(s)	1684
BsiSI	CCGG	1 cut(s)	1098
BslFI	GGGAC	2 cut(s)	748, 759
BslI	CCNNNNNNNGG	1 cut(s)	980
BsmAI	GTCTC	2 cut(s)	1119, 1672
BsmBI	CGTCTC	1 cut(s)	1672
BsmFI	GGGAC	2 cut(s)	748, 759
BsmI	GAATGC	2 cut(s)	459, 1169
BsnI	GGCC	3 cut(s)	694, 1683, 2001
Bsp119I	TTCGAA	1 cut(s)	707
Bsp1286I	GDGCHC	1 cut(s)	524
Bsp1407I	TGTACA	1 cut(s)	262
Bsp143I	GATC	3 cut(s)	104, 1805, 1825
Bsp68I	TCGCGA	1 cut(s)	1628
BspACI	CCGC	4 cut(s)	1189, 1268, 1571, 1684
BspANI	GGCC	3 cut(s)	694, 1683, 2001
BspCNI	CTCAG	1 cut(s)	1293
BspFNI	CGCG	1 cut(s)	1628
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	754, 989, 1187, 1266
BspPI	GGATC	1 cut(s)	1813
BspT104I	TTCGAA	1 cut(s)	707
BsrDI	GCAATG	1 cut(s)	1838
BsrGI	TGTACA	1 cut(s)	262
BsrI	ACTGG	5 cut(s)	777, 925, 941, 1911, 1941
BssECI	CCNNGG	3 cut(s)	1181, 1260, 1459
BssMI	GATC	3 cut(s)	104, 1805, 1825
BssSI	CACGAG	1 cut(s)	1122
BssT1I	CCWWGG	1 cut(s)	1459
Bst2BI	CACGAG	1 cut(s)	1122
Bst2UI	CCWGG	2 cut(s)	1183, 1262
Bst4CI	ACNGT	4 cut(s)	225, 732, 1981, 2066
Bst6I	CTCTTC	2 cut(s)	445, 1840
BstAPI	GCANNNNNTGC	1 cut(s)	552
BstAUI	TGTACA	1 cut(s)	262
BstBAI	YACGTR	1 cut(s)	698
BstBI	TTCGAA	1 cut(s)	707
BstC8I	GCNNGC	2 cut(s)	557, 1143
BstDEI	CTNAG	4 cut(s)	15, 152, 1280, 2131
BstF5I	GGATG	1 cut(s)	1758
BstFNI	CGCG	1 cut(s)	1628
BstKTI	GATC	3 cut(s)	107, 1808, 1828
BstMAI	GTCTC	2 cut(s)	1119, 1672
BstMBI	GATC	3 cut(s)	104, 1805, 1825
BstMCI	CGRYCG	1 cut(s)	1684
BstMWI	GCNNNNNNNGC	1 cut(s)	552
BstNI	CCWGG	2 cut(s)	1183, 1262
BstSCI	CCNGG	3 cut(s)	1096, 1181, 1260
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	1628
BstV2I	GAAGAC	1 cut(s)	1169
BstZI	CGGCCG	1 cut(s)	1681
BsuRI	GGCC	3 cut(s)	694, 1683, 2001
BtsCI	GGATG	1 cut(s)	1758
BtsI	GCAGTG	3 cut(s)	541, 946, 1174
BtsIMutI	CAGTG	4 cut(s)	541, 946, 1174, 1948
BtuMI	TCGCGA	1 cut(s)	1628
Cac8I	GCNNGC	2 cut(s)	557, 1143
CciI	TCATGA	1 cut(s)	24
Cfr13I	GGNCC	4 cut(s)	315, 854, 938, 987
Csp6I	GTAC	8 cut(s)	145, 221, 263, 1034, 1919, 1934, 1977, 2095
CspCI	CAANNNNNGTGG	2 cut(s)	965, 1000
CviAII	CATG	3 cut(s)	25, 757, 2104
CviQI	GTAC	8 cut(s)	145, 221, 263, 1034, 1919, 1934, 1977, 2095
DdeI	CTNAG	4 cut(s)	15, 152, 1280, 2131
DpnI	GATC	3 cut(s)	106, 1807, 1827
DpnII	GATC	3 cut(s)	104, 1805, 1825
DraI	TTTAAA	4 cut(s)	1309, 1410, 1524, 1534
DrdI	GACNNNNNNGTC	1 cut(s)	1133
DseDI	GACNNNNNNGTC	1 cut(s)	1133
EaeI	YGGCCR	2 cut(s)	692, 1681
EagI	CGGCCG	1 cut(s)	1681
Eam1104I	CTCTTC	2 cut(s)	445, 1840
EarI	CTCTTC	2 cut(s)	445, 1840
EciI	GGCGGA	2 cut(s)	1178, 1257
EclXI	CGGCCG	1 cut(s)	1681
Eco130I	CCWWGG	1 cut(s)	1459
Eco147I	AGGCCT	1 cut(s)	2001
Eco47I	GGWCC	4 cut(s)	315, 854, 938, 987
Eco52I	CGGCCG	1 cut(s)	1681
EcoRII	CCWGG	2 cut(s)	1181, 1260
EcoT14I	CCWWGG	1 cut(s)	1459
EcoT22I	ATGCAT	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	1459
Esp3I	CGTCTC	1 cut(s)	1672
FaeI	CATG	3 cut(s)	28, 760, 2107
FaqI	GGGAC	2 cut(s)	748, 759
FatI	CATG	3 cut(s)	24, 756, 2103
FauNDI	CATATG	1 cut(s)	1400
Fnu4HI	GCNGC	1 cut(s)	1684
FokI	GGATG	1 cut(s)	1745
Fsp4HI	GCNGC	1 cut(s)	1684
FspBI	CTAG	6 cut(s)	1335, 1364, 1515, 1589, 1764, 1772
GluI	GCNGC	1 cut(s)	1684
HaeIII	GGCC	3 cut(s)	694, 1683, 2001
HapII	CCGG	1 cut(s)	1098
Hin1II	CATG	3 cut(s)	28, 760, 2107
HindIII	AAGCTT	1 cut(s)	1346
HinfI	GANTC	6 cut(s)	924, 970, 1222, 1476, 1630, 1751
HpaII	CCGG	1 cut(s)	1098
HphI	GGTGA	5 cut(s)	463, 1085, 1379, 1478, 1645
Hpy166II	GTNNAC	5 cut(s)	134, 263, 471, 946, 1644
Hpy188III	TCNNGA	8 cut(s)	25, 33, 102, 274, 857, 1335, 1583, 1627
Hpy8I	GTNNAC	5 cut(s)	134, 263, 471, 946, 1644
Hpy99I	CGWCG	1 cut(s)	1682
HpyAV	CCTTC	2 cut(s)	1439, 1568
HpyCH4III	ACNGT	4 cut(s)	225, 732, 1981, 2066
HpyCH4IV	ACGT	3 cut(s)	654, 697, 804
HpyF10VI	GCNNNNNNNGC	1 cut(s)	552
HpyF3I	CTNAG	4 cut(s)	15, 152, 1280, 2131
HpySE526I	ACGT	3 cut(s)	654, 697, 804
Hsp92II	CATG	3 cut(s)	28, 760, 2107
Kzo9I	GATC	3 cut(s)	104, 1805, 1825
LmnI	GCTCC	1 cut(s)	774
MaeI	CTAG	6 cut(s)	1335, 1364, 1515, 1589, 1764, 1772
MaeII	ACGT	3 cut(s)	654, 697, 804
MaeIII	GTNAC	4 cut(s)	246, 891, 1790, 1943
MalI	GATC	3 cut(s)	106, 1807, 1827
MboI	GATC	3 cut(s)	104, 1805, 1825
MfeI	CAATTG	1 cut(s)	625
MhlI	GDGCHC	1 cut(s)	524
MlsI	TGGCCA	1 cut(s)	694
MluNI	TGGCCA	1 cut(s)	694
MmeI	TCCRAC	7 cut(s)	207, 701, 840, 965, 1453, 1701, 1985
Mox20I	TGGCCA	1 cut(s)	694
Mph1103I	ATGCAT	1 cut(s)	192
MroXI	GAANNNNTTC	2 cut(s)	459, 1578
MscI	TGGCCA	1 cut(s)	694
MseI	TTAA	9 cut(s)	302, 357, 929, 1050, 1308, 1409, 1502, 1523, 1533
Msp20I	TGGCCA	1 cut(s)	694
MspI	CCGG	1 cut(s)	1098
MspR9I	CCNGG	3 cut(s)	1098, 1183, 1262
MunI	CAATTG	1 cut(s)	625
Mva1269I	GAATGC	2 cut(s)	459, 1169
MvaI	CCWGG	2 cut(s)	1183, 1262
MvnI	CGCG	1 cut(s)	1628
MwoI	GCNNNNNNNGC	1 cut(s)	552
NciI	CCSGG	1 cut(s)	1098
NdeI	CATATG	1 cut(s)	1400
NdeII	GATC	3 cut(s)	104, 1805, 1825
NlaIII	CATG	3 cut(s)	28, 760, 2107
NlaIV	GGNNCC	4 cut(s)	754, 989, 1187, 1266
NmuCI	GTSAC	4 cut(s)	246, 891, 1790, 1943
NruI	TCGCGA	1 cut(s)	1628
NsiI	ATGCAT	1 cut(s)	192
NspV	TTCGAA	1 cut(s)	707
PagI	TCATGA	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	2001
PctI	GAATGC	2 cut(s)	459, 1169
PdmI	GAANNNNTTC	2 cut(s)	459, 1578
PfeI	GAWTC	6 cut(s)	924, 970, 1222, 1476, 1630, 1751
PkrI	GCNGC	1 cut(s)	1685
Ppu21I	YACGTR	1 cut(s)	698
PshBI	ATTAAT	1 cut(s)	302
Psp1406I	AACGTT	1 cut(s)	654
Psp6I	CCWGG	2 cut(s)	1181, 1260
PspGI	CCWGG	2 cut(s)	1181, 1260
PspN4I	GGNNCC	4 cut(s)	754, 989, 1187, 1266
PspPI	GGNCC	4 cut(s)	315, 854, 938, 987
RruI	TCGCGA	1 cut(s)	1628
RsaI	GTAC	8 cut(s)	146, 222, 264, 1035, 1920, 1935, 1978, 2096
RsaNI	GTAC	8 cut(s)	145, 221, 263, 1034, 1919, 1934, 1977, 2095
SaqAI	TTAA	9 cut(s)	302, 357, 929, 1050, 1308, 1409, 1502, 1523, 1533
SatI	GCNGC	1 cut(s)	1684
Sau3AI	GATC	3 cut(s)	104, 1805, 1825
Sau96I	GGNCC	4 cut(s)	315, 854, 938, 987
ScaI	AGTACT	2 cut(s)	146, 1935
ScrFI	CCNGG	3 cut(s)	1098, 1183, 1262
SduI	GDGCHC	1 cut(s)	524
SfuI	TTCGAA	1 cut(s)	707
SinI	GGWCC	4 cut(s)	315, 854, 938, 987
SseBI	AGGCCT	1 cut(s)	2001
SsiI	CCGC	4 cut(s)	1189, 1268, 1571, 1684
SspMI	CTAG	6 cut(s)	1335, 1364, 1515, 1589, 1764, 1772
StuI	AGGCCT	1 cut(s)	2001
StyD4I	CCNGG	3 cut(s)	1096, 1181, 1260
StyI	CCWWGG	1 cut(s)	1459
TaaI	ACNGT	4 cut(s)	225, 732, 1981, 2066
TaiI	ACGT	3 cut(s)	657, 700, 807
TaqI	TCGA	3 cut(s)	707, 741, 1708
TaqII	GACCGA	1 cut(s)	1163
TatI	WGTACW	5 cut(s)	144, 262, 1033, 1933, 1976
TauI	GCSGC	1 cut(s)	1686
TfiI	GAWTC	6 cut(s)	924, 970, 1222, 1476, 1630, 1751
Tru1I	TTAA	9 cut(s)	302, 357, 929, 1050, 1308, 1409, 1502, 1523, 1533
Tru9I	TTAA	9 cut(s)	302, 357, 929, 1050, 1308, 1409, 1502, 1523, 1533
TscAI	CASTG	4 cut(s)	548, 953, 1174, 1948
TseFI	GTSAC	4 cut(s)	246, 891, 1790, 1943
Tsp45I	GTSAC	4 cut(s)	246, 891, 1790, 1943
TspDTI	ATGAA	8 cut(s)	41, 107, 286, 1193, 1233, 1387, 1608, 1848
TspGWI	ACGGA	2 cut(s)	761, 2034
TspRI	CASTG	4 cut(s)	548, 953, 1174, 1948
VpaK11BI	GGWCC	4 cut(s)	315, 854, 938, 987
VspI	ATTAAT	1 cut(s)	302
XapI	RAATTY	8 cut(s)	327, 353, 477, 1377, 1394, 1414, 1776, 1884
XbaI	TCTAGA	1 cut(s)	1334
XmnI	GAANNNNTTC	2 cut(s)	459, 1578
XspI	CTAG	6 cut(s)	1335, 1364, 1515, 1589, 1764, 1772
ZrmI	AGTACT	2 cut(s)	146, 1935
Zsp2I	ATGCAT	1 cut(s)	192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.