MD16G1196000.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0009892
Physical Location & Seq
Reverse (-)
17427929 .. 17430379
2451 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1196000.v1.1.491

Sequence Viewer

Length: 867 bp
ATGGCGGAAACCAGCTCTCTTCTCTCTCCCAGAGAAAAACATACGAAACCCACTTCCTCTATCTTCGCGAATCCGAGATTGTTCACCAGCTTCACCTCGAAATCGGTCTCTGAAACTGACGCCGTGATGAGCCCAACCTCCATCCTCGAAACGAAGCCATTTTTGGGCCTCCGAAACCCCTTCTGGTCCGAATCGAACACCCCCAGAACCCCGGAGCCCGAATCCAGACGCATCCACTGGGACAAATTGGACTCCAAAGGCATCGGCCTCGCCATCGTCGACGCCCTCAACGACTCCGACCCGAAACCGTCAAAGCCCCAAACCCGAATGGTGATTTTCGGGTCGCAGCTCAAGATCCAAATCCCTCCTCTGCAACCCTACCCTTCCGAATCACCGAAGTATCCGGCCGACTTTAGCAACAAGACGGAGAATTCCCATCTGGGTTCTTCCTCCTCCGTCTCGTCTCGGTCGCCGGAGAAGACATCGCCGTTCGAATCAGCGAGTTCCGGGCTCGAGACGATGAATTCGACCCGGGTTTTCACTAGCTGTCTCTCTGTCAGTGAAATGGAGCTCTCAGAGGATTACACGTGTGTGATTTCCCACGGTCCGAACCCGAAAACCACGCACATCTTTGACAATTGCATCGTGGAGAGCTCCGATGGCGTCCCGGAGTTTTCTCCCGGCAGGAAGTCAAACGGGTCAAGCTATCTGTCTGAGAGTTTTCTCAGCTTCTGTGACAATTGCAAGAAGAATCTTGGCCACGGCAAAGATATTTTCATGTACAGGGGTGAGAAGGCATTCTGCAGCCGTGAGTGCCGTTACCAGGAGATGTTGTTGGAGGAGGGAGCGGATAGACTGGCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

289

Amino Acids

31.83

Weight (kDa)

5.93

Isoelectric Point (pI)

56.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 233 - 281 2.6e-21 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 848
AccI GTMKAC 1 cut(s) 279
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 5, 848
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 2 cut(s) 405, 757
AcsI RAATTY 2 cut(s) 430, 523
AcvI CACGTG 1 cut(s) 588
AcyI GRCGYC 3 cut(s) 120, 282, 663
AfaI GTAC 1 cut(s) 782
AfiI CCNNNNNNNGG 2 cut(s) 164, 823
AflIII ACRYGT 2 cut(s) 585, 587
AjnI CCWGG 1 cut(s) 822
AjuI GAANNNNNNNTTGG 2 cut(s) 146, 178
AleI CACNNNNGTG 1 cut(s) 590
AluBI AGCT 9 cut(s) 15, 90, 349, 546, 571, 654, 705, 729, 863
AluI AGCT 9 cut(s) 15, 90, 349, 546, 571, 654, 705, 729, 863
Alw21I GWGCWC 2 cut(s) 573, 656
Alw26I GTCTC 5 cut(s) 112, 463, 468, 509, 554
AlwI GGATC 1 cut(s) 349
AlwNI CAGNNNCTG 1 cut(s) 732
Ama87I CYCGRG 2 cut(s) 512, 531
AoxI GGCC 4 cut(s) 166, 265, 405, 757
ApeKI GCWGC 3 cut(s) 346, 804, 860
ApoI RAATTY 2 cut(s) 430, 523
ArsI GACNNNNNNTTYG 2 cut(s) 508, 540
Asp700I GAANNNNTTC 1 cut(s) 797
AspS9I GGNCC 3 cut(s) 166, 186, 605
AsuC2I CCSGG 6 cut(s) 212, 508, 532, 533, 668, 681
AsuHPI GGTGA 5 cut(s) 76, 85, 343, 384, 800
AsuII TTCGAA 1 cut(s) 492
AvaI CYCGRG 2 cut(s) 512, 531
AvaII GGWCC 2 cut(s) 186, 605
BaeI ACNNNNGTAYC 2 cut(s) 383, 416
BalI TGGCCA 1 cut(s) 759
BanII GRGCYC 5 cut(s) 134, 219, 513, 573, 656
BbrPI CACGTG 1 cut(s) 588
BbsI GAAGAC 1 cut(s) 485
Bbv12I GWGCWC 2 cut(s) 573, 656
BbvI GCAGC 2 cut(s) 358, 816
BccI CCATC 4 cut(s) 149, 281, 444, 653
BceAI ACGGC 5 cut(s) 107, 472, 778, 792, 801
BcgI CGANNNNNNTGC 2 cut(s) 250, 284
BciT130I CCWGG 1 cut(s) 824
BciVI GTATCC 1 cut(s) 411
BcnI CCSGG 6 cut(s) 212, 508, 532, 533, 668, 681
BcoDI GTCTC 5 cut(s) 112, 463, 468, 509, 554
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 802
BfuI GTATCC 1 cut(s) 411
BisI GCNGC 3 cut(s) 347, 805, 861
BlsI GCNGC 3 cut(s) 348, 806, 862
Bme1390I CCNGG 7 cut(s) 212, 508, 532, 533, 668, 681, 824
Bme18I GGWCC 2 cut(s) 186, 605
BmeT110I CYCGRG 2 cut(s) 512, 531
BmgT120I GGNCC 3 cut(s) 166, 186, 605
BmiI GGNNCC 1 cut(s) 216
BmrFI CCNGG 7 cut(s) 212, 508, 532, 533, 668, 681, 824
BmrI ACTGGG 1 cut(s) 247
BmsI GCATC 3 cut(s) 240, 270, 651
BmuI ACTGGG 1 cut(s) 247
BpiI GAAGAC 1 cut(s) 485
Bpu14I TTCGAA 1 cut(s) 492
BpuEI CTTGAG 1 cut(s) 335
BpuMI CCSGG 6 cut(s) 212, 508, 532, 533, 668, 681
BsaAI YACGTR 1 cut(s) 588
BsaBI GATNNNNATC 1 cut(s) 359
BsaHI GRCGYC 3 cut(s) 120, 282, 663
BsaI GGTCTC 1 cut(s) 112
BsaJI CCNNGG 4 cut(s) 210, 531, 601, 760
BsaXI ACNNNNNCTCC 2 cut(s) 818, 848
Bsc4I CCNNNNNNNGG 2 cut(s) 164, 823
Bse1I ACTGG 2 cut(s) 242, 861
Bse8I GATNNNNATC 1 cut(s) 359
BseBI CCWGG 1 cut(s) 824
BseDI CCNNGG 4 cut(s) 210, 531, 601, 760
BseGI GGATG 2 cut(s) 141, 231
BseJI GATNNNNATC 1 cut(s) 359
BseLI CCNNNNNNNGG 2 cut(s) 164, 823
BseMII CTCAG 3 cut(s) 588, 705, 739
BseNI ACTGG 2 cut(s) 242, 861
BseRI GAGGAG 3 cut(s) 357, 442, 854
BseX3I CGGCCG 1 cut(s) 405
BseXI GCAGC 2 cut(s) 358, 816
Bsh1236I CGCG 1 cut(s) 68
Bsh1285I CGRYCG 2 cut(s) 408, 470
BshFI GGCC 4 cut(s) 168, 267, 407, 759
BsiEI CGRYCG 2 cut(s) 408, 470
BsiHKAI GWGCWC 2 cut(s) 573, 656
BsiHKCI CYCGRG 2 cut(s) 512, 531
BsiSI CCGG 7 cut(s) 212, 404, 473, 507, 532, 668, 681
BslFI GGGAC 2 cut(s) 254, 650
BslI CCNNNNNNNGG 2 cut(s) 164, 823
BsmAI GTCTC 5 cut(s) 112, 463, 468, 509, 554
BsmBI CGTCTC 3 cut(s) 463, 468, 509
BsmFI GGGAC 2 cut(s) 254, 650
BsmI GAATGC 1 cut(s) 797
BsnI GGCC 4 cut(s) 168, 267, 407, 759
Bso31I GGTCTC 1 cut(s) 112
BsoBI CYCGRG 2 cut(s) 512, 531
Bsp119I TTCGAA 1 cut(s) 492
Bsp1286I GDGCHC 5 cut(s) 134, 219, 513, 573, 656
Bsp1407I TGTACA 1 cut(s) 780
Bsp143I GATC 1 cut(s) 354
Bsp68I TCGCGA 1 cut(s) 68
BspACI CCGC 2 cut(s) 5, 848
BspANI GGCC 4 cut(s) 168, 267, 407, 759
BspCNI CTCAG 3 cut(s) 587, 706, 738
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 1 cut(s) 216
BspMAI CTGCAG 1 cut(s) 806
BspPI GGATC 1 cut(s) 349
BspT104I TTCGAA 1 cut(s) 492
BspTNI GGTCTC 1 cut(s) 112
BsrBI CCGCTC 1 cut(s) 848
BsrGI TGTACA 1 cut(s) 780
BsrI ACTGG 2 cut(s) 242, 861
BssECI CCNNGG 4 cut(s) 210, 531, 601, 760
BssMI GATC 1 cut(s) 354
BssNI GRCGYC 3 cut(s) 120, 282, 663
Bst2UI CCWGG 1 cut(s) 824
Bst4CI ACNGT 2 cut(s) 309, 605
Bst6I CTCTTC 1 cut(s) 24
BstACI GRCGYC 3 cut(s) 120, 282, 663
BstAUI TGTACA 1 cut(s) 780
BstBAI YACGTR 1 cut(s) 588
BstBI TTCGAA 1 cut(s) 492
BstDEI CTNAG 3 cut(s) 574, 714, 725
BstDSI CCRYGG 2 cut(s) 601, 760
BstF5I GGATG 2 cut(s) 141, 231
BstFNI CGCG 1 cut(s) 68
BstKTI GATC 1 cut(s) 357
BstMAI GTCTC 5 cut(s) 112, 463, 468, 509, 554
BstMBI GATC 1 cut(s) 354
BstMCI CGRYCG 2 cut(s) 408, 470
BstMWI GCNNNNNNNGC 2 cut(s) 660, 813
BstNI CCWGG 1 cut(s) 824
BstSCI CCNGG 7 cut(s) 210, 506, 530, 531, 666, 679, 822
BstSFI CTRYAG 1 cut(s) 802
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 358, 816
BstV2I GAAGAC 1 cut(s) 485
BstX2I RGATCY 1 cut(s) 354
BstYI RGATCY 1 cut(s) 354
BstZI CGGCCG 1 cut(s) 405
BsuI GTATCC 1 cut(s) 411
BsuRI GGCC 4 cut(s) 168, 267, 407, 759
BtgI CCRYGG 2 cut(s) 601, 760
BtgZI GCGATG 1 cut(s) 468
BtsCI GGATG 2 cut(s) 141, 231
BtsIMutI CAGTG 2 cut(s) 235, 565
BtuMI TCGCGA 1 cut(s) 68
CaiI CAGNNNCTG 1 cut(s) 732
Cfr13I GGNCC 3 cut(s) 166, 186, 605
Cfr9I CCCGGG 1 cut(s) 531
CpoI CGGWCCG 1 cut(s) 605
CseI GACGC 4 cut(s) 128, 237, 290, 652
Csp6I GTAC 1 cut(s) 781
CspI CGGWCCG 1 cut(s) 605
CviAII CATG 1 cut(s) 778
CviQI GTAC 1 cut(s) 781
DdeI CTNAG 3 cut(s) 574, 714, 725
DpnI GATC 1 cut(s) 356
DpnII GATC 1 cut(s) 354
EaeI YGGCCR 2 cut(s) 405, 757
EagI CGGCCG 1 cut(s) 405
Eam1104I CTCTTC 1 cut(s) 24
EarI CTCTTC 1 cut(s) 24
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 2 cut(s) 571, 654
EclXI CGGCCG 1 cut(s) 405
Eco24I GRGCYC 5 cut(s) 134, 219, 513, 573, 656
Eco31I GGTCTC 1 cut(s) 112
Eco47I GGWCC 2 cut(s) 186, 605
Eco52I CGGCCG 1 cut(s) 405
Eco53kI GAGCTC 2 cut(s) 571, 654
Eco72I CACGTG 1 cut(s) 588
Eco88I CYCGRG 2 cut(s) 512, 531
EcoICRI GAGCTC 2 cut(s) 571, 654
EcoRI GAATTC 2 cut(s) 430, 523
EcoRII CCWGG 1 cut(s) 822
EcoT38I GRGCYC 5 cut(s) 134, 219, 513, 573, 656
Esp3I CGTCTC 3 cut(s) 463, 468, 509
FaeI CATG 1 cut(s) 781
FaiI YATR 2 cut(s) 42, 779
FaqI GGGAC 2 cut(s) 254, 650
FatI CATG 1 cut(s) 777
FblI GTMKAC 1 cut(s) 279
Fnu4HI GCNGC 3 cut(s) 347, 805, 861
FokI GGATG 2 cut(s) 128, 218
FriOI GRGCYC 5 cut(s) 134, 219, 513, 573, 656
Fsp4HI GCNGC 3 cut(s) 347, 805, 861
FspBI CTAG 1 cut(s) 543
GluI GCNGC 3 cut(s) 347, 805, 861
HaeIII GGCC 4 cut(s) 168, 267, 407, 759
HapII CCGG 7 cut(s) 212, 404, 473, 507, 532, 668, 681
HgaI GACGC 4 cut(s) 128, 237, 290, 652
Hin1I GRCGYC 3 cut(s) 120, 282, 663
Hin1II CATG 1 cut(s) 781
HincII GTYRAC 1 cut(s) 280
HindII GTYRAC 1 cut(s) 280
HinfI GANTC 8 cut(s) 70, 191, 221, 251, 293, 389, 494, 751
HpaII CCGG 7 cut(s) 212, 404, 473, 507, 532, 668, 681
HphI GGTGA 5 cut(s) 76, 85, 343, 384, 800
Hpy166II GTNNAC 2 cut(s) 84, 280
Hpy188III TCNNGA 4 cut(s) 67, 225, 352, 514
Hpy8I GTNNAC 2 cut(s) 84, 280
Hpy99I CGWCG 2 cut(s) 281, 284
HpyAV CCTTC 3 cut(s) 190, 393, 787
HpyCH4III ACNGT 2 cut(s) 309, 605
HpyCH4IV ACGT 1 cut(s) 587
HpyCH4V TGCA 4 cut(s) 373, 642, 744, 804
HpyF10VI GCNNNNNNNGC 2 cut(s) 660, 813
HpyF3I CTNAG 3 cut(s) 574, 714, 725
HpySE526I ACGT 1 cut(s) 587
Hsp92I GRCGYC 3 cut(s) 120, 282, 663
Hsp92II CATG 1 cut(s) 781
Kzo9I GATC 1 cut(s) 354
LmnI GCTCC 4 cut(s) 214, 568, 659, 845
Lsp1109I GCAGC 2 cut(s) 358, 816
LweI GCATC 3 cut(s) 240, 270, 651
MaeI CTAG 1 cut(s) 543
MaeII ACGT 1 cut(s) 587
MaeIII GTNAC 2 cut(s) 734, 818
MalI GATC 1 cut(s) 356
MbiI CCGCTC 1 cut(s) 848
MboI GATC 1 cut(s) 354
MboII GAAGA 5 cut(s) 11, 55, 438, 490, 760
MfeI CAATTG 2 cut(s) 637, 739
MflI RGATCY 1 cut(s) 354
MhlI GDGCHC 5 cut(s) 134, 219, 513, 573, 656
MlsI TGGCCA 1 cut(s) 759
MluCI AATT 5 cut(s) 245, 430, 523, 637, 739
MluNI TGGCCA 1 cut(s) 759
MlyI GAGTC 2 cut(s) 245, 287
MmeI TCCRAC 2 cut(s) 321, 816
Mox20I TGGCCA 1 cut(s) 759
MroXI GAANNNNTTC 1 cut(s) 797
MscI TGGCCA 1 cut(s) 759
MslI CAYNNNNRTG 1 cut(s) 590
Msp20I TGGCCA 1 cut(s) 759
MspI CCGG 7 cut(s) 212, 404, 473, 507, 532, 668, 681
MspR9I CCNGG 7 cut(s) 212, 508, 532, 533, 668, 681, 824
MunI CAATTG 2 cut(s) 637, 739
Mva1269I GAATGC 1 cut(s) 797
MvaI CCWGG 1 cut(s) 824
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 2 cut(s) 660, 813
NciI CCSGG 6 cut(s) 212, 508, 532, 533, 668, 681
NdeII GATC 1 cut(s) 354
NlaIII CATG 1 cut(s) 781
NlaIV GGNNCC 1 cut(s) 216
NmuCI GTSAC 1 cut(s) 734
NruI TCGCGA 1 cut(s) 68
NspV TTCGAA 1 cut(s) 492
OliI CACNNNNGTG 1 cut(s) 590
PaeR7I CTCGAG 1 cut(s) 512
PcsI WCGNNNNNNNCGW 3 cut(s) 276, 288, 524
PctI GAATGC 1 cut(s) 797
PdmI GAANNNNTTC 1 cut(s) 797
PfeI GAWTC 6 cut(s) 70, 191, 221, 389, 494, 751
PfoI TCCNGGA 1 cut(s) 666
PkrI GCNGC 3 cut(s) 348, 806, 862
PleI GAGTC 2 cut(s) 245, 287
PmaCI CACGTG 1 cut(s) 588
PmlI CACGTG 1 cut(s) 588
PpsI GAGTC 2 cut(s) 245, 287
Ppu21I YACGTR 1 cut(s) 588
Psp124BI GAGCTC 2 cut(s) 573, 656
Psp6I CCWGG 1 cut(s) 822
PspCI CACGTG 1 cut(s) 588
PspGI CCWGG 1 cut(s) 822
PspN4I GGNNCC 1 cut(s) 216
PspPI GGNCC 3 cut(s) 166, 186, 605
PstI CTGCAG 1 cut(s) 806
PstNI CAGNNNCTG 1 cut(s) 732
PsuI RGATCY 1 cut(s) 354
RruI TCGCGA 1 cut(s) 68
RsaI GTAC 1 cut(s) 782
RsaNI GTAC 1 cut(s) 781
RseI CAYNNNNRTG 1 cut(s) 590
Rsr2I CGGWCCG 1 cut(s) 605
RsrII CGGWCCG 1 cut(s) 605
SacI GAGCTC 2 cut(s) 573, 656
SalI GTCGAC 1 cut(s) 278
SatI GCNGC 3 cut(s) 347, 805, 861
Sau3AI GATC 1 cut(s) 354
Sau96I GGNCC 3 cut(s) 166, 186, 605
SchI GAGTC 2 cut(s) 245, 287
ScrFI CCNGG 7 cut(s) 212, 508, 532, 533, 668, 681, 824
SduI GDGCHC 5 cut(s) 134, 219, 513, 573, 656
SfaNI GCATC 3 cut(s) 240, 270, 651
SfcI CTRYAG 1 cut(s) 802
Sfr274I CTCGAG 1 cut(s) 512
SfuI TTCGAA 1 cut(s) 492
SgrDI CGTCGACG 1 cut(s) 278
SinI GGWCC 2 cut(s) 186, 605
SlaI CTCGAG 1 cut(s) 512
SmaI CCCGGG 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 590
SmlI CTYRAG 2 cut(s) 350, 512
SmoI CTYRAG 2 cut(s) 350, 512
Sse9I AATT 5 cut(s) 245, 430, 523, 637, 739
SsiI CCGC 2 cut(s) 5, 848
SspMI CTAG 1 cut(s) 543
SstI GAGCTC 2 cut(s) 573, 656
StyD4I CCNGG 7 cut(s) 210, 506, 530, 531, 666, 679, 822
TaaI ACNGT 2 cut(s) 309, 605
TaiI ACGT 1 cut(s) 590
TaqI TCGA 7 cut(s) 98, 147, 194, 279, 492, 513, 527
TaqII GACCGA 2 cut(s) 94, 456
TasI AATT 5 cut(s) 245, 430, 523, 637, 739
TatI WGTACW 1 cut(s) 780
TfiI GAWTC 6 cut(s) 70, 191, 221, 389, 494, 751
TscAI CASTG 2 cut(s) 242, 565
TseFI GTSAC 1 cut(s) 734
TseI GCWGC 3 cut(s) 346, 804, 860
Tsp45I GTSAC 1 cut(s) 734
TspDTI ATGAA 2 cut(s) 536, 766
TspGWI ACGGA 2 cut(s) 440, 445
TspMI CCCGGG 1 cut(s) 531
TspRI CASTG 2 cut(s) 242, 565
VpaK11BI GGWCC 2 cut(s) 186, 605
XapI RAATTY 2 cut(s) 430, 523
XhoI CTCGAG 1 cut(s) 512
XmaI CCCGGG 1 cut(s) 531
XmiI GTMKAC 1 cut(s) 279
XmnI GAANNNNTTC 1 cut(s) 797
XspI CTAG 1 cut(s) 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.