pycom04g03200

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0009892
Physical Location & Seq
Forward (+)
2944242 .. 2944604
363 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g03200.1

Sequence Viewer

Length: 312 bp
ATGTTTCATCTTCAATCTTCATCATTTTCGGGTCACAGCTCAAGATCCAAATCCCTCCCCTCCAACCCTTTGTTTTCTCCCTTTCCAAATCACCAAAATCTCCGGCGGACTTCACAGCTCAAGATCCAAATCCCTCCCCTCCAACCCCCTGTTCTCTCCCCTTCCCAATCACCAAAATCGTCGACGGATTTTAGCACGAAGACGGAGAATTCTCATCTGGGTTCTTTTTCCTCTGTCTTATCTCAGTCGCTGGAGAAGAAATTGATGTTCGAATCCGCGTGCTCCGGGCTCGAGACGATGAATTCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

104

Amino Acids

11.3

Weight (kDa)

9.74

Isoelectric Point (pI)

91.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 182
AccII CGCG 1 cut(s) 278
AciI CCGC 2 cut(s) 106, 276
AclWI GGATC 2 cut(s) 39, 118
AcsI RAATTY 2 cut(s) 208, 301
AgsI TTSAA 2 cut(s) 14, 306
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 2 cut(s) 39, 118
AluI AGCT 2 cut(s) 39, 118
Alw21I GWGCWC 1 cut(s) 284
Alw26I GTCTC 1 cut(s) 287
AlwI GGATC 2 cut(s) 39, 118
AlwNI CAGNNNCTG 1 cut(s) 250
Ama87I CYCGRG 1 cut(s) 290
ApoI RAATTY 2 cut(s) 208, 301
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 83, 162
AsuII TTCGAA 1 cut(s) 270
AvaI CYCGRG 1 cut(s) 290
BanII GRGCYC 1 cut(s) 291
BbsI GAAGAC 1 cut(s) 206
Bbv12I GWGCWC 1 cut(s) 284
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 287
BfaI CTAG 1 cut(s) 310
Bme1390I CCNGG 1 cut(s) 286
BmeT110I CYCGRG 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 206
BpmI CTGGAG 1 cut(s) 272
Bpu14I TTCGAA 1 cut(s) 270
BpuEI CTTGAG 2 cut(s) 25, 104
BpuMI CCSGG 1 cut(s) 286
BsaBI GATNNNNATC 2 cut(s) 49, 128
Bse8I GATNNNNATC 2 cut(s) 49, 128
BseJI GATNNNNATC 2 cut(s) 49, 128
BseMII CTCAG 1 cut(s) 257
Bsh1236I CGCG 1 cut(s) 278
BsiHKAI GWGCWC 1 cut(s) 284
BsiHKCI CYCGRG 1 cut(s) 290
BsiSI CCGG 2 cut(s) 103, 285
BsmAI GTCTC 1 cut(s) 287
BsmBI CGTCTC 1 cut(s) 287
BsoBI CYCGRG 1 cut(s) 290
Bsp119I TTCGAA 1 cut(s) 270
Bsp1286I GDGCHC 2 cut(s) 284, 291
Bsp143I GATC 2 cut(s) 44, 123
BspACI CCGC 2 cut(s) 106, 276
BspCNI CTCAG 1 cut(s) 256
BspFNI CGCG 1 cut(s) 278
BspPI GGATC 2 cut(s) 39, 118
BspT104I TTCGAA 1 cut(s) 270
BssMI GATC 2 cut(s) 44, 123
BstBI TTCGAA 1 cut(s) 270
BstC8I GCNNGC 1 cut(s) 280
BstDEI CTNAG 1 cut(s) 243
BstFNI CGCG 1 cut(s) 278
BstKTI GATC 2 cut(s) 47, 126
BstMAI GTCTC 1 cut(s) 287
BstMBI GATC 2 cut(s) 44, 123
BstSCI CCNGG 1 cut(s) 284
BstUI CGCG 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 206
BstX2I RGATCY 2 cut(s) 44, 123
BstYI RGATCY 2 cut(s) 44, 123
Cac8I GCNNGC 1 cut(s) 280
CaiI CAGNNNCTG 1 cut(s) 250
CviJI RGCY 3 cut(s) 39, 118, 289
CviKI_1 RGCY 3 cut(s) 39, 118, 289
DdeI CTNAG 1 cut(s) 243
DpnI GATC 2 cut(s) 46, 125
DpnII GATC 2 cut(s) 44, 123
EciI GGCGGA 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 291
Eco88I CYCGRG 1 cut(s) 290
EcoRI GAATTC 2 cut(s) 208, 301
EcoT38I GRGCYC 1 cut(s) 291
Esp3I CGTCTC 1 cut(s) 287
FblI GTMKAC 1 cut(s) 182
FriOI GRGCYC 1 cut(s) 291
FspBI CTAG 1 cut(s) 310
GsuI CTGGAG 1 cut(s) 272
HapII CCGG 2 cut(s) 103, 285
HincII GTYRAC 1 cut(s) 183
HindII GTYRAC 1 cut(s) 183
HinfI GANTC 1 cut(s) 272
HpaII CCGG 2 cut(s) 103, 285
HphI GGTGA 2 cut(s) 83, 162
Hpy166II GTNNAC 1 cut(s) 183
Hpy188III TCNNGA 3 cut(s) 42, 121, 292
Hpy8I GTNNAC 1 cut(s) 183
Hpy99I CGWCG 2 cut(s) 184, 187
HpyAV CCTTC 1 cut(s) 171
HpyF3I CTNAG 1 cut(s) 243
Kzo9I GATC 2 cut(s) 44, 123
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 5 cut(s) 116, 162, 203, 236, 298
MaeI CTAG 1 cut(s) 310
MaeIII GTNAC 1 cut(s) 32
MalI GATC 2 cut(s) 46, 125
MboI GATC 2 cut(s) 44, 123
MboII GAAGA 3 cut(s) 9, 211, 268
MflI RGATCY 2 cut(s) 44, 123
MhlI GDGCHC 2 cut(s) 284, 291
MluCI AATT 3 cut(s) 208, 260, 301
MmeI TCCRAC 2 cut(s) 87, 166
MnlI CCTC 5 cut(s) 65, 70, 144, 149, 241
MspI CCGG 2 cut(s) 103, 285
MspR9I CCNGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 278
NciI CCSGG 1 cut(s) 286
NdeII GATC 2 cut(s) 44, 123
NmuCI GTSAC 1 cut(s) 32
NspV TTCGAA 1 cut(s) 270
PaeR7I CTCGAG 1 cut(s) 290
PfeI GAWTC 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 250
PsuI RGATCY 2 cut(s) 44, 123
SalI GTCGAC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 44, 123
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 2 cut(s) 284, 291
SetI ASST 3 cut(s) 41, 120, 311
Sfr274I CTCGAG 1 cut(s) 290
SfuI TTCGAA 1 cut(s) 270
SgrDI CGTCGACG 1 cut(s) 181
SlaI CTCGAG 1 cut(s) 290
SmlI CTYRAG 3 cut(s) 40, 119, 290
SmoI CTYRAG 3 cut(s) 40, 119, 290
Sse9I AATT 3 cut(s) 208, 260, 301
SsiI CCGC 2 cut(s) 106, 276
SspMI CTAG 1 cut(s) 310
StyD4I CCNGG 1 cut(s) 284
TaqI TCGA 3 cut(s) 182, 270, 291
TasI AATT 3 cut(s) 208, 260, 301
TfiI GAWTC 1 cut(s) 272
TseFI GTSAC 1 cut(s) 32
Tsp45I GTSAC 1 cut(s) 32
TspDTI ATGAA 1 cut(s) 9
TspGWI ACGGA 2 cut(s) 200, 218
XapI RAATTY 2 cut(s) 208, 301
XhoI CTCGAG 1 cut(s) 290
XmiI GTMKAC 1 cut(s) 182
XspI CTAG 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.