MD13G1195400.v1.1

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0009892
Physical Location & Seq
Reverse (-)
16936256 .. 16939252
2997 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1195400.v1.1.491

Sequence Viewer

Length: 1107 bp
ATGCACGTCTTGTCCTTAGAGATATGGAGGTCACAGAGTTGTGGCAGCAGAGAGAGAGAGAATCGTTTCATGGAATCGTTTCTGCAATTTCTGGTTTCTGGGTTTTTTCATCTCCCATTCTCTAACACCGCAGAGCTTAAAAGTCTGCAACTTTCTGCCATTTTCTACAGCTTCAAAGCTTGTGAGGGTTTTATTTTTATAGGATTTTTCAAGAACCAGAGCAAGCAAGCAAGCGAGCTCGCTCCAATGGCGGAAAACGGCTCTCTTCTCTCTCCCAGAGAAAAACACACAAAACTCACTTCCTCTTTCTTCGCGAATCCGAGATTGTTCACCAGCTTCACCTCAAAAGCCGTCTCTGAATCCGACGCCGTAATGAGCCCAACCTCCATCCTCGAAACGAAACCGTTTCTGGGCCTCCGAAACCCCTTCTGGTCCGAATCGAACACCCCCAGAACCCCGGAACCCGAATCCAGACGCATCCACTGGGACAAATTGGACTCCAAAGGCATCGGCCTCGCCATCGTCGACGCCCTCAACGAATCCGACCCGAAACCGTCAAATCCCAAAACTCGAATGGTGATTTTCGGGTCGCAGCTCAAGATCCAAATCCCTCCCCTGCAACCCTCTGTTCTCTCCCCTTCCCGATCACCGAAATCTTCGGCGGATTTCAGCACCAAGACGGAGAATTCCCATCTGGGTTCTTTCTCCTCCGTCTTGTCTCAGTCGCCGGAGAAGAAATCGCTGTTCGAATCCGAGACGATGAATTCGACCCGGGTTTTCACGAGCCGTCTCTCTGTCAGTGAAATGGAGCTCTCTGAGGATTACACGTGTGTGATTTCCCATGGGCCGAACCCGAAAACCACGCACATCTTCGACAATTGCATCGTGGAGAGCTCCGATGGCGTCCCGGAGTTTCCTCCCGGCAGGAAGTCAAACGGGTCAAGCTCTCTGTCTGAGAGTTTTCTCAGCTTCTGTGACAATTGCAACAAGAATCTTGGCCACGGCAAAGATATTTTTATGTACAGGGGTGAGAAGGCATTCTGCAGCCGTGAGTGCCGTTACCAGGAGATGTTGTTGGAGGAGGGAGTGGATAAACTGGAAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

369

Amino Acids

41.18

Weight (kDa)

6.48

Isoelectric Point (pI)

56.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 314 - 361 3.2e-21 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 525
AccII CGCG 1 cut(s) 314
AciI CCGC 3 cut(s) 129, 251, 662
AclWI GGATC 1 cut(s) 595
AcoI YGGCCR 1 cut(s) 997
AcsI RAATTY 2 cut(s) 685, 763
AcvI CACGTG 1 cut(s) 828
AcyI GRCGYC 3 cut(s) 366, 528, 903
AfaI GTAC 1 cut(s) 1022
AfiI CCNNNNNNNGG 2 cut(s) 410, 1063
AflIII ACRYGT 2 cut(s) 825, 827
AgsI TTSAA 2 cut(s) 175, 211
AjiI CACGTC 1 cut(s) 7
AjnI CCWGG 1 cut(s) 1062
AleI CACNNNNGTG 1 cut(s) 830
Alw21I GWGCWC 3 cut(s) 240, 813, 896
Alw26I GTCTC 4 cut(s) 358, 723, 749, 794
AlwI GGATC 1 cut(s) 595
AlwNI CAGNNNCTG 1 cut(s) 972
Ama87I CYCGRG 1 cut(s) 771
AoxI GGCC 4 cut(s) 412, 511, 845, 997
ApeKI GCWGC 3 cut(s) 45, 592, 1044
ApoI RAATTY 2 cut(s) 685, 763
ArsI GACNNNNNNTTYG 2 cut(s) 748, 780
Asp700I GAANNNNTTC 3 cut(s) 65, 78, 1037
AspS9I GGNCC 3 cut(s) 412, 432, 845
AsuC2I CCSGG 5 cut(s) 458, 772, 773, 908, 921
AsuHPI GGTGA 5 cut(s) 322, 331, 589, 639, 1040
AsuII TTCGAA 1 cut(s) 747
AvaI CYCGRG 1 cut(s) 771
AvaII GGWCC 1 cut(s) 432
BalI TGGCCA 1 cut(s) 999
BanII GRGCYC 4 cut(s) 240, 380, 813, 896
BauI CACGAG 1 cut(s) 781
BbrPI CACGTG 1 cut(s) 828
Bbv12I GWGCWC 3 cut(s) 240, 813, 896
BbvI GCAGC 3 cut(s) 57, 604, 1056
BccI CCATC 4 cut(s) 395, 527, 699, 893
BceAI ACGGC 7 cut(s) 274, 335, 353, 771, 1018, 1032, 1041
BcgI CGANNNNNNTGC 2 cut(s) 496, 530
BciT130I CCWGG 1 cut(s) 1064
BcnI CCSGG 5 cut(s) 458, 772, 773, 908, 921
BcoDI GTCTC 4 cut(s) 358, 723, 749, 794
BfmI CTRYAG 2 cut(s) 166, 1042
BisI GCNGC 3 cut(s) 46, 593, 1045
BlsI GCNGC 3 cut(s) 47, 594, 1046
Bme1390I CCNGG 6 cut(s) 458, 772, 773, 908, 921, 1064
Bme18I GGWCC 1 cut(s) 432
BmeT110I CYCGRG 1 cut(s) 771
BmgBI CACGTC 1 cut(s) 7
BmgT120I GGNCC 3 cut(s) 412, 432, 845
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 6 cut(s) 458, 772, 773, 908, 921, 1064
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 3 cut(s) 486, 516, 891
BmuI ACTGGG 1 cut(s) 493
Bpu14I TTCGAA 1 cut(s) 747
BpuEI CTTGAG 1 cut(s) 581
BpuMI CCSGG 5 cut(s) 458, 772, 773, 908, 921
BsaAI YACGTR 1 cut(s) 828
BsaBI GATNNNNATC 1 cut(s) 605
BsaHI GRCGYC 3 cut(s) 366, 528, 903
BsaJI CCNNGG 4 cut(s) 456, 771, 841, 1000
BsaXI ACNNNNNCTCC 2 cut(s) 1058, 1088
Bsc4I CCNNNNNNNGG 2 cut(s) 410, 1063
Bse1I ACTGG 2 cut(s) 488, 1101
Bse8I GATNNNNATC 1 cut(s) 605
BseBI CCWGG 1 cut(s) 1064
BseDI CCNNGG 4 cut(s) 456, 771, 841, 1000
BseGI GGATG 2 cut(s) 387, 477
BseJI GATNNNNATC 1 cut(s) 605
BseLI CCNNNNNNNGG 2 cut(s) 410, 1063
BseMII CTCAG 4 cut(s) 734, 807, 945, 979
BseNI ACTGG 2 cut(s) 488, 1101
BseRI GAGGAG 2 cut(s) 697, 1094
BseXI GCAGC 3 cut(s) 57, 604, 1056
Bsh1236I CGCG 1 cut(s) 314
BshFI GGCC 4 cut(s) 414, 513, 847, 999
BsiHKAI GWGCWC 3 cut(s) 240, 813, 896
BsiHKCI CYCGRG 1 cut(s) 771
BsiSI CCGG 5 cut(s) 458, 728, 772, 908, 921
BslFI GGGAC 2 cut(s) 500, 890
BslI CCNNNNNNNGG 2 cut(s) 410, 1063
BsmAI GTCTC 4 cut(s) 358, 723, 749, 794
BsmBI CGTCTC 3 cut(s) 358, 749, 794
BsmFI GGGAC 2 cut(s) 500, 890
BsmI GAATGC 1 cut(s) 1037
BsnI GGCC 4 cut(s) 414, 513, 847, 999
BsoBI CYCGRG 1 cut(s) 771
Bsp119I TTCGAA 1 cut(s) 747
Bsp1286I GDGCHC 4 cut(s) 240, 380, 813, 896
Bsp1407I TGTACA 1 cut(s) 1020
Bsp143I GATC 2 cut(s) 600, 644
Bsp19I CCATGG 1 cut(s) 841
Bsp68I TCGCGA 1 cut(s) 314
BspACI CCGC 3 cut(s) 129, 251, 662
BspANI GGCC 4 cut(s) 414, 513, 847, 999
BspCNI CTCAG 4 cut(s) 733, 808, 946, 978
BspFNI CGCG 1 cut(s) 314
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 1046
BspPI GGATC 1 cut(s) 595
BspT104I TTCGAA 1 cut(s) 747
BsrGI TGTACA 1 cut(s) 1020
BsrI ACTGG 2 cut(s) 488, 1101
BssECI CCNNGG 4 cut(s) 456, 771, 841, 1000
BssMI GATC 2 cut(s) 600, 644
BssNI GRCGYC 3 cut(s) 366, 528, 903
BssSI CACGAG 1 cut(s) 781
BssT1I CCWWGG 1 cut(s) 841
Bst2BI CACGAG 1 cut(s) 781
Bst2UI CCWGG 1 cut(s) 1064
Bst4CI ACNGT 2 cut(s) 405, 555
Bst6I CTCTTC 1 cut(s) 270
BstACI GRCGYC 3 cut(s) 366, 528, 903
BstAUI TGTACA 1 cut(s) 1020
BstBAI YACGTR 1 cut(s) 828
BstBI TTCGAA 1 cut(s) 747
BstC8I GCNNGC 5 cut(s) 224, 228, 232, 236, 240
BstDEI CTNAG 5 cut(s) 16, 720, 816, 954, 965
BstDSI CCRYGG 2 cut(s) 841, 1000
BstF5I GGATG 2 cut(s) 387, 477
BstFNI CGCG 1 cut(s) 314
BstKTI GATC 2 cut(s) 603, 647
BstMAI GTCTC 4 cut(s) 358, 723, 749, 794
BstMBI GATC 2 cut(s) 600, 644
BstMWI GCNNNNNNNGC 3 cut(s) 248, 900, 1053
BstNI CCWGG 1 cut(s) 1064
BstSCI CCNGG 6 cut(s) 456, 770, 771, 906, 919, 1062
BstSFI CTRYAG 2 cut(s) 166, 1042
BstUI CGCG 1 cut(s) 314
BstV1I GCAGC 3 cut(s) 57, 604, 1056
BstX2I RGATCY 1 cut(s) 600
BstYI RGATCY 1 cut(s) 600
BsuRI GGCC 4 cut(s) 414, 513, 847, 999
BtgI CCRYGG 2 cut(s) 841, 1000
BtrI CACGTC 1 cut(s) 7
BtsCI GGATG 2 cut(s) 387, 477
BtsIMutI CAGTG 2 cut(s) 481, 805
BtuMI TCGCGA 1 cut(s) 314
Cac8I GCNNGC 5 cut(s) 224, 228, 232, 236, 240
CaiI CAGNNNCTG 1 cut(s) 972
Cfr13I GGNCC 3 cut(s) 412, 432, 845
Cfr9I CCCGGG 1 cut(s) 771
CseI GACGC 4 cut(s) 374, 483, 536, 892
Csp6I GTAC 1 cut(s) 1021
CviAII CATG 2 cut(s) 70, 842
CviQI GTAC 1 cut(s) 1021
DdeI CTNAG 5 cut(s) 16, 720, 816, 954, 965
DpnI GATC 2 cut(s) 602, 646
DpnII GATC 2 cut(s) 600, 644
EaeI YGGCCR 1 cut(s) 997
Eam1104I CTCTTC 1 cut(s) 270
EarI CTCTTC 1 cut(s) 270
EciI GGCGGA 2 cut(s) 266, 677
Ecl136II GAGCTC 3 cut(s) 238, 811, 894
Eco130I CCWWGG 1 cut(s) 841
Eco24I GRGCYC 4 cut(s) 240, 380, 813, 896
Eco47I GGWCC 1 cut(s) 432
Eco53kI GAGCTC 3 cut(s) 238, 811, 894
Eco72I CACGTG 1 cut(s) 828
Eco88I CYCGRG 1 cut(s) 771
EcoICRI GAGCTC 3 cut(s) 238, 811, 894
EcoRI GAATTC 2 cut(s) 685, 763
EcoRII CCWGG 1 cut(s) 1062
EcoT14I CCWWGG 1 cut(s) 841
EcoT38I GRGCYC 4 cut(s) 240, 380, 813, 896
ErhI CCWWGG 1 cut(s) 841
Esp3I CGTCTC 3 cut(s) 358, 749, 794
FaeI CATG 2 cut(s) 73, 845
FaiI YATR 5 cut(s) 25, 71, 200, 843, 1019
FaqI GGGAC 2 cut(s) 500, 890
FatI CATG 2 cut(s) 69, 841
FblI GTMKAC 1 cut(s) 525
Fnu4HI GCNGC 3 cut(s) 46, 593, 1045
FokI GGATG 2 cut(s) 374, 464
FriOI GRGCYC 4 cut(s) 240, 380, 813, 896
Fsp4HI GCNGC 3 cut(s) 46, 593, 1045
GluI GCNGC 3 cut(s) 46, 593, 1045
HaeIII GGCC 4 cut(s) 414, 513, 847, 999
HapII CCGG 5 cut(s) 458, 728, 772, 908, 921
HgaI GACGC 4 cut(s) 374, 483, 536, 892
Hin1I GRCGYC 3 cut(s) 366, 528, 903
Hin1II CATG 2 cut(s) 73, 845
HincII GTYRAC 1 cut(s) 526
HindII GTYRAC 1 cut(s) 526
HindIII AAGCTT 2 cut(s) 177, 1101
HpaII CCGG 5 cut(s) 458, 728, 772, 908, 921
HphI GGTGA 5 cut(s) 322, 331, 589, 639, 1040
Hpy166II GTNNAC 2 cut(s) 330, 526
Hpy188III TCNNGA 6 cut(s) 211, 313, 471, 598, 642, 781
Hpy8I GTNNAC 2 cut(s) 330, 526
Hpy99I CGWCG 3 cut(s) 368, 527, 530
HpyAV CCTTC 3 cut(s) 436, 648, 1027
HpyCH4III ACNGT 2 cut(s) 405, 555
HpyCH4IV ACGT 2 cut(s) 6, 827
HpyCH4V TGCA 7 cut(s) 4, 85, 148, 619, 882, 984, 1044
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 900, 1053
HpyF3I CTNAG 5 cut(s) 16, 720, 816, 954, 965
HpySE526I ACGT 2 cut(s) 6, 827
Hsp92I GRCGYC 3 cut(s) 366, 528, 903
Hsp92II CATG 2 cut(s) 73, 845
Kzo9I GATC 2 cut(s) 600, 644
LmnI GCTCC 3 cut(s) 247, 808, 899
Lsp1109I GCAGC 3 cut(s) 57, 604, 1056
LweI GCATC 3 cut(s) 486, 516, 891
MaeII ACGT 2 cut(s) 6, 827
MaeIII GTNAC 3 cut(s) 30, 974, 1058
MalI GATC 2 cut(s) 602, 646
MboI GATC 2 cut(s) 600, 644
MboII GAAGA 5 cut(s) 257, 301, 648, 745, 862
MfeI CAATTG 2 cut(s) 877, 979
MflI RGATCY 1 cut(s) 600
MhlI GDGCHC 4 cut(s) 240, 380, 813, 896
MlsI TGGCCA 1 cut(s) 999
MluCI AATT 6 cut(s) 86, 491, 685, 763, 877, 979
MluNI TGGCCA 1 cut(s) 999
MlyI GAGTC 1 cut(s) 491
MmeI TCCRAC 3 cut(s) 387, 567, 1056
Mox20I TGGCCA 1 cut(s) 999
MroXI GAANNNNTTC 3 cut(s) 65, 78, 1037
MscI TGGCCA 1 cut(s) 999
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 830
Msp20I TGGCCA 1 cut(s) 999
MspI CCGG 5 cut(s) 458, 728, 772, 908, 921
MspR9I CCNGG 6 cut(s) 458, 772, 773, 908, 921, 1064
MunI CAATTG 2 cut(s) 877, 979
Mva1269I GAATGC 1 cut(s) 1037
MvaI CCWGG 1 cut(s) 1064
MvnI CGCG 1 cut(s) 314
MwoI GCNNNNNNNGC 3 cut(s) 248, 900, 1053
NciI CCSGG 5 cut(s) 458, 772, 773, 908, 921
NcoI CCATGG 1 cut(s) 841
NdeII GATC 2 cut(s) 600, 644
NlaIII CATG 2 cut(s) 73, 845
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 2 cut(s) 30, 974
NruI TCGCGA 1 cut(s) 314
NspV TTCGAA 1 cut(s) 747
OliI CACNNNNGTG 1 cut(s) 830
PcsI WCGNNNNNNNCGW 3 cut(s) 522, 534, 764
PctI GAATGC 1 cut(s) 1037
PdmI GAANNNNTTC 3 cut(s) 65, 78, 1037
PfeI GAWTC 9 cut(s) 61, 74, 316, 359, 437, 467, 539, 749, 991
PfoI TCCNGGA 1 cut(s) 906
PkrI GCNGC 3 cut(s) 47, 594, 1046
PleI GAGTC 1 cut(s) 491
PmaCI CACGTG 1 cut(s) 828
PmlI CACGTG 1 cut(s) 828
PpsI GAGTC 1 cut(s) 491
Ppu21I YACGTR 1 cut(s) 828
Psp124BI GAGCTC 3 cut(s) 240, 813, 896
Psp6I CCWGG 1 cut(s) 1062
PspCI CACGTG 1 cut(s) 828
PspGI CCWGG 1 cut(s) 1062
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 3 cut(s) 412, 432, 845
PstI CTGCAG 1 cut(s) 1046
PstNI CAGNNNCTG 1 cut(s) 972
PsuI RGATCY 1 cut(s) 600
RruI TCGCGA 1 cut(s) 314
RsaI GTAC 1 cut(s) 1022
RsaNI GTAC 1 cut(s) 1021
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 3 cut(s) 240, 813, 896
SalI GTCGAC 1 cut(s) 524
SaqAI TTAA 1 cut(s) 138
SatI GCNGC 3 cut(s) 46, 593, 1045
Sau3AI GATC 2 cut(s) 600, 644
Sau96I GGNCC 3 cut(s) 412, 432, 845
SchI GAGTC 1 cut(s) 491
ScrFI CCNGG 6 cut(s) 458, 772, 773, 908, 921, 1064
SduI GDGCHC 4 cut(s) 240, 380, 813, 896
SfaNI GCATC 3 cut(s) 486, 516, 891
SfcI CTRYAG 2 cut(s) 166, 1042
SfuI TTCGAA 1 cut(s) 747
SgrDI CGTCGACG 1 cut(s) 524
SinI GGWCC 1 cut(s) 432
SmaI CCCGGG 1 cut(s) 773
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 596
SmoI CTYRAG 1 cut(s) 596
Sse9I AATT 6 cut(s) 86, 491, 685, 763, 877, 979
SsiI CCGC 3 cut(s) 129, 251, 662
SstI GAGCTC 3 cut(s) 240, 813, 896
StyD4I CCNGG 6 cut(s) 456, 770, 771, 906, 919, 1062
StyI CCWWGG 1 cut(s) 841
TaaI ACNGT 2 cut(s) 405, 555
TaiI ACGT 2 cut(s) 9, 830
TaqI TCGA 7 cut(s) 393, 440, 525, 571, 747, 767, 873
TasI AATT 6 cut(s) 86, 491, 685, 763, 877, 979
TatI WGTACW 1 cut(s) 1020
TfiI GAWTC 9 cut(s) 61, 74, 316, 359, 437, 467, 539, 749, 991
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
TscAI CASTG 2 cut(s) 488, 805
TseFI GTSAC 2 cut(s) 30, 974
TseI GCWGC 3 cut(s) 45, 592, 1044
Tsp45I GTSAC 2 cut(s) 30, 974
TspDTI ATGAA 3 cut(s) 58, 98, 776
TspGWI ACGGA 2 cut(s) 695, 700
TspMI CCCGGG 1 cut(s) 771
TspRI CASTG 2 cut(s) 488, 805
VpaK11BI GGWCC 1 cut(s) 432
XapI RAATTY 2 cut(s) 685, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 571
XmaI CCCGGG 1 cut(s) 771
XmiI GTMKAC 1 cut(s) 525
XmnI GAANNNNTTC 3 cut(s) 65, 78, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.