Rroxscaffold_5G00359640

zinc-finger of the FCS-type, C2-C2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0009892
Physical Location & Seq
Forward (+)
39782035 .. 39784784
2750 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00359640.1

Sequence Viewer

Length: 861 bp
ATGGCGGACAGTAACTCTCTGCCTTCTCCTAGACCCGTTTCATCTTTCTTCTCCACTCCGAGATTGTTCACTAGCTTCACCTCAAATTCAAAACCCTTCTCTGAAACTGAAGCTGTTATGAGCCCAACTTCCATTCTGGAAACTAAGCCATTCTTTGGTCTAAGAAACCCATTCTGGTCCGAATCAAATACACCCAAAACCCCAGAACCCGAGACCAAACGCCACTGGGACAAATTGGACTCCAAAGGCATTGGACTTGCCATTGTTGATGCTCTAATTGACGATGATGGCTCTGATCCAAAACCATCAAAGCCCCAAAGCCGAATGGTTATTTTCGGTTCACAGCTCAAGATTCAAATCCCTCCTCTGCCATCCTCTGTTCTTCCCTCTTCTGAATCACCAAAACTTGAAGCCGTTTTCGGAATCGAAAGAACGAATTCTCCTTTGGGTCCTTTCTCTTCCGGCCTGTCTCAATCTCCGGCTAAGAAATCCCCATTTGGGACTGTCAGTTCCGGCATTGAGACTCCTGTCTCGCCTCACGTTTTCAAAGGGTGTCTCTCTGTTAGTGAAATGGAGCTTTCTGAGGATTATACTTGTGTGATTTCTCATGGGCCAAATCCAAGAACTACTCATATCTTTGACAACTGCGTTGTGGAGAGCTGTGATGGTGTGCCTGAACTTTCCCCAATCCGGAAGGAAAACGTGTCAAGTTACCCGTCTGAGAGTTTCCTCAGCTTCTGCTACCATTGCAAGAAGAATCTTGGGCAGGGCAAAGATATTTACATGTACAGAGGTGAGAAGGCGTTCTGCAGCAGTCAATGCCGTTATCAGGAGATGATGTTGGAGGAAGAAGGAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-FLZ

Protein Analysis

286

Amino Acids

31.41

Weight (kDa)

5.49

Isoelectric Point (pI)

66.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-FLZ PF04570 235 - 284 1.9e-22 zinc-finger of the FCS-type, C2-C2
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 155
AccIII TCCGGA 1 cut(s) 690
AciI CCGC 1 cut(s) 5
AclWI GGATC 1 cut(s) 290
AcsI RAATTY 2 cut(s) 85, 436
AcuI CTGAAG 1 cut(s) 129
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 4 cut(s) 155, 498, 690, 829
AflIII ACRYGT 2 cut(s) 702, 783
AgsI TTSAA 4 cut(s) 90, 356, 410, 547
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AloI GAACNNNNNNTCC 4 cut(s) 424, 456, 493, 525
AluBI AGCT 7 cut(s) 75, 113, 346, 577, 660, 735, 858
AluI AGCT 7 cut(s) 75, 113, 346, 577, 660, 735, 858
Alw26I GTCTC 5 cut(s) 206, 474, 515, 535, 560
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 738
Ama87I CYCGRG 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 690
AoxI GGCC 2 cut(s) 463, 611
ApeKI GCWGC 1 cut(s) 810
ApoI RAATTY 2 cut(s) 85, 436
Asp700I GAANNNNTTC 2 cut(s) 436, 803
AspS9I GGNCC 3 cut(s) 177, 449, 611
AsuHPI GGTGA 3 cut(s) 70, 390, 806
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 177, 449
BanII GRGCYC 1 cut(s) 125
BbvCI CCTCAGC 1 cut(s) 731
BbvI GCAGC 1 cut(s) 822
BccI CCATC 4 cut(s) 281, 313, 379, 659
BceAI ACGGC 2 cut(s) 398, 807
BcoDI GTCTC 5 cut(s) 206, 474, 515, 535, 560
BfaI CTAG 2 cut(s) 30, 72
BfmI CTRYAG 1 cut(s) 808
BisI GCNGC 1 cut(s) 811
BlsI GCNGC 1 cut(s) 812
Bme18I GGWCC 2 cut(s) 177, 449
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 177, 449, 611
BmiI GGNNCC 1 cut(s) 450
BmrI ACTGGG 1 cut(s) 235
BmsI GCATC 1 cut(s) 259
BmuI ACTGGG 1 cut(s) 235
BoxI GACNNNNGTC 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 731
BpuEI CTTGAG 1 cut(s) 332
BsaBI GATNNNNATC 1 cut(s) 356
BsaI GGTCTC 1 cut(s) 206
BsaWI WCCGGW 1 cut(s) 690
BsaXI ACNNNNNCTCC 4 cut(s) 424, 454, 824, 854
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 498, 690, 829
Bse1I ACTGG 1 cut(s) 230
Bse3DI GCAATG 1 cut(s) 745
Bse8I GATNNNNATC 1 cut(s) 356
BseAI TCCGGA 1 cut(s) 690
BseGI GGATG 1 cut(s) 371
BseJI GATNNNNATC 1 cut(s) 356
BseLI CCNNNNNNNGG 4 cut(s) 155, 498, 690, 829
BseMI GCAATG 1 cut(s) 745
BseMII CTCAG 3 cut(s) 573, 711, 745
BseNI ACTGG 1 cut(s) 230
BseRI GAGGAG 1 cut(s) 354
BseXI GCAGC 1 cut(s) 822
BshFI GGCC 2 cut(s) 465, 613
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 4 cut(s) 462, 479, 513, 691
BslFI GGGAC 2 cut(s) 242, 514
BslI CCNNNNNNNGG 4 cut(s) 155, 498, 690, 829
BsmAI GTCTC 5 cut(s) 206, 474, 515, 535, 560
BsmFI GGGAC 2 cut(s) 242, 514
BsnI GGCC 2 cut(s) 465, 613
Bso31I GGTCTC 1 cut(s) 206
BsoBI CYCGRG 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 125
Bsp13I TCCGGA 1 cut(s) 690
Bsp1407I TGTACA 1 cut(s) 786
Bsp143I GATC 1 cut(s) 295
BspACI CCGC 1 cut(s) 5
BspANI GGCC 2 cut(s) 465, 613
BspCNI CTCAG 3 cut(s) 574, 712, 744
BspEI TCCGGA 1 cut(s) 690
BspLI GGNNCC 1 cut(s) 450
BspMAI CTGCAG 1 cut(s) 812
BspPI GGATC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 206
BsrDI GCAATG 1 cut(s) 745
BsrGI TGTACA 1 cut(s) 786
BsrI ACTGG 1 cut(s) 230
BssMI GATC 1 cut(s) 295
Bst4CI ACNGT 2 cut(s) 11, 505
Bst6I CTCTTC 2 cut(s) 394, 463
BstAPI GCANNNNNTGC 1 cut(s) 819
BstAUI TGTACA 1 cut(s) 786
BstDEI CTNAG 6 cut(s) 144, 161, 483, 582, 720, 731
BstF5I GGATG 1 cut(s) 371
BstKTI GATC 1 cut(s) 298
BstMAI GTCTC 5 cut(s) 206, 474, 515, 535, 560
BstMBI GATC 1 cut(s) 295
BstMWI GCNNNNNNNGC 2 cut(s) 747, 819
BstNSI RCATGY 1 cut(s) 787
BstPAI GACNNNNGTC 1 cut(s) 527
BstSFI CTRYAG 1 cut(s) 808
BstV1I GCAGC 1 cut(s) 822
BsuRI GGCC 2 cut(s) 465, 613
BtsCI GGATG 1 cut(s) 371
BtsIMutI CAGTG 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 738
Cfr13I GGNCC 3 cut(s) 177, 449, 611
Csp6I GTAC 1 cut(s) 787
CviAII CATG 2 cut(s) 608, 784
CviQI GTAC 1 cut(s) 787
DdeI CTNAG 6 cut(s) 144, 161, 483, 582, 720, 731
DpnI GATC 1 cut(s) 297
DpnII GATC 1 cut(s) 295
Eam1104I CTCTTC 2 cut(s) 394, 463
EarI CTCTTC 2 cut(s) 394, 463
EciI GGCGGA 1 cut(s) 20
Eco24I GRGCYC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 206
Eco47I GGWCC 2 cut(s) 177, 449
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 449
EcoRI GAATTC 1 cut(s) 436
EcoT38I GRGCYC 1 cut(s) 125
FaeI CATG 2 cut(s) 611, 787
FaiI YATR 5 cut(s) 119, 591, 609, 633, 785
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 2 cut(s) 242, 514
FatI CATG 2 cut(s) 607, 783
Fnu4HI GCNGC 1 cut(s) 811
FokI GGATG 1 cut(s) 358
FriOI GRGCYC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 811
FspBI CTAG 2 cut(s) 30, 72
GluI GCNGC 1 cut(s) 811
HaeIII GGCC 2 cut(s) 465, 613
HapII CCGG 4 cut(s) 462, 479, 513, 691
Hin1II CATG 2 cut(s) 611, 787
HinfI GANTC 7 cut(s) 182, 239, 352, 395, 423, 523, 757
HpaII CCGG 4 cut(s) 462, 479, 513, 691
HphI GGTGA 3 cut(s) 70, 390, 806
Hpy166II GTNNAC 2 cut(s) 69, 341
Hpy188I TCNGA 8 cut(s) 60, 103, 181, 295, 394, 422, 583, 721
Hpy188III TCNNGA 4 cut(s) 137, 349, 691, 830
Hpy8I GTNNAC 2 cut(s) 69, 341
HpyAV CCTTC 5 cut(s) 33, 106, 688, 793, 845
HpyCH4III ACNGT 2 cut(s) 11, 505
HpyCH4IV ACGT 2 cut(s) 540, 702
HpyCH4V TGCA 2 cut(s) 750, 810
HpyF10VI GCNNNNNNNGC 2 cut(s) 747, 819
HpyF3I CTNAG 6 cut(s) 144, 161, 483, 582, 720, 731
HpySE526I ACGT 2 cut(s) 540, 702
Hsp92II CATG 2 cut(s) 611, 787
Kpn2I TCCGGA 1 cut(s) 690
Kzo9I GATC 1 cut(s) 295
LmnI GCTCC 1 cut(s) 574
Lsp1109I GCAGC 1 cut(s) 822
LweI GCATC 1 cut(s) 259
MaeI CTAG 2 cut(s) 30, 72
MaeII ACGT 2 cut(s) 540, 702
MaeIII GTNAC 2 cut(s) 11, 710
MalI GATC 1 cut(s) 297
MboI GATC 1 cut(s) 295
MboII GAAGA 6 cut(s) 40, 374, 381, 450, 766, 860
MhlI GDGCHC 1 cut(s) 125
MluCI AATT 4 cut(s) 85, 233, 276, 436
MlyI GAGTC 2 cut(s) 233, 517
MmeI TCCRAC 1 cut(s) 822
MroI TCCGGA 1 cut(s) 690
MroXI GAANNNNTTC 2 cut(s) 436, 803
MspI CCGG 4 cut(s) 462, 479, 513, 691
MwoI GCNNNNNNNGC 2 cut(s) 747, 819
NdeII GATC 1 cut(s) 295
NlaIII CATG 2 cut(s) 611, 787
NlaIV GGNNCC 1 cut(s) 450
NspI RCATGY 1 cut(s) 787
PciI ACATGT 1 cut(s) 783
PdmI GAANNNNTTC 2 cut(s) 436, 803
PfeI GAWTC 5 cut(s) 182, 352, 395, 423, 757
PflMI CCANNNNNTGG 1 cut(s) 155
PkrI GCNGC 1 cut(s) 812
PleI GAGTC 2 cut(s) 233, 517
PpsI GAGTC 2 cut(s) 233, 517
PpuMI RGGWCCY 1 cut(s) 449
PscI ACATGT 1 cut(s) 783
PshAI GACNNNNGTC 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 449
PspN4I GGNNCC 1 cut(s) 450
PspPI GGNCC 3 cut(s) 177, 449, 611
PspPPI RGGWCCY 1 cut(s) 449
PstI CTGCAG 1 cut(s) 812
PstNI CAGNNNCTG 1 cut(s) 738
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
SatI GCNGC 1 cut(s) 811
Sau3AI GATC 1 cut(s) 295
Sau96I GGNCC 3 cut(s) 177, 449, 611
SchI GAGTC 2 cut(s) 233, 517
SduI GDGCHC 1 cut(s) 125
SfaNI GCATC 1 cut(s) 259
SfcI CTRYAG 1 cut(s) 808
SinI GGWCC 2 cut(s) 177, 449
SmlI CTYRAG 1 cut(s) 347
SmoI CTYRAG 1 cut(s) 347
Sse9I AATT 4 cut(s) 85, 233, 276, 436
SsiI CCGC 1 cut(s) 5
SspMI CTAG 2 cut(s) 30, 72
TaaI ACNGT 2 cut(s) 11, 505
TaiI ACGT 2 cut(s) 543, 705
TaqI TCGA 1 cut(s) 426
TasI AATT 4 cut(s) 85, 233, 276, 436
TatI WGTACW 1 cut(s) 786
TfiI GAWTC 5 cut(s) 182, 352, 395, 423, 757
TscAI CASTG 1 cut(s) 230
TseI GCWGC 1 cut(s) 810
TspDTI ATGAA 1 cut(s) 30
TspRI CASTG 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 155
VpaK11BI GGWCC 2 cut(s) 177, 449
XapI RAATTY 2 cut(s) 85, 436
XceI RCATGY 1 cut(s) 787
XmnI GAANNNNTTC 2 cut(s) 436, 803
XspI CTAG 2 cut(s) 30, 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.