Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0010557

Physical Location & Seq

Genomic Coordinates Reverse (-)

20365064 .. 20366919

Gene Structure 1856 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g16400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGCAGATAGATACGTACACGACAGAGAACTTGCAAGGCACGGGATATACCAAAGGGAGAAATTCATAAAAGCAGACTTCCCAACTCACTGCAGTTATGGACCAGTAAGCCTTGAAGACCCATGCAAATGGCAAGGTGTTATTATGGGGCCTCCAGGTTCTCCTTATGAAGATGGTATCTTCTTTCTTTCCATTGATTTACCTGACGACTATCCAACAAGGCCTCCCATCATCAAATTCCTAACCAAGGTTTATCATCCAAACATTGATGAAAATGGCAATATTTACATTGACATTTTAGAAGAAGATCAATGGAACCCAATCCAAACCATTGAGAGCCTATTGCTCTCCATATGCTCACTTCTTGACGATCCAAATCCAGTGGACCCTCTCAATCCAAGCAGCAATCTCTTCAAAACAAACAAACAGGAATTCAACAAAATGGCGAGAAAATGGACTAAGAACTATGCTAGTGATTTGTACATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

HeLo UQ_con

Protein Analysis

163

Amino Acids

18.78

Weight (kDa)

4.89

Isoelectric Point (pI)

39.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	25 - 152	1.8e-42	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0010557)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16400 FvH4_4g16400 FvH4_4g16400
malus_domestica	MD04G1008900.v1.1
prunus_persica	Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1
pyrus_communis	pycom04g00690
rosa_laevigata	RLG00000008086
rosa_multiflora	Rmu_sc0001421.1_g000010
rosa_roxburghii	Rroxscaffold_5G00359060
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193300 Rh4BG191700 Rh4CG204400 Rh4DG191200
rosa_wichuraiana	Rw4G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	365
AcsI	RAATTY	3 cut(s)	62, 236, 431
AfaI	GTAC	2 cut(s)	18, 482
AfiI	CCNNNNNNNGG	1 cut(s)	247
AgsI	TTSAA	3 cut(s)	116, 415, 436
AjnI	CCWGG	1 cut(s)	154
AlwI	GGATC	1 cut(s)	365
AoxI	GGCC	2 cut(s)	149, 221
ApeKI	GCWGC	1 cut(s)	402
ApoI	RAATTY	3 cut(s)	62, 236, 431
AspS9I	GGNCC	3 cut(s)	101, 149, 385
AvaII	GGWCC	2 cut(s)	101, 385
BbsI	GAAGAC	1 cut(s)	123
BbvI	GCAGC	1 cut(s)	414
BccI	CCATC	2 cut(s)	167, 236
BciT130I	CCWGG	1 cut(s)	156
BfaI	CTAG	1 cut(s)	471
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	403
BlsI	GCNGC	1 cut(s)	404
Bme1390I	CCNGG	1 cut(s)	156
Bme18I	GGWCC	2 cut(s)	101, 385
BmgT120I	GGNCC	3 cut(s)	101, 149, 385
BmiI	GGNNCC	3 cut(s)	150, 317, 387
BmrFI	CCNGG	1 cut(s)	156
BpiI	GAAGAC	1 cut(s)	123
BpmI	CTGGAG	1 cut(s)	138
BsaAI	YACGTR	1 cut(s)	16
BsaBI	GATNNNNATC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	246
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse1I	ACTGG	2 cut(s)	104, 380
Bse8I	GATNNNNATC	1 cut(s)	375
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	256
BseJI	GATNNNNATC	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseNI	ACTGG	2 cut(s)	104, 380
BseXI	GCAGC	1 cut(s)	414
BshFI	GGCC	2 cut(s)	151, 223
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	2 cut(s)	151, 223
Bsp1407I	TGTACA	1 cut(s)	480
Bsp143I	GATC	2 cut(s)	307, 370
BspANI	GGCC	2 cut(s)	151, 223
BspLI	GGNNCC	3 cut(s)	150, 317, 387
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	1 cut(s)	365
BsrGI	TGTACA	1 cut(s)	480
BsrI	ACTGG	2 cut(s)	104, 380
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	2 cut(s)	307, 370
BssT1I	CCWWGG	1 cut(s)	246
Bst2UI	CCWGG	1 cut(s)	156
Bst6I	CTCTTC	1 cut(s)	416
BstAUI	TGTACA	1 cut(s)	480
BstBAI	YACGTR	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	459
BstENI	CCTNNNNNAGG	1 cut(s)	245
BstF5I	GGATG	1 cut(s)	256
BstKTI	GATC	2 cut(s)	310, 373
BstMBI	GATC	2 cut(s)	307, 370
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	91
BstSNI	TACGTA	1 cut(s)	16
BstV1I	GCAGC	1 cut(s)	414
BstV2I	GAAGAC	1 cut(s)	123
BstXI	CCANNNNNNTGG	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	151, 223
BtsCI	GGATG	1 cut(s)	256
BtsI	GCAGTG	1 cut(s)	88
BtsIMutI	CAGTG	2 cut(s)	88, 387
Cfr13I	GGNCC	3 cut(s)	101, 149, 385
Csp6I	GTAC	2 cut(s)	17, 481
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	1 cut(s)	123
CviJI	RGCY	4 cut(s)	111, 151, 223, 339
CviKI_1	RGCY	4 cut(s)	111, 151, 223, 339
CviQI	GTAC	2 cut(s)	17, 481
DdeI	CTNAG	1 cut(s)	459
DpnI	GATC	2 cut(s)	309, 372
DpnII	GATC	2 cut(s)	307, 370
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
Eco105I	TACGTA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	246
Eco147I	AGGCCT	1 cut(s)	223
Eco47I	GGWCC	2 cut(s)	101, 385
EcoNI	CCTNNNNNAGG	1 cut(s)	245
EcoO109I	RGGNCCY	1 cut(s)	149
EcoRI	GAATTC	1 cut(s)	431
EcoRII	CCWGG	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	246
ErhI	CCWWGG	1 cut(s)	246
FaeI	CATG	1 cut(s)	126
FatI	CATG	1 cut(s)	122
FauNDI	CATATG	2 cut(s)	353, 485
Fnu4HI	GCNGC	1 cut(s)	403
FokI	GGATG	1 cut(s)	243
Fsp4HI	GCNGC	1 cut(s)	403
FspBI	CTAG	1 cut(s)	471
GluI	GCNGC	1 cut(s)	403
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	151, 223
Hin1II	CATG	1 cut(s)	126
Hpy166II	GTNNAC	2 cut(s)	19, 385
Hpy188III	TCNNGA	1 cut(s)	365
Hpy8I	GTNNAC	2 cut(s)	19, 385
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	35, 93, 126
HpyF3I	CTNAG	1 cut(s)	459
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	126
Kzo9I	GATC	2 cut(s)	307, 370
LpnPI	CCDG	6 cut(s)	117, 141, 168, 216, 393, 413
Lsp1109I	GCAGC	1 cut(s)	414
MaeI	CTAG	1 cut(s)	471
MaeII	ACGT	1 cut(s)	15
MalI	GATC	2 cut(s)	309, 372
MboI	GATC	2 cut(s)	307, 370
MboII	GAAGA	6 cut(s)	128, 172, 182, 314, 317, 403
MluCI	AATT	3 cut(s)	62, 236, 431
MmeI	TCCRAC	1 cut(s)	239
MnlI	CCTC	3 cut(s)	162, 234, 399
MslI	CAYNNNNRTG	1 cut(s)	127
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
NdeI	CATATG	2 cut(s)	353, 485
NdeII	GATC	2 cut(s)	307, 370
NlaIII	CATG	1 cut(s)	126
NlaIV	GGNNCC	3 cut(s)	150, 317, 387
PceI	AGGCCT	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	404
Ppu21I	YACGTR	1 cut(s)	16
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PspN4I	GGNNCC	3 cut(s)	150, 317, 387
PspPI	GGNCC	3 cut(s)	101, 149, 385
PstI	CTGCAG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	18, 482
RsaNI	GTAC	2 cut(s)	17, 481
RseI	CAYNNNNRTG	1 cut(s)	127
SatI	GCNGC	1 cut(s)	403
Sau3AI	GATC	2 cut(s)	307, 370
Sau96I	GGNCC	3 cut(s)	101, 149, 385
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	5 cut(s)	18, 139, 160, 205, 252
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	2 cut(s)	101, 385
SmiMI	CAYNNNNRTG	1 cut(s)	127
SnaBI	TACGTA	1 cut(s)	16
Sse9I	AATT	3 cut(s)	62, 236, 431
SseBI	AGGCCT	1 cut(s)	223
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	1 cut(s)	471
StuI	AGGCCT	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	154
StyI	CCWWGG	1 cut(s)	246
TaiI	ACGT	1 cut(s)	18
TasI	AATT	3 cut(s)	62, 236, 431
TatI	WGTACW	1 cut(s)	480
TscAI	CASTG	2 cut(s)	95, 387
TseI	GCWGC	1 cut(s)	402
TspDTI	ATGAA	3 cut(s)	55, 183, 285
TspRI	CASTG	2 cut(s)	95, 387
VpaK11BI	GGWCC	2 cut(s)	101, 385
XagI	CCTNNNNNAGG	1 cut(s)	245
XapI	RAATTY	3 cut(s)	62, 236, 431
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.