Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010557

Physical Location & Seq

Genomic Coordinates Reverse (-)

1017968 .. 1020969

Gene Structure 3002 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1008900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCAGACTGGTCTTTCGACAGGAAACCTAAAAAGCACTGGATGTACGAAAGAGAAGGGTTGAGGAAAGTAGACTTCCCGAGTCACTGCAGTTATGGACCAGTGAATGAAGATGACCCTTACAAATGGCAAGGTATGATCATGGGGCCACCAGATTCTCCTTATGAGCAAGGTGTCTTCTTTCTCTCCATTGATTTGCCACCACAATATCCTAACAAACCTCCCACCATCAAATTCCTAACCAAGGTTTATCATCCAAATATTAACGGCGAGGACGGGACTATTTACGTCGACATTTTAGAAGAGGATAAATGGAATCCAGTGCAGAACATTGAGAGCCTCCTGCTCTCCATATGCTCACTTCTCGATGATCCAAACCCAGTGGATCCCCTCAATCCACCCTGCCTGCTCTTCCGGAAAGACAAAAAGAAGTTTGTCGAAACGGCCAAGGAGTGGACTAGGAAGTATGCAATGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04013 ko04120 ko04141 ko04624 map04013 map04120 map04141 map04624

Pfam Domains

Protein Families

HeLo UQ_con

Protein Analysis

160

Amino Acids

18.67

Weight (kDa)

5.39

Isoelectric Point (pI)

41.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	27 - 152	1e-41	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010557)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g16400 FvH4_4g16400 FvH4_4g16400
malus_domestica	MD04G1008900.v1.1
prunus_persica	Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1 Prupe.1G008300_v2.0.a1
pyrus_communis	pycom04g00690
rosa_laevigata	RLG00000008086
rosa_multiflora	Rmu_sc0001421.1_g000010
rosa_roxburghii	Rroxscaffold_5G00359060
rosa_rugosa	Rorug04G0132500
rosa_samantha	Rh4AG193300 Rh4BG191700 Rh4CG204400 Rh4DG191200
rosa_wichuraiana	Rw4G016440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	453
AccI	GTMKAC	2 cut(s)	72, 291
AccIII	TCCGGA	1 cut(s)	414
AclWI	GGATC	3 cut(s)	365, 380, 393
AcoI	YGGCCR	1 cut(s)	444
AcsI	RAATTY	1 cut(s)	233
AfaI	GTAC	1 cut(s)	47
AfiI	CCNNNNNNNGG	2 cut(s)	244, 453
AlwI	GGATC	3 cut(s)	365, 380, 393
Ama87I	CYCGRG	1 cut(s)	79
Aor13HI	TCCGGA	1 cut(s)	414
AoxI	GGCC	2 cut(s)	146, 444
ApoI	RAATTY	1 cut(s)	233
ArsI	GACNNNNNNTTYG	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	98, 146
AvaI	CYCGRG	1 cut(s)	79
AvaII	GGWCC	1 cut(s)	98
BamHI	GGATCC	1 cut(s)	385
BbsI	GAAGAC	1 cut(s)	169
BccI	CCATC	1 cut(s)	236
BceAI	ACGGC	2 cut(s)	283, 459
BclI	TGATCA	1 cut(s)	138
BfaI	CTAG	1 cut(s)	459
BfmI	CTRYAG	1 cut(s)	88
Bme18I	GGWCC	1 cut(s)	98
BmeT110I	CYCGRG	1 cut(s)	79
BmgT120I	GGNCC	2 cut(s)	98, 146
BmiI	GGNNCC	2 cut(s)	147, 387
BmrI	ACTGGG	1 cut(s)	374
BmuI	ACTGGG	1 cut(s)	374
BpiI	GAAGAC	1 cut(s)	169
BsaJI	CCNNGG	2 cut(s)	243, 447
BsaWI	WCCGGW	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 453
Bse1I	ACTGG	5 cut(s)	14, 44, 101, 320, 380
Bse3DI	GCAATG	1 cut(s)	477
BseAI	TCCGGA	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	243, 447
BseGI	GGATG	2 cut(s)	48, 253
BseLI	CCNNNNNNNGG	2 cut(s)	244, 453
BseMI	GCAATG	1 cut(s)	477
BseNI	ACTGG	5 cut(s)	14, 44, 101, 320, 380
BsgI	GTGCAG	1 cut(s)	344
BshFI	GGCC	2 cut(s)	148, 446
BsiHKCI	CYCGRG	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	415
BslFI	GGGAC	1 cut(s)	292
BslI	CCNNNNNNNGG	2 cut(s)	244, 453
BsmFI	GGGAC	1 cut(s)	292
BsnI	GGCC	2 cut(s)	148, 446
BsoBI	CYCGRG	1 cut(s)	79
Bsp13I	TCCGGA	1 cut(s)	414
Bsp143I	GATC	3 cut(s)	138, 370, 385
BspANI	GGCC	2 cut(s)	148, 446
BspEI	TCCGGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	147, 387
BspMAI	CTGCAG	1 cut(s)	92
BspPI	GGATC	3 cut(s)	365, 380, 393
BspQI	GCTCTTC	1 cut(s)	416
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	5 cut(s)	14, 44, 101, 320, 380
BssECI	CCNNGG	2 cut(s)	243, 447
BssMI	GATC	3 cut(s)	138, 370, 385
BssT1I	CCWWGG	2 cut(s)	243, 447
Bst6I	CTCTTC	2 cut(s)	297, 416
BstC8I	GCNNGC	1 cut(s)	407
BstENI	CCTNNNNNAGG	1 cut(s)	242
BstF5I	GGATG	2 cut(s)	48, 253
BstKTI	GATC	3 cut(s)	141, 373, 388
BstMBI	GATC	3 cut(s)	138, 370, 385
BstSFI	CTRYAG	1 cut(s)	88
BstV2I	GAAGAC	1 cut(s)	169
BstX2I	RGATCY	1 cut(s)	385
BstYI	RGATCY	1 cut(s)	385
BsuRI	GGCC	2 cut(s)	148, 446
BtsCI	GGATG	2 cut(s)	48, 253
BtsI	GCAGTG	1 cut(s)	85
BtsIMutI	CAGTG	5 cut(s)	37, 85, 108, 327, 387
Cac8I	GCNNGC	1 cut(s)	407
Cfr13I	GGNCC	2 cut(s)	98, 146
Csp6I	GTAC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	363, 398
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	3 cut(s)	148, 339, 446
CviKI_1	RGCY	3 cut(s)	148, 339, 446
CviQI	GTAC	1 cut(s)	46
DpnI	GATC	3 cut(s)	140, 372, 387
DpnII	GATC	3 cut(s)	138, 370, 385
EaeI	YGGCCR	1 cut(s)	444
Eam1104I	CTCTTC	2 cut(s)	297, 416
EarI	CTCTTC	2 cut(s)	297, 416
Eco130I	CCWWGG	2 cut(s)	243, 447
Eco47I	GGWCC	1 cut(s)	98
Eco88I	CYCGRG	1 cut(s)	79
EcoNI	CCTNNNNNAGG	1 cut(s)	242
EcoT14I	CCWWGG	2 cut(s)	243, 447
ErhI	CCWWGG	2 cut(s)	243, 447
FaeI	CATG	1 cut(s)	145
FaiI	YATR	7 cut(s)	96, 137, 143, 165, 353, 355, 468
FaqI	GGGAC	1 cut(s)	292
FatI	CATG	1 cut(s)	141
FauNDI	CATATG	1 cut(s)	353
FbaI	TGATCA	1 cut(s)	138
FblI	GTMKAC	2 cut(s)	72, 291
FokI	GGATG	2 cut(s)	55, 240
FspBI	CTAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	148, 446
HapII	CCGG	1 cut(s)	415
Hin1II	CATG	1 cut(s)	145
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HinfI	GANTC	3 cut(s)	82, 155, 316
HpaII	CCGG	1 cut(s)	415
Hpy166II	GTNNAC	3 cut(s)	73, 292, 456
Hpy188III	TCNNGA	3 cut(s)	79, 365, 415
Hpy8I	GTNNAC	3 cut(s)	73, 292, 456
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	1 cut(s)	288
HpyCH4V	TGCA	3 cut(s)	90, 325, 470
HpySE526I	ACGT	1 cut(s)	288
Hsp92II	CATG	1 cut(s)	145
Kpn2I	TCCGGA	1 cut(s)	414
Ksp22I	TGATCA	1 cut(s)	138
Kzo9I	GATC	3 cut(s)	138, 370, 385
LguI	GCTCTTC	1 cut(s)	416
MaeI	CTAG	1 cut(s)	459
MaeII	ACGT	1 cut(s)	288
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	3 cut(s)	140, 372, 387
MboI	GATC	3 cut(s)	138, 370, 385
MboII	GAAGA	4 cut(s)	122, 169, 314, 403
MflI	RGATCY	1 cut(s)	385
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	91
MnlI	CCTC	6 cut(s)	57, 231, 265, 298, 350, 401
MroI	TCCGGA	1 cut(s)	414
MseI	TTAA	1 cut(s)	264
MspI	CCGG	1 cut(s)	415
NdeI	CATATG	1 cut(s)	353
NdeII	GATC	3 cut(s)	138, 370, 385
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	147, 387
NmuCI	GTSAC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	155, 316
PflMI	CCANNNNNTGG	1 cut(s)	453
PleI	GAGTC	1 cut(s)	90
PpsI	GAGTC	1 cut(s)	90
PspN4I	GGNNCC	2 cut(s)	147, 387
PspPI	GGNCC	2 cut(s)	98, 146
PstI	CTGCAG	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	385
RsaI	GTAC	1 cut(s)	47
RsaNI	GTAC	1 cut(s)	46
SalI	GTCGAC	1 cut(s)	290
SapI	GCTCTTC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	264
Sau3AI	GATC	3 cut(s)	138, 370, 385
Sau96I	GGNCC	2 cut(s)	98, 146
SchI	GAGTC	1 cut(s)	91
SetI	ASST	6 cut(s)	31, 136, 175, 223, 249, 291
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	98
Sse9I	AATT	1 cut(s)	233
SspI	AATATT	1 cut(s)	262
SspMI	CTAG	1 cut(s)	459
StyI	CCWWGG	2 cut(s)	243, 447
TaiI	ACGT	1 cut(s)	291
TaqI	TCGA	4 cut(s)	18, 291, 366, 438
TasI	AATT	1 cut(s)	233
TfiI	GAWTC	2 cut(s)	155, 316
Tru1I	TTAA	1 cut(s)	264
Tru9I	TTAA	1 cut(s)	264
TscAI	CASTG	5 cut(s)	44, 92, 108, 327, 387
TseFI	GTSAC	1 cut(s)	83
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	123
TspRI	CASTG	5 cut(s)	44, 92, 108, 327, 387
Van91I	CCANNNNNTGG	1 cut(s)	453
VpaK11BI	GGWCC	1 cut(s)	98
XagI	CCTNNNNNAGG	1 cut(s)	242
XapI	RAATTY	1 cut(s)	233
XmiI	GTMKAC	2 cut(s)	72, 291
XspI	CTAG	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.