FvH4_4g23590

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0014276
Physical Location & Seq
Reverse (-)
26024214 .. 26030841
6628 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g23590.t1

Sequence Viewer

Length: 3126 bp
ATGAGTTTGTTTCATGTATTCGGGTTTGGGTTAAAAGTGGGGCATCTGCTTTGGATGCTATGTTGCTGGATTGTGTCTGTGATTTCCATGAATTGGTACCTTAATGGTGTGACTATGGACACCAAGAGTAGTAGTACTAGTTTGCTTGGTGATGGCGCCAGGACGTGTCTCAAGTTGTGTGAGAAGATCCCATTGAACATTGCTAAGATCCGACACCATTATTACCAGTATATCGGGTCGAAAGGAGTTCGGAAGATATGGTGGAAGAGGCTCTTGATTTCTTGGGTGGTTGGCTGGACTGTTGTCAGCTTGTGTATCTTCTGGTACATGAGCTCAGTGGCTAGTGAGAAGAGGAAGGAGACTCTTACGAGTATGTGTGATGAGAGAGCAAGGATGTTGCAGGATCAGTTCAATGTGAGCATGAACCATATTCAGGCCATGTCCATTCTGATATCCACATTCCATCACGGCAAGAATCCGTCTGCAATTGATCAGAAAACTTTTGCAAGGTACACTGACAGAACTGCTTTCGAGAGACCTCTTACAAGTGGTGTGGCATATGCTGTAAGAGTACTCCACTCAGAAAAAGAACAATTTGAGAAGCAGCAAGGCTGGACTATCAAGAGCATGGATACCCTCGAGCAAAACCAAGTCCATAAGAATGACTACACCCCAGGACTGCTGGAGCCATCCCCAATTGAGGAAGAATATGCTCCTGTCATATTTGCTCAGGATACAGTTGCACATGTCATTTCTTTCGATATGCTCTCTGGGAAGGAAGATCGAGGTAATGTGTTGCGTGCAAGGGAATCAGGAAAGGGAGTCTTGACTGCTCCATTTCGGCTGCTTAAAACTAATAGCCTTGGAGTAATACTGACGTTTGCGGTCTACAAGAGAGAACTACCTTCAAATGCAACTCCAAATGAAAGAATTCAAGCAACCGATGGGTATCTAGGCGGGATTTTTCATATCGAGTCACTTGTGGAGAAGTTACTCCAACAACTTGCAAGCAAGCAAACTATCCTTGTCAATGTGTATGATACTACCAATCATTCACATCCAATCAGCATGTATGGCTCAAATGTTTCAGATGATGGATTGCGGCATATTAGCACCTTAAATTTTGGCGATCCTTTAAGGAAGCACGAAATGCACTGCAGATTCAAACATAAGCCACCATGGCCGTGGTTAGCCATCACAACTTCAATTGGGATCCTTGTGATTGCGTTGCTTGTTGGGCATATTTTTCATGCAACTATAAATAGGATTGCCAAAGTGGAAGATGATTTCCATAAAATGAGTGATCTCAAGAAACAGGCCGAGGCAGCTGATATTGCCAAGTCTCAGTTCCTAGCAACTGTTTCACATGAGATCAGAACCCCAATGAATGGTGTCCTAGGAATGTTGCACATGCTTATGGACACAGATTTAGATGTAACTCAACAAGATTATGTCAGAACTGCCCAAGGTAGTGGGAAAGCCCTAGTCTCACTTATAAATGAGGTCTTGGACCAGGCAAAAATTGAATCTGGTAAGCTGGAGCTTGAGGCAGTGCGTTTTGATCTGCGTGCAATTTTGGATGATGTTCTGTCTCTGTTTTCTGGGAAGTCTCAAGAAAAAGGAGTGGAGCTGGGAGTATACATCTCAGATCAGGTTCCTGACATGCTTATTGGTGACCCTGGAAGGTTTCGGCAAATTATCACCAATCTCATGGGGAACTCGATCAAATTCACAGAGAAAGGACACATCTTTGTCACCGTGCATCTGGTTGAGGAGTTGATCGACTCGATTGATGTTGAGACTGAATCATCATCGAAAAACACTTTGAGTGGGTTTCCGGTTGCAGATAAACACCGCAGCTGGGGAGGATTTAGGAGTTTCAGTGAAGAGGGATCTGCAAGCTCATTCTCATCATCGTCTGATGCCATCAATCTTATTGTGTCTGTTGAGGACACAGGGGTTGGAATCCCTCTAGAAGCCCAATCTCGTGTTTTCACTCCTTTTATGCAGGTGGGACCATCTATCTCACGGACACATGGTGGCACAGGAATTGGGCTAAGCATAAGCAAGTGTTTAGTTGGCCTCATGAGAGGGGAGATCGGTTTTGTGAGCATTCCCAAGATTGGTTCCACATTTACATTTACCGCTGTTTTCACCAAAGCCCGCTGTGATTCAAATGAATTTAAGATCCAGCAAATCAACAACCAAGCAAATGCTGCATCCTCAGAATTTCATGGCATGACGGCATTGGTCGTGGATCACAGACCTGTGAGGGCCAAGATGTCAAGATATCATATCCAGAGGCTTGGAATTCGTGTTGAAGTGGCTTCTGAGTTGCATCAGGGTTTGTCTTGCATAAGCTCCGGAAATACAACTATAAATATGGTCCTTGTTGAACAGGAGGTTTGGGATAACGACTCCGGCAGTTCTGCTCTCTTTATCGATAACTTGAAGAAACTGAATCGTGAGGTTCCTCCTAAGGTGTTCCTTCTTGCCAATTCCATTAGCAGTTGCAGAACGAGCTTTGTGAATTCAGGTGTCTGTACGCCAACAATTATCATGAAGCCTCTCAGGGCAAGTATGCTTGCTGCGTCACTACAAAGAGCCATGGGTATTGGTAACAAGGGTAATACACGGAATGGCGAGCTCCCAAGCTTATCCCTACGCAATCTTCTACTTGGAAGAAAAATTCTTATTGTGGATGATAATAAAGTGAACCTCATAGTAGCTGCTGGTGCTTTGAAAAAGTATGGGGCTACAGTGAAGAGTGCAGACAGTGGTAAGGAGGCAATCTCACTGCTCACACCGCCCCATAGTTTTGACGCCTGCTTCATGGATATCCAGATGCCGGAAATGGATGGTTTTGAAGCTACAAGGAGAATACGTGACATAGAACGCAATGTCAGCAATCGTATTCAACATGGGGAGGTTTCTGCGGAGGACTATGACAATATCTTAACATGGCATGTACCCATTCTGGCCATGACTGCAGATGTTATTCAGGCCACCCATGAGGAATGCACCAAGTGTGGAATGGACGGATATGTTTCCAAACCATTTGAAGCTGAACAGCTTTATCGAGAAGTTTCACGTTTTCTCCAATCTCCTGCAAAAGGTACTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

1042

Amino Acids

115.66

Weight (kDa)

7.41

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 162 - 358 5.6e-37 CHASE domain
HisKA PF00512 446 - 511 4.4e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 643 - 715 3.3e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 741 - 871 2.5e-44 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 897 - 1028 6.6e-20 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27320
fragaria_vesca FvH4_4g23590 FvH4_4g23590 FvH4_4g23590 FvH4_4g23590
malus_domestica MD13G1120900.v1.1 MD16G1068400.v1.1 MD16G1120900.v1.1
prunus_persica Prupe.1G224300_v2.0.a1
pyrus_communis pycom13g10520
rosa_chinensis RchiOBHm_Chr4g0430011
rosa_laevigata RLG00000007014
rosa_roxburghii Rroxscaffold_5G00371820
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG302900 Rh4CG318400
rosa_wichuraiana Rw4G025680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1496
AarI CACCTGC 1 cut(s) 1999
Acc36I ACCTGC 1 cut(s) 1999
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 155
AccB7I CCANNNNNTGG 2 cut(s) 93, 1388
AccI GTMKAC 2 cut(s) 888, 1638
AccIII TCCGGA 1 cut(s) 2363
AciI CCGC 8 cut(s) 884, 957, 1102, 1855, 2145, 2164, 2807, 2936
AclWI GGATC 9 cut(s) 181, 202, 411, 1124, 1207, 1220, 1900, 2182, 2265
AcoI YGGCCR 2 cut(s) 1181, 2979
AcsI RAATTY 8 cut(s) 930, 1120, 1727, 2180, 2228, 2310, 2530, 2688
AcyI GRCGYC 2 cut(s) 156, 2823
AdeI CACNNNGTG 2 cut(s) 2039, 3027
AfaI GTAC 8 cut(s) 98, 136, 326, 512, 573, 2545, 2970, 3118
AfiI CCNNNNNNNGG 8 cut(s) 93, 433, 700, 1388, 1861, 2123, 2848, 3113
AflIII ACRYGT 2 cut(s) 164, 745
AhlI ACTAGT 1 cut(s) 137
AjiI CACGTC 1 cut(s) 165
AjnI CCWGG 4 cut(s) 158, 673, 1512, 1678
AjuI GAANNNNNNNTTGG 2 cut(s) 1331, 1363
Alw21I GWGCWC 2 cut(s) 335, 2649
Alw26I GTCTC 8 cut(s) 173, 353, 529, 1347, 1492, 1596, 1614, 1793
AlwI GGATC 9 cut(s) 181, 202, 411, 1124, 1207, 1220, 1900, 2182, 2265
Ama87I CYCGRG 1 cut(s) 638
Aor13HI TCCGGA 1 cut(s) 2363
AoxI GGCC 7 cut(s) 435, 1181, 1317, 2080, 2274, 2979, 3003
ApeKI GCWGC 7 cut(s) 604, 844, 1325, 1857, 2216, 2588, 2729
ApoI RAATTY 8 cut(s) 930, 1120, 1727, 2180, 2228, 2310, 2530, 2688
Asp700I GAANNNNTTC 1 cut(s) 930
Asp718I GGTACC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 1396
AspLEI GCGC 1 cut(s) 158
AspS9I GGNCC 4 cut(s) 1510, 2015, 2274, 2386
AsuHPI GGTGA 5 cut(s) 161, 1685, 1693, 1747, 2146
AvaI CYCGRG 1 cut(s) 638
AvaII GGWCC 3 cut(s) 1510, 2015, 2386
AvrII CCTAGG 1 cut(s) 1396
AxyI CCTNAGG 1 cut(s) 2478
BalI TGGCCA 1 cut(s) 2981
BamHI GGATCC 1 cut(s) 1212
BanI GGYRCC 2 cut(s) 96, 155
BanII GRGCYC 2 cut(s) 335, 2649
BauI CACGAG 1 cut(s) 1986
Bbv12I GWGCWC 2 cut(s) 335, 2649
BbvI GCAGC 7 cut(s) 616, 831, 1337, 1869, 2203, 2575, 2716
BccI CCATC 9 cut(s) 146, 471, 697, 938, 1088, 1202, 1934, 2026, 2852
BceAI ACGGC 3 cut(s) 484, 1168, 2259
BciT130I CCWGG 4 cut(s) 160, 675, 1514, 1680
BciVI GTATCC 2 cut(s) 625, 727
BclI TGATCA 1 cut(s) 490
BcoDI GTCTC 8 cut(s) 173, 353, 529, 1347, 1492, 1596, 1614, 1793
BcuI ACTAGT 1 cut(s) 137
BfaI CTAG 7 cut(s) 138, 342, 953, 1352, 1397, 1484, 1973
BfmI CTRYAG 3 cut(s) 1156, 2757, 2988
BfoI RGCGCY 1 cut(s) 159
BfuAI ACCTGC 1 cut(s) 1999
BfuI GTATCC 2 cut(s) 625, 727
BglI GCCNNNNNGGC 1 cut(s) 1180
BisI GCNGC 8 cut(s) 605, 845, 1103, 1326, 1858, 2217, 2589, 2730
BlnI CCTAGG 1 cut(s) 1396
BlpI GCTNAGC 1 cut(s) 2057
BlsI GCNGC 8 cut(s) 606, 846, 1104, 1327, 1859, 2218, 2590, 2731
BmcAI AGTACT 2 cut(s) 136, 573
Bme1390I CCNGG 4 cut(s) 160, 675, 1514, 1680
Bme18I GGWCC 3 cut(s) 1510, 2015, 2386
BmeT110I CYCGRG 1 cut(s) 638
BmgBI CACGTC 1 cut(s) 165
BmgT120I GGNCC 4 cut(s) 1510, 2015, 2274, 2386
BmiI GGNNCC 8 cut(s) 98, 157, 687, 1214, 1656, 2016, 2128, 2472
BmrFI CCNGG 4 cut(s) 160, 675, 1514, 1680
BmsI GCATC 7 cut(s) 45, 52, 1771, 1912, 2228, 2347, 2835
BoxI GACNNNNGTC 1 cut(s) 302
BplI GAGNNNNNCTC 2 cut(s) 2777, 2809
BpmI CTGGAG 2 cut(s) 704, 1559
Bpu10I CCTNAGC 1 cut(s) 729
Bpu1102I GCTNAGC 1 cut(s) 2057
BpuEI CTTGAG 4 cut(s) 155, 1292, 1565, 1596
Bsa29I ATCGAT 1 cut(s) 2442
BsaAI YACGTR 1 cut(s) 2885
BsaBI GATNNNNATC 1 cut(s) 948
BsaHI GRCGYC 2 cut(s) 156, 2823
BsaI GGTCTC 1 cut(s) 529
BsaJI CCNNGG 9 cut(s) 673, 862, 1178, 1184, 1320, 1396, 1465, 1678, 2607
BsaWI WCCGGW 2 cut(s) 1837, 2363
BsaXI ACNNNNNCTCC 6 cut(s) 1867, 1897, 2869, 2899, 3081, 3111
Bsc4I CCNNNNNNNGG 8 cut(s) 93, 433, 700, 1388, 1861, 2123, 2848, 3113
Bse1I ACTGG 1 cut(s) 226
Bse21I CCTNAGG 1 cut(s) 2478
Bse3DI GCAATG 2 cut(s) 198, 2905
Bse8I GATNNNNATC 1 cut(s) 948
BseAI TCCGGA 1 cut(s) 2363
BseBI CCWGG 4 cut(s) 160, 675, 1514, 1680
BseCI ATCGAT 1 cut(s) 2442
BseDI CCNNGG 9 cut(s) 673, 862, 1178, 1184, 1320, 1396, 1465, 1678, 2607
BseGI GGATG 8 cut(s) 60, 399, 689, 1057, 1585, 2219, 2707, 2863
BseJI GATNNNNATC 1 cut(s) 948
BseLI CCNNNNNNNGG 8 cut(s) 93, 433, 700, 1388, 1861, 2123, 2848, 3113
BseMI GCAATG 2 cut(s) 198, 2905
BseMII CTCAG 8 cut(s) 348, 594, 743, 1358, 1659, 2238, 2322, 2584
BseNI ACTGG 1 cut(s) 226
BseRI GAGGAG 1 cut(s) 1787
BseXI GCAGC 7 cut(s) 616, 831, 1337, 1869, 2203, 2575, 2716
BseYI CCCAGC 2 cut(s) 1630, 1860
BsgI GTGCAG 1 cut(s) 2790
BshFI GGCC 7 cut(s) 437, 1183, 1319, 2082, 2276, 2981, 3005
BshNI GGYRCC 2 cut(s) 96, 155
BshVI ATCGAT 1 cut(s) 2442
BsiHKAI GWGCWC 2 cut(s) 335, 2649
BsiHKCI CYCGRG 1 cut(s) 638
BsiSI CCGG 4 cut(s) 1838, 2364, 2421, 2849
BslFI GGGAC 1 cut(s) 2028
BslI CCNNNNNNNGG 8 cut(s) 93, 433, 700, 1388, 1861, 2123, 2848, 3113
BsmAI GTCTC 8 cut(s) 173, 353, 529, 1347, 1492, 1596, 1614, 1793
BsmFI GGGAC 1 cut(s) 2028
BsmI GAATGC 2 cut(s) 2112, 3023
BsnI GGCC 7 cut(s) 437, 1183, 1319, 2082, 2276, 2981, 3005
Bso31I GGTCTC 1 cut(s) 529
BsoBI CYCGRG 1 cut(s) 638
Bsp1286I GDGCHC 2 cut(s) 335, 2649
Bsp13I TCCGGA 1 cut(s) 2363
Bsp1720I GCTNAGC 1 cut(s) 2057
Bsp19I CCATGG 2 cut(s) 1178, 2607
BspACI CCGC 8 cut(s) 884, 957, 1102, 1855, 2145, 2164, 2807, 2936
BspANI GGCC 7 cut(s) 437, 1183, 1319, 2082, 2276, 2981, 3005
BspCNI CTCAG 8 cut(s) 347, 593, 742, 1357, 1658, 2237, 2323, 2583
BspDI ATCGAT 1 cut(s) 2442
BspEI TCCGGA 1 cut(s) 2363
BspHI TCATGA 2 cut(s) 2085, 2559
BspLI GGNNCC 8 cut(s) 98, 157, 687, 1214, 1656, 2016, 2128, 2472
BspMAI CTGCAG 2 cut(s) 1160, 2992
BspMI ACCTGC 1 cut(s) 1999
BspPI GGATC 9 cut(s) 181, 202, 411, 1124, 1207, 1220, 1900, 2182, 2265
BspT107I GGYRCC 2 cut(s) 96, 155
BspTNI GGTCTC 1 cut(s) 529
BsrDI GCAATG 2 cut(s) 198, 2905
BsrI ACTGG 1 cut(s) 226
BssECI CCNNGG 9 cut(s) 673, 862, 1178, 1184, 1320, 1396, 1465, 1678, 2607
BssNAI GTATAC 1 cut(s) 1639
BssNI GRCGYC 2 cut(s) 156, 2823
BssSI CACGAG 1 cut(s) 1986
BssT1I CCWWGG 5 cut(s) 862, 1178, 1396, 1465, 2607
Bst1107I GTATAC 1 cut(s) 1639
Bst2BI CACGAG 1 cut(s) 1986
Bst2UI CCWGG 4 cut(s) 160, 675, 1514, 1680
Bst4CI ACNGT 6 cut(s) 301, 739, 1360, 1759, 2761, 2777
Bst6I CTCTTC 4 cut(s) 260, 344, 1881, 2759
BstACI GRCGYC 2 cut(s) 156, 2823
BstAPI GCANNNNNTGC 2 cut(s) 1150, 2216
BstBAI YACGTR 1 cut(s) 2885
BstC8I GCNNGC 9 cut(s) 801, 1009, 1013, 1569, 1900, 2164, 2586, 2645, 2827
BstDSI CCRYGG 3 cut(s) 1178, 1184, 2607
BstEII GGTNACC 1 cut(s) 1673
BstENI CCTNNNNNAGG 1 cut(s) 3111
BstF5I GGATG 8 cut(s) 60, 399, 689, 1057, 1585, 2219, 2707, 2863
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstMAI GTCTC 8 cut(s) 173, 353, 529, 1347, 1492, 1596, 1614, 1793
BstNI CCWGG 4 cut(s) 160, 675, 1514, 1680
BstNSI RCATGY 5 cut(s) 749, 1072, 1414, 1666, 2969
BstPAI GACNNNNGTC 1 cut(s) 302
BstPI GGTNACC 1 cut(s) 1673
BstSCI CCNGG 4 cut(s) 158, 673, 1512, 1678
BstSFI CTRYAG 3 cut(s) 1156, 2757, 2988
BstV1I GCAGC 7 cut(s) 616, 831, 1337, 1869, 2203, 2575, 2716
BstX2I RGATCY 5 cut(s) 186, 207, 1212, 1892, 2187
BstXI CCANNNNNNTGG 4 cut(s) 1185, 1472, 1711, 2306
BstYI RGATCY 5 cut(s) 186, 207, 1212, 1892, 2187
BstZ17I GTATAC 1 cut(s) 1639
Bsu15I ATCGAT 1 cut(s) 2442
Bsu36I CCTNAGG 1 cut(s) 2478
BsuI GTATCC 2 cut(s) 625, 727
BsuRI GGCC 7 cut(s) 437, 1183, 1319, 2082, 2276, 2981, 3005
BsuTUI ATCGAT 1 cut(s) 2442
BtgI CCRYGG 3 cut(s) 1178, 1184, 2607
BtrI CACGTC 1 cut(s) 165
BtsCI GGATG 8 cut(s) 60, 399, 689, 1057, 1585, 2219, 2707, 2863
BtsI GCAGTG 3 cut(s) 1153, 1557, 2795
BtsIMutI CAGTG 8 cut(s) 342, 513, 1153, 1557, 1888, 2766, 2782, 2795
BveI ACCTGC 1 cut(s) 1999
Cac8I GCNNGC 9 cut(s) 801, 1009, 1013, 1569, 1900, 2164, 2586, 2645, 2827
CciI TCATGA 2 cut(s) 2085, 2559
CfoI GCGC 1 cut(s) 158
Cfr13I GGNCC 4 cut(s) 1510, 2015, 2274, 2386
ClaI ATCGAT 1 cut(s) 2442
CseI GACGC 2 cut(s) 2580, 2831
Csp6I GTAC 8 cut(s) 97, 135, 325, 511, 572, 2544, 2969, 3117
CspCI CAANNNNNGTGG 2 cut(s) 534, 569
CviQI GTAC 8 cut(s) 97, 135, 325, 511, 572, 2544, 2969, 3117
DinI GGCGCC 1 cut(s) 157
DraIII CACNNNGTG 2 cut(s) 2039, 3027
EaeI YGGCCR 2 cut(s) 1181, 2979
Eam1104I CTCTTC 4 cut(s) 260, 344, 1881, 2759
EarI CTCTTC 4 cut(s) 260, 344, 1881, 2759
Ecl136II GAGCTC 2 cut(s) 333, 2647
Eco130I CCWWGG 5 cut(s) 862, 1178, 1396, 1465, 2607
Eco24I GRGCYC 2 cut(s) 335, 2649
Eco31I GGTCTC 1 cut(s) 529
Eco32I GATATC 3 cut(s) 453, 2291, 2839
Eco47I GGWCC 3 cut(s) 1510, 2015, 2386
Eco53kI GAGCTC 2 cut(s) 333, 2647
Eco81I CCTNAGG 1 cut(s) 2478
Eco88I CYCGRG 1 cut(s) 638
Eco91I GGTNACC 1 cut(s) 1673
EcoICRI GAGCTC 2 cut(s) 333, 2647
EcoNI CCTNNNNNAGG 1 cut(s) 3111
EcoO65I GGTNACC 1 cut(s) 1673
EcoRI GAATTC 3 cut(s) 930, 2310, 2530
EcoRII CCWGG 4 cut(s) 158, 673, 1512, 1678
EcoRV GATATC 3 cut(s) 453, 2291, 2839
EcoT14I CCWWGG 5 cut(s) 862, 1178, 1396, 1465, 2607
EcoT38I GRGCYC 2 cut(s) 335, 2649
EgeI GGCGCC 1 cut(s) 157
EheI GGCGCC 1 cut(s) 157
ErhI CCWWGG 5 cut(s) 862, 1178, 1396, 1465, 2607
FalI AAGNNNNNCTT 4 cut(s) 257, 289, 809, 841
FaqI GGGAC 1 cut(s) 2028
FauI CCCGC 2 cut(s) 950, 2171
FauNDI CATATG 1 cut(s) 559
FbaI TGATCA 1 cut(s) 490
FblI GTMKAC 2 cut(s) 888, 1638
Fnu4HI GCNGC 8 cut(s) 605, 845, 1103, 1326, 1858, 2217, 2589, 2730
FokI GGATG 8 cut(s) 67, 406, 676, 1044, 1592, 2206, 2714, 2870
FriOI GRGCYC 2 cut(s) 335, 2649
Fsp4HI GCNGC 8 cut(s) 605, 845, 1103, 1326, 1858, 2217, 2589, 2730
FspBI CTAG 7 cut(s) 138, 342, 953, 1352, 1397, 1484, 1973
GlaI GCGC 1 cut(s) 157
GluI GCNGC 8 cut(s) 605, 845, 1103, 1326, 1858, 2217, 2589, 2730
GsaI CCCAGC 2 cut(s) 1634, 1864
GsuI CTGGAG 2 cut(s) 704, 1559
HaeII RGCGCY 1 cut(s) 159
HaeIII GGCC 7 cut(s) 437, 1183, 1319, 2082, 2276, 2981, 3005
HapII CCGG 4 cut(s) 1838, 2364, 2421, 2849
HgaI GACGC 2 cut(s) 2580, 2831
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 2 cut(s) 156, 2823
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HindIII AAGCTT 1 cut(s) 2653
HpaII CCGG 4 cut(s) 1838, 2364, 2421, 2849
HphI GGTGA 5 cut(s) 161, 1685, 1693, 1747, 2146
Hpy166II GTNNAC 4 cut(s) 513, 889, 1639, 2716
Hpy8I GTNNAC 4 cut(s) 513, 889, 1639, 2716
HpyAV CCTTC 5 cut(s) 349, 769, 915, 1677, 2498
HpyCH4III ACNGT 6 cut(s) 301, 739, 1360, 1759, 2761, 2777
HpyCH4IV ACGT 4 cut(s) 164, 878, 2884, 3091
HpySE526I ACGT 4 cut(s) 164, 878, 2884, 3091
Hsp92I GRCGYC 2 cut(s) 156, 2823
HspAI GCGC 1 cut(s) 156
KasI GGCGCC 1 cut(s) 155
Kpn2I TCCGGA 1 cut(s) 2363
KpnI GGTACC 1 cut(s) 100
Ksp22I TGATCA 1 cut(s) 490
LmnI GCTCC 7 cut(s) 685, 718, 838, 1540, 1627, 2366, 2652
Lsp1109I GCAGC 7 cut(s) 616, 831, 1337, 1869, 2203, 2575, 2716
LweI GCATC 7 cut(s) 45, 52, 1771, 1912, 2228, 2347, 2835
MaeI CTAG 7 cut(s) 138, 342, 953, 1352, 1397, 1484, 1973
MaeII ACGT 4 cut(s) 164, 878, 2884, 3091
MaeIII GTNAC 9 cut(s) 109, 975, 990, 1435, 1673, 1753, 2592, 2618, 2885
MfeI CAATTG 3 cut(s) 486, 696, 1206
MflI RGATCY 5 cut(s) 186, 207, 1212, 1892, 2187
MhlI GDGCHC 2 cut(s) 335, 2649
MlsI TGGCCA 1 cut(s) 2981
MluNI TGGCCA 1 cut(s) 2981
Mly113I GGCGCC 1 cut(s) 156
MlyI GAGTC 5 cut(s) 355, 831, 983, 1778, 2411
MmeI TCCRAC 3 cut(s) 235, 1021, 1942
Mox20I TGGCCA 1 cut(s) 2981
MroI TCCGGA 1 cut(s) 2363
MroXI GAANNNNTTC 1 cut(s) 930
MscI TGGCCA 1 cut(s) 2981
MseI TTAA 7 cut(s) 32, 102, 849, 1118, 1136, 2184, 2957
MslI CAYNNNNRTG 3 cut(s) 660, 1183, 1415
Msp20I TGGCCA 1 cut(s) 2981
MspA1I CMGCKG 4 cut(s) 1328, 1860, 2147, 2166
MspI CCGG 4 cut(s) 1838, 2364, 2421, 2849
MspR9I CCNGG 4 cut(s) 160, 675, 1514, 1680
MunI CAATTG 3 cut(s) 486, 696, 1206
Mva1269I GAATGC 2 cut(s) 2112, 3023
MvaI CCWGG 4 cut(s) 160, 675, 1514, 1680
NarI GGCGCC 1 cut(s) 156
NcoI CCATGG 2 cut(s) 1178, 2607
NdeI CATATG 1 cut(s) 559
NlaIV GGNNCC 8 cut(s) 98, 157, 687, 1214, 1656, 2016, 2128, 2472
NmeAIII GCCGAG 1 cut(s) 1345
NmuCI GTSAC 6 cut(s) 109, 975, 1673, 1753, 2592, 2885
NspI RCATGY 5 cut(s) 749, 1072, 1414, 1666, 2969
PaeR7I CTCGAG 1 cut(s) 638
PagI TCATGA 2 cut(s) 2085, 2559
PaqCI CACCTGC 1 cut(s) 1999
PciI ACATGT 1 cut(s) 745
PctI GAATGC 2 cut(s) 2112, 3023
PdmI GAANNNNTTC 1 cut(s) 930
PfeI GAWTC 8 cut(s) 475, 809, 1161, 1526, 1805, 1965, 2171, 2461
PflMI CCANNNNNTGG 2 cut(s) 93, 1388
PkrI GCNGC 8 cut(s) 606, 846, 1104, 1327, 1859, 2218, 2590, 2731
PleI GAGTC 5 cut(s) 355, 830, 982, 1778, 2411
PluTI GGCGCC 1 cut(s) 159
PpsI GAGTC 5 cut(s) 355, 830, 982, 1778, 2411
Ppu21I YACGTR 1 cut(s) 2885
PscI ACATGT 1 cut(s) 745
PshAI GACNNNNGTC 1 cut(s) 302
PsiI TTATAA 1 cut(s) 1496
Psp124BI GAGCTC 2 cut(s) 335, 2649
Psp6I CCWGG 4 cut(s) 158, 673, 1512, 1678
PspEI GGTNACC 1 cut(s) 1673
PspFI CCCAGC 2 cut(s) 1630, 1860
PspGI CCWGG 4 cut(s) 158, 673, 1512, 1678
PspN4I GGNNCC 8 cut(s) 98, 157, 687, 1214, 1656, 2016, 2128, 2472
PspPI GGNCC 4 cut(s) 1510, 2015, 2274, 2386
PspXI VCTCGAGB 1 cut(s) 638
PstI CTGCAG 2 cut(s) 1160, 2992
PsuI RGATCY 5 cut(s) 186, 207, 1212, 1892, 2187
PvuII CAGCTG 2 cut(s) 1328, 1860
RsaI GTAC 8 cut(s) 98, 136, 326, 512, 573, 2545, 2970, 3118
RsaNI GTAC 8 cut(s) 97, 135, 325, 511, 572, 2544, 2969, 3117
RseI CAYNNNNRTG 3 cut(s) 660, 1183, 1415
SacI GAGCTC 2 cut(s) 335, 2649
SaqAI TTAA 7 cut(s) 32, 102, 849, 1118, 1136, 2184, 2957
SatI GCNGC 8 cut(s) 605, 845, 1103, 1326, 1858, 2217, 2589, 2730
Sau96I GGNCC 4 cut(s) 1510, 2015, 2274, 2386
ScaI AGTACT 2 cut(s) 136, 573
SchI GAGTC 5 cut(s) 355, 831, 983, 1778, 2411
ScrFI CCNGG 4 cut(s) 160, 675, 1514, 1680
SduI GDGCHC 2 cut(s) 335, 2649
SfaNI GCATC 7 cut(s) 45, 52, 1771, 1912, 2228, 2347, 2835
SfcI CTRYAG 3 cut(s) 1156, 2757, 2988
SfoI GGCGCC 1 cut(s) 157
Sfr274I CTCGAG 1 cut(s) 638
SinI GGWCC 3 cut(s) 1510, 2015, 2386
SlaI CTCGAG 1 cut(s) 638
SmiMI CAYNNNNRTG 3 cut(s) 660, 1183, 1415
SmlI CTYRAG 5 cut(s) 170, 638, 1307, 1544, 1611
SmoI CTYRAG 5 cut(s) 170, 638, 1307, 1544, 1611
SpeI ACTAGT 1 cut(s) 137
SsiI CCGC 8 cut(s) 884, 957, 1102, 1855, 2145, 2164, 2807, 2936
SspDI GGCGCC 1 cut(s) 155
SspMI CTAG 7 cut(s) 138, 342, 953, 1352, 1397, 1484, 1973
SstI GAGCTC 2 cut(s) 335, 2649
StyD4I CCNGG 4 cut(s) 158, 673, 1512, 1678
StyI CCWWGG 5 cut(s) 862, 1178, 1396, 1465, 2607
TaaI ACNGT 6 cut(s) 301, 739, 1360, 1759, 2761, 2777
TaiI ACGT 4 cut(s) 167, 881, 2887, 3094
TatI WGTACW 2 cut(s) 134, 571
TauI GCSGC 1 cut(s) 1105
TfiI GAWTC 8 cut(s) 475, 809, 1161, 1526, 1805, 1965, 2171, 2461
Tru1I TTAA 7 cut(s) 32, 102, 849, 1118, 1136, 2184, 2957
Tru9I TTAA 7 cut(s) 32, 102, 849, 1118, 1136, 2184, 2957
TscAI CASTG 8 cut(s) 342, 520, 1160, 1557, 1888, 2766, 2782, 2802
TseFI GTSAC 6 cut(s) 109, 975, 1673, 1753, 2592, 2885
TseI GCWGC 7 cut(s) 604, 844, 1325, 1857, 2216, 2588, 2729
Tsp45I GTSAC 6 cut(s) 109, 975, 1673, 1753, 2592, 2885
TspGWI ACGGA 4 cut(s) 468, 2044, 2650, 3054
TspRI CASTG 8 cut(s) 342, 520, 1160, 1557, 1888, 2766, 2782, 2802
Van91I CCANNNNNTGG 2 cut(s) 93, 1388
VpaK11BI GGWCC 3 cut(s) 1510, 2015, 2386
XagI CCTNNNNNAGG 1 cut(s) 3111
XapI RAATTY 8 cut(s) 930, 1120, 1727, 2180, 2228, 2310, 2530, 2688
XbaI TCTAGA 1 cut(s) 1972
XceI RCATGY 5 cut(s) 749, 1072, 1414, 1666, 2969
XcmI CCANNNNNNNNNTGG 2 cut(s) 1182, 3031
XhoI CTCGAG 1 cut(s) 638
XmaJI CCTAGG 1 cut(s) 1396
XmiI GTMKAC 2 cut(s) 888, 1638
XmnI GAANNNNTTC 1 cut(s) 930
XspI CTAG 7 cut(s) 138, 342, 953, 1352, 1397, 1484, 1973
ZrmI AGTACT 2 cut(s) 136, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.