Rw4G025680

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0014276
Physical Location & Seq
Reverse (-)
51816206 .. 51821271
5066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G025680.1

Sequence Viewer

Length: 3078 bp
ATGAGTTTGCTTCATGTCTTCGGGTTCGGTTTAAAAGTGGGGCATCTACTTTGGATGCTATGTTGCTGGATTGTTTCTGTGATTTCCATGAATTGGTACCTTAATGGTGGAATTATGGACACCAAGAGTAGTAGTTTGCTTGGTGATGGCGCCAATATGTGCCTCAAATTGTGGGAGAAGATCCCATTGAACATTACTAAGATCCGCCATCATTACTACCAGTATATTGGGTCCAAGAGAGTTCAGAAGACTTGGTGGAAGAGGCTCTTGGTTTCCTGGGTGGTTGGTTGGACTATTGCTTGCTTTTGGATCTTCTGGTACATGAGCTCAGTGGCTGCTGAGAAGAGGAAAGAGACTCTTACGAGTATGTGTGATGAGAGAGCAAGGATGTTGCAGGATCAGTTTAATGTGAGCATGAACCATATTCAGGCCATGTCGATTCTCATCTCGACATTCCACCACGCCAAGTATCCATCTGCAATTGACCAGAGAACTTTTGCGAGGTACACTGAAAGAACTGCTTTTGAGAGACCTCTTACAAGTGGCGTGGCATATGCTGTAAGGGTGCTCCACTCGGAGAAAGAACAATTTGAGAAGCAGCAAGGCTGGACTATCAAGAGAATGGATACCCTCGAACACAACCAAGTCCATAAGAATGACTATACCCCAGAATTGCTGGAGCCACCCCCAATTCAGGAAGAATATGCTCCTGTGATATTTGCTCAGGATACTGTTGCACATGTCATTTCTTTCGATATGCTGTCTGGGAAGGAAGATCGAGATAATGTGTTGCGCGCAAGAGAATCAGGAAAGGGGGTCTTGACTGCTCCATTTCGGCTGCTTAAAACTAATAGGCTTGGAGTAATACTGACCTTTGCTGTCTACAAGAGAGATCTACCTTCAAATGCAACTCCAAATGAAAGAATTCAAGCAACCGATGGGTATCTAGGCGGAATCTTTCATATTGAGTCACTTGTGGAGAAGTTACTTCAACAACTTGCAAGCAAGCAAACTATCCTTGTCAATGTGTATGATACTACCAATCATTCGGAGCCAATCAGCATGTATGGTTCAAATGTTTCAGATTATGGATTGCGGCATATTAGTACCTTAAATTTTGGAGATCCCTTAAGGAAGCATGAGATGCACTGCAGATTCAAACATAAGCCACCATGGCCATGGTTAGCCATCACAACTTCAATTGGGATCCTTGTGATTGTGTTGCTTGTTGGGCATATTTTTCATGCAACTGTAAATAGGATTGCCAAAGTGGAAGATGATTTCCATAAAATGAGCGATCTCAAGAAACAGGCCGAAGCTGCTGATGTTGCCAAATCTCAGTTCCTTGCAACTGTATCCCATGAGATTAGAACCCCAATGAACGGTGTCCTAGGTATGTTGCACATGCTTATGGATACAGATCTAGATGTAACTCAACAAGATTATGTCAGAACTGCCCAGGGTAGTGGAAAAGCCCTAGTCTCACTTATAAATGAGGTCTTGGACCAGGCAAAAATTGAATCTGGTAAGCTGGAGCTCGAGGCAGTGCGTTTTGATCTGCGAGCAATTTTGGATGATGTTTTGTCACTGTTTTCTGGGAAGTCTCAAGAAAAAGGAGTGGAGCTGGGAGTATACATCTCAGATCAGGTTCCTGAAATGCTTATTGGTGATCCTGGAAGGTTTCGGCAAATTATTACCAATCTCATGGGGAATTCGATCAAATTCACAGAGAAAGGACACATCTTTGTCACTGTCCATTTGGTTGAGGAGCTGATTGACTCGATAGACGTTGAGACTGAATCATCATCGAAAAACACTTTGAGTGGGTTCCCTGTTGCGGATAAACGCTGCAGCTGGGAAGGATTTAGGGGTTTCAGTGAAGAGGGATCTGCAAGCTCGTTCTCATCGTCGGTTGGAATCCCTCTAGAAGCCCAATCTCGTGTTTTCACTCCTTTTATGCAGGTGGGACCATCTATCTCACGGACACATGGTGGCACAGGAATTGGACTAAGCATAAGCAAGTGTTTAGTTGGCCTCATGAGAGGGGAGATTGGTTTTGTGAGCATTCCCAAGGTTGGTTCCACGTTTACATTTACTGCTGTTTTCGCCAAAGCCCGCTGTGATTCGAATGAATTTAAGATCCAGCAAATCAACAGCCAAGCAAATGCTGCATCCTCAGACTTTCATGGCATGACAGCATTGGTTGTGGATCACAGACCTGTGAGGGCCAAGATGTCAAGATATCATATCCAGAGGCTTGGAATTCGTGTTGAAGTCGCTTCTGAGTTGCATCAGGCTTTGTCTTGCATAAGCTCTGGGAATACGACTATAAATATGGTCCTTGTTGAACAGGAGGTTTGGGATAATGATTCATGCAGTTCAGCTCTCTTTATTGATAACTTAAAGAAACTTAAATGTCCGATTCCTCCTAAGCTGTTCCTTCTTGCCAATTCTATAAGCAGTTGCAGAACAAGCTTTGTGAATTCAGGTGTCTGTACGCCAAGTATTATCATGAAGCCTCTCAGGGCAAGTATGCTTGCTGCCTCACTACAAAGAGCCATGGGAATTGGTAACAAGGGTAATACACGGAATGGTGAGCTCCCAAGTTTGTCTCTCCGCAATCTTCTACTTGGAAGAAAAATTCTTATTGTGGATGATAATAAAGTGAACCTCATAGTAGCTGCTGGTGCTTTGAAAAAGTATGGGGCTACAGTGAAGAGTGCAGACAGCGGTAGAGAGGCAATCTCACTGCTTACACCACCACATAGTTTTGATGCCTGCTTCATGGATATCCAGATGCCGGAAATGGATGGTTTTGAAGCTACGAGGAGAATACGCGACATAGAACGCAATGTCAGCAATAGTATTCAACATGGCGAGGTTTCTGCGGAGGACTATGACAATATTTTATCATGGCATGTACCCATTCTGGCCATGACTGCAGATGTTATTCAGGCCACCCATGAGGAATGCACAAGGTGTGGAATGGATGGATATGTTTCTAAACCATTTGAAGCTGAACAGCTTTATCGAGAAGTTTCACGTTTTCTCCTATCTCCTGCAAAAGGTACTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

1025

Amino Acids

114.54

Weight (kDa)

7.83

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 160 - 356 3.8e-38 CHASE domain
HisKA PF00512 444 - 509 4.3e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 556 - 699 8.1e-15 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 725 - 855 1.2e-43 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 881 - 1012 2.1e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27320
fragaria_vesca FvH4_4g23590 FvH4_4g23590 FvH4_4g23590 FvH4_4g23590
malus_domestica MD13G1120900.v1.1 MD16G1068400.v1.1 MD16G1120900.v1.1
prunus_persica Prupe.1G224300_v2.0.a1
pyrus_communis pycom13g10520
rosa_chinensis RchiOBHm_Chr4g0430011
rosa_laevigata RLG00000007014
rosa_roxburghii Rroxscaffold_5G00371820
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG302900 Rh4CG318400
rosa_wichuraiana Rw4G025680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1490
AarI CACCTGC 1 cut(s) 1951
Acc36I ACCTGC 1 cut(s) 1951
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 149
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 2 cut(s) 882, 1632
AccII CGCG 2 cut(s) 795, 2838
AciI CCGC 8 cut(s) 205, 951, 1096, 1838, 2116, 2617, 2730, 2888
AcoI YGGCCR 2 cut(s) 1175, 2931
AcsI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2132, 2262, 2482, 2640
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 2 cut(s) 1991, 2979
AfaI GTAC 7 cut(s) 98, 320, 506, 1108, 2497, 2922, 3070
AfiI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2075, 2800, 3065
AflII CTTAAG 1 cut(s) 1129
AflIII ACRYGT 1 cut(s) 739
AjnI CCWGG 4 cut(s) 275, 1458, 1506, 1672
AjuI GAANNNNNNNTTGG 6 cut(s) 251, 283, 1325, 1357, 1647, 1679
Alw21I GWGCWC 4 cut(s) 329, 570, 1539, 2601
Alw26I GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2616
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 1538
AoxI GGCC 7 cut(s) 429, 1175, 1311, 2032, 2226, 2931, 2955
ApeKI GCWGC 9 cut(s) 335, 598, 838, 1319, 1848, 1851, 2168, 2540, 2681
ApoI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2132, 2262, 2482, 2640
Asp700I GAANNNNTTC 1 cut(s) 924
Asp718I GGTACC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 1390
AspLEI GCGC 3 cut(s) 152, 795, 797
AspS9I GGNCC 5 cut(s) 231, 1504, 1967, 2226, 2338
AsuHPI GGTGA 3 cut(s) 155, 1679, 2606
AsuII TTCGAA 1 cut(s) 2126
AvaI CYCGRG 1 cut(s) 1538
AvaII GGWCC 4 cut(s) 231, 1504, 1967, 2338
AvrII CCTAGG 1 cut(s) 1390
BalI TGGCCA 2 cut(s) 1177, 2933
BamHI GGATCC 1 cut(s) 1206
BanI GGYRCC 2 cut(s) 96, 149
BanII GRGCYC 3 cut(s) 329, 1539, 2601
BauI CACGAG 1 cut(s) 1938
BbsI GAAGAC 2 cut(s) 10, 254
Bbv12I GWGCWC 4 cut(s) 329, 570, 1539, 2601
BbvI GCAGC 9 cut(s) 322, 610, 825, 1306, 1835, 1863, 2155, 2527, 2668
BccI CCATC 8 cut(s) 140, 216, 481, 932, 1196, 1978, 2804, 2984
BcgI CGANNNNNNTGC 2 cut(s) 2867, 2901
BciT130I CCWGG 4 cut(s) 277, 1460, 1508, 1674
BciVI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BcoDI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2616
BfaI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1925
BfmI CTRYAG 4 cut(s) 1150, 1849, 2709, 2940
BfoI RGCGCY 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 1129
BfuAI ACCTGC 1 cut(s) 1951
BfuI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BglI GCCNNNNNGGC 1 cut(s) 1174
BglII AGATCT 2 cut(s) 892, 1420
BlnI CCTAGG 1 cut(s) 1390
Bme1390I CCNGG 4 cut(s) 277, 1460, 1508, 1674
Bme18I GGWCC 4 cut(s) 231, 1504, 1967, 2338
BmeT110I CYCGRG 1 cut(s) 1538
BmgT120I GGNCC 5 cut(s) 231, 1504, 1967, 2226, 2338
BmrFI CCNGG 4 cut(s) 277, 1460, 1508, 1674
BmsI GCATC 7 cut(s) 45, 52, 1134, 2180, 2299, 2764, 2787
BpiI GAAGAC 2 cut(s) 10, 254
BplI GAGNNNNNCTC 2 cut(s) 2729, 2761
BpmI CTGGAG 2 cut(s) 698, 1553
Bpu10I CCTNAGC 2 cut(s) 723, 2430
Bpu14I TTCGAA 1 cut(s) 2126
BpuEI CTTGAG 2 cut(s) 1286, 1590
BsaBI GATNNNNATC 3 cut(s) 443, 942, 1419
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2070, 2559
BsaXI ACNNNNNCTCC 2 cut(s) 3033, 3063
Bsc4I CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2075, 2800, 3065
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 2857
Bse8I GATNNNNATC 3 cut(s) 443, 942, 1419
BseBI CCWGG 4 cut(s) 277, 1460, 1508, 1674
BseDI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2070, 2559
BseGI GGATG 7 cut(s) 60, 393, 1579, 2171, 2659, 2815, 2995
BseJI GATNNNNATC 3 cut(s) 443, 942, 1419
BseLI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2075, 2800, 3065
BseMI GCAATG 1 cut(s) 2857
BseMII CTCAG 8 cut(s) 330, 342, 737, 1352, 1653, 2190, 2274, 2536
BseNI ACTGG 1 cut(s) 220
BsePI GCGCGC 1 cut(s) 793
BseRI GAGGAG 2 cut(s) 1781, 2842
BseXI GCAGC 9 cut(s) 322, 610, 825, 1306, 1835, 1863, 2155, 2527, 2668
BseYI CCCAGC 2 cut(s) 1624, 1854
BsgI GTGCAG 1 cut(s) 2742
Bsh1236I CGCG 2 cut(s) 795, 2838
BshFI GGCC 7 cut(s) 431, 1177, 1313, 2034, 2228, 2933, 2957
BshNI GGYRCC 2 cut(s) 96, 149
BsiHKAI GWGCWC 4 cut(s) 329, 570, 1539, 2601
BsiHKCI CYCGRG 1 cut(s) 1538
BsiSI CCGG 1 cut(s) 2801
BslFI GGGAC 1 cut(s) 1980
BslI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2075, 2800, 3065
BsmAI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2616
BsmFI GGGAC 1 cut(s) 1980
BsmI GAATGC 2 cut(s) 2064, 2975
BsnI GGCC 7 cut(s) 431, 1177, 1313, 2034, 2228, 2933, 2957
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 1538
Bsp119I TTCGAA 1 cut(s) 2126
Bsp1286I GDGCHC 4 cut(s) 329, 570, 1539, 2601
Bsp19I CCATGG 3 cut(s) 1172, 1178, 2559
BspACI CCGC 8 cut(s) 205, 951, 1096, 1838, 2116, 2617, 2730, 2888
BspANI GGCC 7 cut(s) 431, 1177, 1313, 2034, 2228, 2933, 2957
BspCNI CTCAG 8 cut(s) 331, 341, 736, 1351, 1652, 2189, 2275, 2535
BspFNI CGCG 2 cut(s) 795, 2838
BspHI TCATGA 2 cut(s) 2037, 2511
BspMAI CTGCAG 3 cut(s) 1154, 1853, 2944
BspMI ACCTGC 1 cut(s) 1951
BspT104I TTCGAA 1 cut(s) 2126
BspT107I GGYRCC 2 cut(s) 96, 149
BspTI CTTAAG 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 2857
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2070, 2559
BssHII GCGCGC 1 cut(s) 793
BssNAI GTATAC 1 cut(s) 1633
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 1938
BssT1I CCWWGG 5 cut(s) 1172, 1178, 1390, 2070, 2559
Bst1107I GTATAC 1 cut(s) 1633
Bst2BI CACGAG 1 cut(s) 1938
Bst2UI CCWGG 4 cut(s) 277, 1460, 1508, 1674
Bst4CI ACNGT 7 cut(s) 733, 1252, 1354, 1385, 1590, 1753, 2713
Bst6I CTCTTC 4 cut(s) 254, 338, 1875, 2711
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 1129
BstAPI GCANNNNNTGC 2 cut(s) 1144, 2168
BstBI TTCGAA 1 cut(s) 2126
BstC8I GCNNGC 9 cut(s) 301, 795, 1003, 1007, 1563, 1894, 2116, 2538, 2779
BstDSI CCRYGG 3 cut(s) 1172, 1178, 2559
BstENI CCTNNNNNAGG 1 cut(s) 3063
BstF5I GGATG 7 cut(s) 60, 393, 1579, 2171, 2659, 2815, 2995
BstFNI CGCG 2 cut(s) 795, 2838
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 152, 795, 797
BstMAI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2616
BstNI CCWGG 4 cut(s) 277, 1460, 1508, 1674
BstNSI RCATGY 4 cut(s) 743, 1066, 1408, 2921
BstSCI CCNGG 4 cut(s) 275, 1458, 1506, 1672
BstSFI CTRYAG 4 cut(s) 1150, 1849, 2709, 2940
BstUI CGCG 2 cut(s) 795, 2838
BstV1I GCAGC 9 cut(s) 322, 610, 825, 1306, 1835, 1863, 2155, 2527, 2668
BstV2I GAAGAC 2 cut(s) 10, 254
BstX2I RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2139
BstXI CCANNNNNNTGG 5 cut(s) 227, 1179, 1466, 1705, 2258
BstYI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2139
BstZ17I GTATAC 1 cut(s) 1633
BsuI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BsuRI GGCC 7 cut(s) 431, 1177, 1313, 2034, 2228, 2933, 2957
BtgI CCRYGG 3 cut(s) 1172, 1178, 2559
BtsCI GGATG 7 cut(s) 60, 393, 1579, 2171, 2659, 2815, 2995
BtsI GCAGTG 3 cut(s) 1147, 1551, 2747
BtsIMutI CAGTG 9 cut(s) 336, 507, 1147, 1551, 1586, 1749, 1882, 2718, 2747
BveI ACCTGC 1 cut(s) 1951
Cac8I GCNNGC 9 cut(s) 301, 795, 1003, 1007, 1563, 1894, 2116, 2538, 2779
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 2 cut(s) 2037, 2511
CfoI GCGC 3 cut(s) 152, 795, 797
Cfr13I GGNCC 5 cut(s) 231, 1504, 1967, 2226, 2338
Csp6I GTAC 7 cut(s) 97, 319, 505, 1107, 2496, 2921, 3069
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviQI GTAC 7 cut(s) 97, 319, 505, 1107, 2496, 2921, 3069
DinI GGCGCC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 2 cut(s) 1991, 2979
EaeI YGGCCR 2 cut(s) 1175, 2931
Eam1104I CTCTTC 4 cut(s) 254, 338, 1875, 2711
EarI CTCTTC 4 cut(s) 254, 338, 1875, 2711
EciI GGCGGA 2 cut(s) 194, 966
Ecl136II GAGCTC 3 cut(s) 327, 1537, 2599
Eco130I CCWWGG 5 cut(s) 1172, 1178, 1390, 2070, 2559
Eco24I GRGCYC 3 cut(s) 329, 1539, 2601
Eco31I GGTCTC 1 cut(s) 523
Eco32I GATATC 2 cut(s) 2243, 2791
Eco47I GGWCC 4 cut(s) 231, 1504, 1967, 2338
Eco53kI GAGCTC 3 cut(s) 327, 1537, 2599
Eco88I CYCGRG 1 cut(s) 1538
EcoICRI GAGCTC 3 cut(s) 327, 1537, 2599
EcoNI CCTNNNNNAGG 1 cut(s) 3063
EcoRI GAATTC 4 cut(s) 924, 1711, 2262, 2482
EcoRII CCWGG 4 cut(s) 275, 1458, 1506, 1672
EcoRV GATATC 2 cut(s) 2243, 2791
EcoT14I CCWWGG 5 cut(s) 1172, 1178, 1390, 2070, 2559
EcoT38I GRGCYC 3 cut(s) 329, 1539, 2601
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 5 cut(s) 1172, 1178, 1390, 2070, 2559
FalI AAGNNNNNCTT 8 cut(s) 251, 283, 342, 374, 505, 537, 803, 835
FaqI GGGAC 1 cut(s) 1980
FauI CCCGC 1 cut(s) 2123
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 2 cut(s) 882, 1632
FokI GGATG 7 cut(s) 67, 400, 1586, 2158, 2666, 2822, 3002
FriOI GRGCYC 3 cut(s) 329, 1539, 2601
FspBI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1925
GlaI GCGC 3 cut(s) 151, 794, 796
GsaI CCCAGC 2 cut(s) 1628, 1858
GsuI CTGGAG 2 cut(s) 698, 1553
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 7 cut(s) 431, 1177, 1313, 2034, 2228, 2933, 2957
HapII CCGG 1 cut(s) 2801
HhaI GCGC 3 cut(s) 152, 795, 797
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 3 cut(s) 150, 793, 795
HinP1I GCGC 3 cut(s) 150, 793, 795
HindIII AAGCTT 1 cut(s) 2473
HpaII CCGG 1 cut(s) 2801
HphI GGTGA 3 cut(s) 155, 1679, 2606
Hpy166II GTNNAC 5 cut(s) 507, 883, 1633, 2088, 2668
Hpy188I TCNGA 9 cut(s) 246, 577, 1051, 1084, 1451, 1642, 2179, 2284, 2421
Hpy8I GTNNAC 5 cut(s) 507, 883, 1633, 2088, 2668
Hpy99I CGWCG 1 cut(s) 1912
HpyAV CCTTC 5 cut(s) 763, 909, 1671, 1853, 2450
HpyCH4III ACNGT 7 cut(s) 733, 1252, 1354, 1385, 1590, 1753, 2713
HpyCH4IV ACGT 3 cut(s) 1788, 2084, 3043
HpySE526I ACGT 3 cut(s) 1788, 2084, 3043
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 3 cut(s) 150, 793, 795
KasI GGCGCC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 100
LmnI GCTCC 9 cut(s) 573, 679, 712, 832, 1051, 1534, 1621, 1768, 2604
Lsp1109I GCAGC 9 cut(s) 322, 610, 825, 1306, 1835, 1863, 2155, 2527, 2668
LweI GCATC 7 cut(s) 45, 52, 1134, 2180, 2299, 2764, 2787
MaeI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1925
MaeII ACGT 3 cut(s) 1788, 2084, 3043
MaeIII GTNAC 6 cut(s) 969, 984, 1429, 1584, 1747, 2570
MfeI CAATTG 2 cut(s) 480, 1200
MflI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2139
MhlI GDGCHC 4 cut(s) 329, 570, 1539, 2601
MlsI TGGCCA 2 cut(s) 1177, 2933
MluNI TGGCCA 2 cut(s) 1177, 2933
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 3 cut(s) 349, 977, 1772
MmeI TCCRAC 2 cut(s) 269, 1894
Mox20I TGGCCA 2 cut(s) 1177, 2933
MroXI GAANNNNTTC 1 cut(s) 924
MscI TGGCCA 2 cut(s) 1177, 2933
MseI TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2136, 2402, 2412
MslI CAYNNNNRTG 3 cut(s) 654, 1177, 1409
Msp20I TGGCCA 2 cut(s) 1177, 2933
MspA1I CMGCKG 3 cut(s) 1854, 2118, 2730
MspCI CTTAAG 1 cut(s) 1129
MspI CCGG 1 cut(s) 2801
MspR9I CCNGG 4 cut(s) 277, 1460, 1508, 1674
MunI CAATTG 2 cut(s) 480, 1200
Mva1269I GAATGC 2 cut(s) 2064, 2975
MvaI CCWGG 4 cut(s) 277, 1460, 1508, 1674
MvnI CGCG 2 cut(s) 795, 2838
NarI GGCGCC 1 cut(s) 150
NcoI CCATGG 3 cut(s) 1172, 1178, 2559
NdeI CATATG 1 cut(s) 553
NmuCI GTSAC 3 cut(s) 969, 1584, 1747
NspI RCATGY 4 cut(s) 743, 1066, 1408, 2921
NspV TTCGAA 1 cut(s) 2126
PaeR7I CTCGAG 1 cut(s) 1538
PagI TCATGA 2 cut(s) 2037, 2511
PaqCI CACCTGC 1 cut(s) 1951
PasI CCCWGGG 1 cut(s) 1459
PauI GCGCGC 1 cut(s) 793
PciI ACATGT 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 1904
PctI GAATGC 2 cut(s) 2064, 2975
PdmI GAANNNNTTC 1 cut(s) 924
PflMI CCANNNNNTGG 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 1672
PleI GAGTC 3 cut(s) 349, 976, 1772
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 3 cut(s) 349, 976, 1772
PscI ACATGT 1 cut(s) 739
PsiI TTATAA 1 cut(s) 1490
Psp124BI GAGCTC 3 cut(s) 329, 1539, 2601
Psp6I CCWGG 4 cut(s) 275, 1458, 1506, 1672
PspFI CCCAGC 2 cut(s) 1624, 1854
PspGI CCWGG 4 cut(s) 275, 1458, 1506, 1672
PspPI GGNCC 5 cut(s) 231, 1504, 1967, 2226, 2338
PspXI VCTCGAGB 1 cut(s) 1538
PstI CTGCAG 3 cut(s) 1154, 1853, 2944
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2139
PteI GCGCGC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 1854
RsaI GTAC 7 cut(s) 98, 320, 506, 1108, 2497, 2922, 3070
RsaNI GTAC 7 cut(s) 97, 319, 505, 1107, 2496, 2921, 3069
RseI CAYNNNNRTG 3 cut(s) 654, 1177, 1409
SacI GAGCTC 3 cut(s) 329, 1539, 2601
SaqAI TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2136, 2402, 2412
Sau96I GGNCC 5 cut(s) 231, 1504, 1967, 2226, 2338
SchI GAGTC 3 cut(s) 349, 977, 1772
ScrFI CCNGG 4 cut(s) 277, 1460, 1508, 1674
SduI GDGCHC 4 cut(s) 329, 570, 1539, 2601
SfaNI GCATC 7 cut(s) 45, 52, 1134, 2180, 2299, 2764, 2787
SfcI CTRYAG 4 cut(s) 1150, 1849, 2709, 2940
SfoI GGCGCC 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 1538
SfuI TTCGAA 1 cut(s) 2126
SinI GGWCC 4 cut(s) 231, 1504, 1967, 2338
SlaI CTCGAG 1 cut(s) 1538
SmiMI CAYNNNNRTG 3 cut(s) 654, 1177, 1409
SmlI CTYRAG 4 cut(s) 1129, 1301, 1538, 1605
SmoI CTYRAG 4 cut(s) 1129, 1301, 1538, 1605
SsiI CCGC 8 cut(s) 205, 951, 1096, 1838, 2116, 2617, 2730, 2888
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 1 cut(s) 2905
SspMI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1925
SstI GAGCTC 3 cut(s) 329, 1539, 2601
StyD4I CCNGG 4 cut(s) 275, 1458, 1506, 1672
StyI CCWWGG 5 cut(s) 1172, 1178, 1390, 2070, 2559
TaaI ACNGT 7 cut(s) 733, 1252, 1354, 1385, 1590, 1753, 2713
TaiI ACGT 3 cut(s) 1791, 2087, 3046
TauI GCSGC 1 cut(s) 1099
Tru1I TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2136, 2402, 2412
Tru9I TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2136, 2402, 2412
TscAI CASTG 9 cut(s) 336, 514, 1154, 1551, 1593, 1756, 1882, 2718, 2754
TseFI GTSAC 3 cut(s) 969, 1584, 1747
TseI GCWGC 9 cut(s) 335, 598, 838, 1319, 1848, 1851, 2168, 2540, 2681
Tsp45I GTSAC 3 cut(s) 969, 1584, 1747
TspGWI ACGGA 2 cut(s) 1996, 2602
TspRI CASTG 9 cut(s) 336, 514, 1154, 1551, 1593, 1756, 1882, 2718, 2754
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 1129
VpaK11BI GGWCC 4 cut(s) 231, 1504, 1967, 2338
XagI CCTNNNNNAGG 1 cut(s) 3063
XapI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2132, 2262, 2482, 2640
XbaI TCTAGA 2 cut(s) 1423, 1924
XceI RCATGY 4 cut(s) 743, 1066, 1408, 2921
XcmI CCANNNNNNNNNTGG 1 cut(s) 1176
XhoI CTCGAG 1 cut(s) 1538
XmaJI CCTAGG 1 cut(s) 1390
XmiI GTMKAC 2 cut(s) 882, 1632
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1925
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.