Rroxscaffold_5G00371820

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014276
Physical Location & Seq
Reverse (-)
53349613 .. 53354891
5279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00371820.1

Sequence Viewer

Length: 2997 bp
ATGAGTTTGCTTCATGTCTTCGGGTTCGGTTTAAAAGTGGGGCATCTACTTTGGATGCTATGTTGCTGGATTGTATCTGTGATTTCCATGAATTGGTACCTTAATGGTGGAATTATGGACACCAAGAGTGGTAGTTTGCTTGGTGATGGCGCCAATATGTGCCTCAAATTGTGGGAGAAGATCCCATTGAACATTACTAAGATCCGCCATCATTACTGCCAGTATATTGGGTCCAAGAGAGTTCGGAAGACTTGGTGGAAGAGGCTCTTGGTTTCCTGGGTGGTTGGTTGGACTATTGCTTGCTTTTGGATCTTCTGGTACATGAGCTCAGTGGCTAGTGAGAAGAGGAAGGAGACTCTTACGAGCATGTGTGATGAGAGAGCAAGGATGTTGCAGGATCAGTTTAATGTGAGCATGAACCATATTCAGGCCATGTCGATTCTGATCTCGACATTCCACCACGGCAAGTATCCGTCTGCAATTGACCAGAGAACTTTTGCGAGGTACACTGAAAGAACTGCTTTTGAGAGACCTCTTACAAGTGGCGTGGCATATGCTGTAAGGGTGCTCCACTCGGAGAAAGAACAATTTGAGAAGCAGCAAGGCTGGACTATCAAGAGAATGGATACCCTTGAACACAACCAAGTCCATAAGAATGACTATACCCCAGAACTGCTGGAGCCACCCCCAATTCAGGAAGAATATGCTCCTGTCATATTTGCTCAGGATACCGTTGCACATGTCATTTCTTTTGATATGCTGTCTGGGAAGAGAGATCTACCTTCAAATGCAACTCCAAATGAAAGAATTCAAGCAACCGATGGGTATCTAGGCGGAATCTTTCATATTGAGTCACTTGTGGAGAAGTTACTTCAACAACTTGCAAGCAAGCAAACTATCCTTGTCAATGTGTATGATACTACCAATCATTCGGAGCCAATCAGTATGTATGGTTCAAATGTTTCTGATGATGGATTGCGGCATATCAGTACCTTAAATTTTGGAGATCCCTTGAGGAAGCATGAGATGCACTGCAGATTCAAACATAAGCCACCGTGGGCGTGGTTAGCCATCACAACTTCAATTGGGATCCTTGTGATTGCGTTGCTTGTTGGGCATATTTTTCATGCAACTGTAAATAGGATTGCCAAAGTGGAAGATGATTTCCATAAAATGAGCGATCTCAAGAAACAGGCCGAAGCAGCTGATATTGCCAAATCTCAGTTCCTTGCAACTGTATCCCATGAGATTAGAACCCCAATGAACGGTGTCCTAGGTATGTTGCACATGCTTATGGACACAGATCTAGATGTAACTCAACAAGATTATGTCAGAACTGCCCAGGGTAGTGGAAAAGCCCTAGTCTCACTTATAAATGAGGTCTTGGACCAGGCAAAAATTGAATCTGGTAAGCTGGAGCTCGAGGCAGTGCGTTTTGATCTGCGAGCAATTTTGGATGATGTTTTGTCACTGTTTTCTGGGAAGTCTCAAGACAAAGGAGTGGAGCTGGGAGTATACATCTCAGATCAGGTTCCTGAAATGCTTATTGGTGATCCTGGAAGGTTTCGGCAAATTATTACCAATCTCATGGGGAATTCGATCAAATTCACAGAGAAAGGACACATCTTTGTCACTGTCCATTTGGTTGAGGAGCTGATCGACTCGATAGACGTTGAGACTGAATCATCATCAAAAAACACTTTGAGTGGGTTCCCTGTTGCAGATAAACGCTGCAGCTGGGGAGGATTTAGGGGTTTCAGTGAAGAGGGATCTTCAAGCTCGTTCTCATCATCGTCTGATGTCATCAATCTTATTGTGTCTGTTGAGGACACAGGGGTTGGAATCCCTCTAGAAGCCCAATCTCGTGTTTTCACTCCTTTTATGCAGGTGGGACCATCTATCTCACGGACACATGGTGGCACAGGAATTGGACTAAGCATAAGCAAGTGTTTAGTTGGCCTCATGAGAGGGGAGATTGGTTTTGTGAGCATTCCCAAGATTGGTTCCACATTTACATTTACCGCTGTTTTCGCCAAAGCCCGCTGTGATTCGAATGAATTTAAGATCCAGCAAATCAACAGCCAAGCAAATGCTGCATCCTCAGACTTTCATGGCATGACAGCATTGGTTGTGGATCACAGACCTGTGAGGGCCAAGATGTCAAGATATCATATCCAAAGGCTTGGAATTCGTGTTGAAATCGCTTCTGAGTTGCATCAGGCTTTGTCTTGCATATGCTCTGGGAATGCAACTATAAATATGGTCCTTGTTGAACAGGAGGTTTGGGATAATGATTCAGGCAGTTCAGCTCTCTTTATTGATAACTTAAAGAAACTTAAATGTCCGGTTCCTCCTAAGCTGTTCCTTCTTGCCAATTCTAAAAGCAGTTGCAGAACAAGCTTTGTGAATTCAGGTGTCTGCACGCCAAGTATTATCATGAAGCCTCTCAGGGCAAGTATGCTTGCCGCCTCACTACAAAGAGCCATGGGAATTGGTAACAAGGGTAATACACGGAATGGTGAGCTCCCAAGTTTGTCTCTCCGCAATCTTCTACTTGGAAGAAAAATTCTTATTGTGGATGATAATAAAGTGAACCTCATAGTAGCTGCTGGTGCTTTGAAAAAGTATGGGGCTACAGTGAAGAGTGCAGACAGCGGTAACGAGGCAATCTTACTGCTTACACCACCCCATAGTTTTGACGCCTGCTTCATGGATATCCAGATGCCGGAAATGGATGGTTTTGAAGCTACAAGGAGAATACGTGACATAGAACGCAATGTCAGCAATAATATTCAACATGGCGAGGTTTCTGCAGAGGACTATGGCAATATTTTATCATGGCATGTACCCATTCTTGCCATGACTGCAGATGTTATTCAGGCCACCCATGAGGAATGCACAAGGTGTGGAATGGATGGATACGTTTCTAAACCATTCGAAGCTGAACAGCTTTATCGAGAAGTTTCACGTTTTCTCCAATCTCCTGCAAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

998

Amino Acids

111.09

Weight (kDa)

6.92

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 160 - 258 1.4e-12 CHASE domain
HisKA PF00512 405 - 470 4.2e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 602 - 674 3.2e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 700 - 830 9.7e-44 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 856 - 926 3.9e-14 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27320
fragaria_vesca FvH4_4g23590 FvH4_4g23590 FvH4_4g23590 FvH4_4g23590
malus_domestica MD13G1120900.v1.1 MD16G1068400.v1.1 MD16G1120900.v1.1
prunus_persica Prupe.1G224300_v2.0.a1
pyrus_communis pycom13g10520
rosa_chinensis RchiOBHm_Chr4g0430011
rosa_laevigata RLG00000007014
rosa_roxburghii Rroxscaffold_5G00371820
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG302900 Rh4CG318400
rosa_wichuraiana Rw4G025680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1373
AarI CACCTGC 1 cut(s) 1876
Acc36I ACCTGC 1 cut(s) 1876
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 149
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 1 cut(s) 1515
AciI CCGC 8 cut(s) 205, 834, 979, 2022, 2041, 2466, 2542, 2655
AcsI RAATTY 8 cut(s) 807, 997, 1594, 1604, 2057, 2187, 2407, 2565
AcyI GRCGYC 2 cut(s) 150, 2700
AdeI CACNNNGTG 2 cut(s) 1916, 2904
AfaI GTAC 5 cut(s) 98, 320, 506, 991, 2847
AfiI CCNNNNNNNGG 7 cut(s) 93, 427, 694, 1265, 2000, 2725, 2990
AflIII ACRYGT 1 cut(s) 739
AjnI CCWGG 4 cut(s) 275, 1341, 1389, 1555
AjuI GAANNNNNNNTTGG 6 cut(s) 251, 283, 1208, 1240, 1530, 1562
Alw21I GWGCWC 4 cut(s) 329, 570, 1422, 2526
Alw26I GTCTC 6 cut(s) 347, 523, 1369, 1491, 1670, 2541
Ama87I CYCGRG 1 cut(s) 1421
AoxI GGCC 5 cut(s) 429, 1194, 1957, 2151, 2880
ApeKI GCWGC 6 cut(s) 598, 1202, 1731, 1734, 2093, 2606
ApoI RAATTY 8 cut(s) 807, 997, 1594, 1604, 2057, 2187, 2407, 2565
Asp700I GAANNNNTTC 1 cut(s) 807
Asp718I GGTACC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 1273
AspLEI GCGC 1 cut(s) 152
AspS9I GGNCC 5 cut(s) 231, 1387, 1892, 2151, 2263
AsuHPI GGTGA 3 cut(s) 155, 1562, 2531
AsuII TTCGAA 2 cut(s) 2051, 2937
AvaI CYCGRG 1 cut(s) 1421
AvaII GGWCC 4 cut(s) 231, 1387, 1892, 2263
AvrII CCTAGG 1 cut(s) 1273
BamHI GGATCC 1 cut(s) 1089
BanI GGYRCC 2 cut(s) 96, 149
BanII GRGCYC 3 cut(s) 329, 1422, 2526
BauI CACGAG 1 cut(s) 1863
BbsI GAAGAC 2 cut(s) 10, 254
Bbv12I GWGCWC 4 cut(s) 329, 570, 1422, 2526
BbvI GCAGC 6 cut(s) 610, 1214, 1718, 1746, 2080, 2593
BccI CCATC 8 cut(s) 140, 216, 815, 965, 1079, 1903, 2729, 2909
BceAI ACGGC 1 cut(s) 478
BcgI CGANNNNNNTGC 2 cut(s) 2792, 2826
BciT130I CCWGG 4 cut(s) 277, 1343, 1391, 1557
BciVI GTATCC 5 cut(s) 480, 619, 721, 1249, 2912
BcoDI GTCTC 6 cut(s) 347, 523, 1369, 1491, 1670, 2541
BfaI CTAG 6 cut(s) 336, 830, 1274, 1307, 1361, 1850
BfmI CTRYAG 5 cut(s) 1033, 1732, 2634, 2811, 2865
BfoI RGCGCY 1 cut(s) 153
BfuAI ACCTGC 1 cut(s) 1876
BfuI GTATCC 5 cut(s) 480, 619, 721, 1249, 2912
BglII AGATCT 2 cut(s) 775, 1303
BisI GCNGC 8 cut(s) 599, 980, 1203, 1732, 1735, 2094, 2466, 2607
BlnI CCTAGG 1 cut(s) 1273
BlsI GCNGC 8 cut(s) 600, 981, 1204, 1733, 1736, 2095, 2467, 2608
Bme1390I CCNGG 4 cut(s) 277, 1343, 1391, 1557
Bme18I GGWCC 4 cut(s) 231, 1387, 1892, 2263
BmeT110I CYCGRG 1 cut(s) 1421
BmgT120I GGNCC 5 cut(s) 231, 1387, 1892, 2151, 2263
BmrFI CCNGG 4 cut(s) 277, 1343, 1391, 1557
BmsI GCATC 6 cut(s) 45, 52, 1017, 2105, 2224, 2712
BpiI GAAGAC 2 cut(s) 10, 254
BpmI CTGGAG 2 cut(s) 698, 1436
Bpu10I CCTNAGC 2 cut(s) 723, 2355
Bpu14I TTCGAA 2 cut(s) 2051, 2937
BpuEI CTTGAG 3 cut(s) 1033, 1169, 1473
BsaAI YACGTR 1 cut(s) 2762
BsaBI GATNNNNATC 2 cut(s) 443, 825
BsaHI GRCGYC 2 cut(s) 150, 2700
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 7 cut(s) 276, 460, 1055, 1273, 1341, 1342, 2484
BsaWI WCCGGW 1 cut(s) 2344
BsaXI ACNNNNNCTCC 4 cut(s) 2746, 2776, 2958, 2988
Bsc4I CCNNNNNNNGG 7 cut(s) 93, 427, 694, 1265, 2000, 2725, 2990
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 2782
Bse8I GATNNNNATC 2 cut(s) 443, 825
BseBI CCWGG 4 cut(s) 277, 1343, 1391, 1557
BseDI CCNNGG 7 cut(s) 276, 460, 1055, 1273, 1341, 1342, 2484
BseGI GGATG 7 cut(s) 60, 393, 1462, 2096, 2584, 2740, 2920
BseJI GATNNNNATC 2 cut(s) 443, 825
BseLI CCNNNNNNNGG 7 cut(s) 93, 427, 694, 1265, 2000, 2725, 2990
BseMI GCAATG 1 cut(s) 2782
BseMII CTCAG 7 cut(s) 342, 737, 1235, 1536, 2115, 2199, 2461
BseNI ACTGG 1 cut(s) 220
BseRI GAGGAG 1 cut(s) 1664
BseXI GCAGC 6 cut(s) 610, 1214, 1718, 1746, 2080, 2593
BseYI CCCAGC 2 cut(s) 1507, 1737
BsgI GTGCAG 2 cut(s) 2404, 2667
BshFI GGCC 5 cut(s) 431, 1196, 1959, 2153, 2882
BshNI GGYRCC 2 cut(s) 96, 149
BsiHKAI GWGCWC 4 cut(s) 329, 570, 1422, 2526
BsiHKCI CYCGRG 1 cut(s) 1421
BsiSI CCGG 2 cut(s) 2345, 2726
BslFI GGGAC 1 cut(s) 1905
BslI CCNNNNNNNGG 7 cut(s) 93, 427, 694, 1265, 2000, 2725, 2990
BsmAI GTCTC 6 cut(s) 347, 523, 1369, 1491, 1670, 2541
BsmFI GGGAC 1 cut(s) 1905
BsmI GAATGC 3 cut(s) 1989, 2251, 2900
BsnI GGCC 5 cut(s) 431, 1196, 1959, 2153, 2882
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 1421
Bsp119I TTCGAA 2 cut(s) 2051, 2937
Bsp1286I GDGCHC 4 cut(s) 329, 570, 1422, 2526
Bsp19I CCATGG 1 cut(s) 2484
BspACI CCGC 8 cut(s) 205, 834, 979, 2022, 2041, 2466, 2542, 2655
BspANI GGCC 5 cut(s) 431, 1196, 1959, 2153, 2882
BspCNI CTCAG 7 cut(s) 341, 736, 1234, 1535, 2114, 2200, 2460
BspHI TCATGA 2 cut(s) 1962, 2436
BspMAI CTGCAG 4 cut(s) 1037, 1736, 2815, 2869
BspMI ACCTGC 1 cut(s) 1876
BspT104I TTCGAA 2 cut(s) 2051, 2937
BspT107I GGYRCC 2 cut(s) 96, 149
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 2782
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 7 cut(s) 276, 460, 1055, 1273, 1341, 1342, 2484
BssNAI GTATAC 1 cut(s) 1516
BssNI GRCGYC 2 cut(s) 150, 2700
BssSI CACGAG 1 cut(s) 1863
BssT1I CCWWGG 2 cut(s) 1273, 2484
Bst1107I GTATAC 1 cut(s) 1516
Bst2BI CACGAG 1 cut(s) 1863
Bst2UI CCWGG 4 cut(s) 277, 1343, 1391, 1557
Bst4CI ACNGT 8 cut(s) 733, 1056, 1135, 1237, 1268, 1473, 1636, 2638
Bst6I CTCTTC 5 cut(s) 254, 338, 764, 1758, 2636
BstACI GRCGYC 2 cut(s) 150, 2700
BstAPI GCANNNNNTGC 2 cut(s) 1027, 2093
BstBAI YACGTR 1 cut(s) 2762
BstBI TTCGAA 2 cut(s) 2051, 2937
BstC8I GCNNGC 8 cut(s) 301, 886, 890, 1446, 2041, 2423, 2463, 2704
BstDSI CCRYGG 3 cut(s) 460, 1055, 2484
BstENI CCTNNNNNAGG 1 cut(s) 2988
BstF5I GGATG 7 cut(s) 60, 393, 1462, 2096, 2584, 2740, 2920
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 1 cut(s) 152
BstMAI GTCTC 6 cut(s) 347, 523, 1369, 1491, 1670, 2541
BstNI CCWGG 4 cut(s) 277, 1343, 1391, 1557
BstNSI RCATGY 4 cut(s) 370, 743, 1291, 2846
BstSCI CCNGG 4 cut(s) 275, 1341, 1389, 1555
BstSFI CTRYAG 5 cut(s) 1033, 1732, 2634, 2811, 2865
BstV1I GCAGC 6 cut(s) 610, 1214, 1718, 1746, 2080, 2593
BstV2I GAAGAC 2 cut(s) 10, 254
BstX2I RGATCY 9 cut(s) 180, 201, 309, 775, 1006, 1089, 1303, 1769, 2064
BstXI CCANNNNNNTGG 4 cut(s) 227, 1349, 1588, 2183
BstYI RGATCY 9 cut(s) 180, 201, 309, 775, 1006, 1089, 1303, 1769, 2064
BstZ17I GTATAC 1 cut(s) 1516
BsuI GTATCC 5 cut(s) 480, 619, 721, 1249, 2912
BsuRI GGCC 5 cut(s) 431, 1196, 1959, 2153, 2882
BtgI CCRYGG 3 cut(s) 460, 1055, 2484
BtsCI GGATG 7 cut(s) 60, 393, 1462, 2096, 2584, 2740, 2920
BtsI GCAGTG 2 cut(s) 1030, 1434
BtsIMutI CAGTG 8 cut(s) 336, 507, 1030, 1434, 1469, 1632, 1765, 2643
BveI ACCTGC 1 cut(s) 1876
Cac8I GCNNGC 8 cut(s) 301, 886, 890, 1446, 2041, 2423, 2463, 2704
CciI TCATGA 2 cut(s) 1962, 2436
CfoI GCGC 1 cut(s) 152
Cfr13I GGNCC 5 cut(s) 231, 1387, 1892, 2151, 2263
CseI GACGC 1 cut(s) 2708
Csp6I GTAC 5 cut(s) 97, 319, 505, 990, 2846
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviQI GTAC 5 cut(s) 97, 319, 505, 990, 2846
DinI GGCGCC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 2 cut(s) 1916, 2904
Eam1104I CTCTTC 5 cut(s) 254, 338, 764, 1758, 2636
EarI CTCTTC 5 cut(s) 254, 338, 764, 1758, 2636
EciI GGCGGA 2 cut(s) 194, 849
Ecl136II GAGCTC 3 cut(s) 327, 1420, 2524
Eco130I CCWWGG 2 cut(s) 1273, 2484
Eco24I GRGCYC 3 cut(s) 329, 1422, 2526
Eco31I GGTCTC 1 cut(s) 523
Eco32I GATATC 2 cut(s) 2168, 2716
Eco47I GGWCC 4 cut(s) 231, 1387, 1892, 2263
Eco53kI GAGCTC 3 cut(s) 327, 1420, 2524
Eco88I CYCGRG 1 cut(s) 1421
EcoICRI GAGCTC 3 cut(s) 327, 1420, 2524
EcoNI CCTNNNNNAGG 1 cut(s) 2988
EcoRI GAATTC 4 cut(s) 807, 1594, 2187, 2407
EcoRII CCWGG 4 cut(s) 275, 1341, 1389, 1555
EcoRV GATATC 2 cut(s) 2168, 2716
EcoT14I CCWWGG 2 cut(s) 1273, 2484
EcoT38I GRGCYC 3 cut(s) 329, 1422, 2526
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 2 cut(s) 1273, 2484
FalI AAGNNNNNCTT 4 cut(s) 251, 283, 505, 537
FaqI GGGAC 1 cut(s) 1905
FauI CCCGC 1 cut(s) 2048
FauNDI CATATG 2 cut(s) 553, 2234
FblI GTMKAC 1 cut(s) 1515
Fnu4HI GCNGC 8 cut(s) 599, 980, 1203, 1732, 1735, 2094, 2466, 2607
FokI GGATG 7 cut(s) 67, 400, 1469, 2083, 2591, 2747, 2927
FriOI GRGCYC 3 cut(s) 329, 1422, 2526
Fsp4HI GCNGC 8 cut(s) 599, 980, 1203, 1732, 1735, 2094, 2466, 2607
FspBI CTAG 6 cut(s) 336, 830, 1274, 1307, 1361, 1850
GlaI GCGC 1 cut(s) 151
GluI GCNGC 8 cut(s) 599, 980, 1203, 1732, 1735, 2094, 2466, 2607
GsaI CCCAGC 2 cut(s) 1511, 1741
GsuI CTGGAG 2 cut(s) 698, 1436
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 5 cut(s) 431, 1196, 1959, 2153, 2882
HapII CCGG 2 cut(s) 2345, 2726
HgaI GACGC 1 cut(s) 2708
HhaI GCGC 1 cut(s) 152
Hin1I GRCGYC 2 cut(s) 150, 2700
Hin6I GCGC 1 cut(s) 150
HinP1I GCGC 1 cut(s) 150
HindIII AAGCTT 1 cut(s) 2398
HpaII CCGG 2 cut(s) 2345, 2726
HphI GGTGA 3 cut(s) 155, 1562, 2531
Hpy166II GTNNAC 3 cut(s) 507, 1516, 2593
Hpy8I GTNNAC 3 cut(s) 507, 1516, 2593
HpyAV CCTTC 4 cut(s) 343, 792, 1554, 2375
HpyCH4III ACNGT 8 cut(s) 733, 1056, 1135, 1237, 1268, 1473, 1636, 2638
HpyCH4IV ACGT 4 cut(s) 1671, 2761, 2922, 2968
HpySE526I ACGT 4 cut(s) 1671, 2761, 2922, 2968
Hsp92I GRCGYC 2 cut(s) 150, 2700
HspAI GCGC 1 cut(s) 150
KasI GGCGCC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 100
LmnI GCTCC 8 cut(s) 573, 679, 712, 934, 1417, 1504, 1651, 2529
Lsp1109I GCAGC 6 cut(s) 610, 1214, 1718, 1746, 2080, 2593
LweI GCATC 6 cut(s) 45, 52, 1017, 2105, 2224, 2712
MaeI CTAG 6 cut(s) 336, 830, 1274, 1307, 1361, 1850
MaeII ACGT 4 cut(s) 1671, 2761, 2922, 2968
MaeIII GTNAC 8 cut(s) 852, 867, 1312, 1467, 1630, 2495, 2657, 2762
MfeI CAATTG 2 cut(s) 480, 1083
MflI RGATCY 9 cut(s) 180, 201, 309, 775, 1006, 1089, 1303, 1769, 2064
MhlI GDGCHC 4 cut(s) 329, 570, 1422, 2526
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 3 cut(s) 349, 860, 1655
MmeI TCCRAC 2 cut(s) 269, 1819
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 7 cut(s) 32, 102, 405, 995, 2061, 2327, 2337
MslI CAYNNNNRTG 2 cut(s) 654, 1292
MspA1I CMGCKG 5 cut(s) 1205, 1737, 2024, 2043, 2655
MspI CCGG 2 cut(s) 2345, 2726
MspR9I CCNGG 4 cut(s) 277, 1343, 1391, 1557
MunI CAATTG 2 cut(s) 480, 1083
Mva1269I GAATGC 3 cut(s) 1989, 2251, 2900
MvaI CCWGG 4 cut(s) 277, 1343, 1391, 1557
NarI GGCGCC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 2484
NdeI CATATG 2 cut(s) 553, 2234
NmuCI GTSAC 4 cut(s) 852, 1467, 1630, 2762
NspI RCATGY 4 cut(s) 370, 743, 1291, 2846
NspV TTCGAA 2 cut(s) 2051, 2937
PaeR7I CTCGAG 1 cut(s) 1421
PagI TCATGA 2 cut(s) 1962, 2436
PaqCI CACCTGC 1 cut(s) 1876
PasI CCCWGGG 1 cut(s) 1342
PciI ACATGT 1 cut(s) 739
PctI GAATGC 3 cut(s) 1989, 2251, 2900
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 8 cut(s) 439, 837, 1038, 1403, 1682, 1842, 2048, 2294
PflMI CCANNNNNTGG 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 1555
PkrI GCNGC 8 cut(s) 600, 981, 1204, 1733, 1736, 2095, 2467, 2608
PleI GAGTC 3 cut(s) 349, 859, 1655
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 3 cut(s) 349, 859, 1655
Ppu21I YACGTR 1 cut(s) 2762
PscI ACATGT 1 cut(s) 739
PsiI TTATAA 1 cut(s) 1373
Psp124BI GAGCTC 3 cut(s) 329, 1422, 2526
Psp6I CCWGG 4 cut(s) 275, 1341, 1389, 1555
PspFI CCCAGC 2 cut(s) 1507, 1737
PspGI CCWGG 4 cut(s) 275, 1341, 1389, 1555
PspPI GGNCC 5 cut(s) 231, 1387, 1892, 2151, 2263
PspXI VCTCGAGB 1 cut(s) 1421
PsrI GAACNNNNNNTAC 2 cut(s) 937, 969
PstI CTGCAG 4 cut(s) 1037, 1736, 2815, 2869
PsuI RGATCY 9 cut(s) 180, 201, 309, 775, 1006, 1089, 1303, 1769, 2064
PvuII CAGCTG 2 cut(s) 1205, 1737
RsaI GTAC 5 cut(s) 98, 320, 506, 991, 2847
RsaNI GTAC 5 cut(s) 97, 319, 505, 990, 2846
RseI CAYNNNNRTG 2 cut(s) 654, 1292
SacI GAGCTC 3 cut(s) 329, 1422, 2526
SaqAI TTAA 7 cut(s) 32, 102, 405, 995, 2061, 2327, 2337
SatI GCNGC 8 cut(s) 599, 980, 1203, 1732, 1735, 2094, 2466, 2607
Sau96I GGNCC 5 cut(s) 231, 1387, 1892, 2151, 2263
SchI GAGTC 3 cut(s) 349, 860, 1655
ScrFI CCNGG 4 cut(s) 277, 1343, 1391, 1557
SduI GDGCHC 4 cut(s) 329, 570, 1422, 2526
SfaNI GCATC 6 cut(s) 45, 52, 1017, 2105, 2224, 2712
SfcI CTRYAG 5 cut(s) 1033, 1732, 2634, 2811, 2865
SfoI GGCGCC 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 1421
SfuI TTCGAA 2 cut(s) 2051, 2937
SinI GGWCC 4 cut(s) 231, 1387, 1892, 2263
SlaI CTCGAG 1 cut(s) 1421
SmiMI CAYNNNNRTG 2 cut(s) 654, 1292
SmlI CTYRAG 4 cut(s) 1012, 1184, 1421, 1488
SmoI CTYRAG 4 cut(s) 1012, 1184, 1421, 1488
SsiI CCGC 8 cut(s) 205, 834, 979, 2022, 2041, 2466, 2542, 2655
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 2 cut(s) 2791, 2830
SspMI CTAG 6 cut(s) 336, 830, 1274, 1307, 1361, 1850
SstI GAGCTC 3 cut(s) 329, 1422, 2526
StyD4I CCNGG 4 cut(s) 275, 1341, 1389, 1555
StyI CCWWGG 2 cut(s) 1273, 2484
TaaI ACNGT 8 cut(s) 733, 1056, 1135, 1237, 1268, 1473, 1636, 2638
TaiI ACGT 4 cut(s) 1674, 2764, 2925, 2971
TaqI TCGA 9 cut(s) 437, 449, 1422, 1598, 1659, 1664, 2051, 2937, 2956
TauI GCSGC 2 cut(s) 982, 2468
TfiI GAWTC 8 cut(s) 439, 837, 1038, 1403, 1682, 1842, 2048, 2294
Tru1I TTAA 7 cut(s) 32, 102, 405, 995, 2061, 2327, 2337
Tru9I TTAA 7 cut(s) 32, 102, 405, 995, 2061, 2327, 2337
TscAI CASTG 8 cut(s) 336, 514, 1037, 1434, 1476, 1639, 1765, 2643
TseFI GTSAC 4 cut(s) 852, 1467, 1630, 2762
TseI GCWGC 6 cut(s) 598, 1202, 1731, 1734, 2093, 2606
Tsp45I GTSAC 4 cut(s) 852, 1467, 1630, 2762
TspGWI ACGGA 3 cut(s) 462, 1921, 2527
TspRI CASTG 8 cut(s) 336, 514, 1037, 1434, 1476, 1639, 1765, 2643
Van91I CCANNNNNTGG 1 cut(s) 93
VpaK11BI GGWCC 4 cut(s) 231, 1387, 1892, 2263
XagI CCTNNNNNAGG 1 cut(s) 2988
XapI RAATTY 8 cut(s) 807, 997, 1594, 1604, 2057, 2187, 2407, 2565
XbaI TCTAGA 2 cut(s) 1306, 1849
XceI RCATGY 4 cut(s) 370, 743, 1291, 2846
XcmI CCANNNNNNNNNTGG 1 cut(s) 1059
XhoI CTCGAG 1 cut(s) 1421
XmaJI CCTAGG 1 cut(s) 1273
XmiI GTMKAC 1 cut(s) 1515
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 6 cut(s) 336, 830, 1274, 1307, 1361, 1850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.