RchiOBHm_Chr4g0430011

Histidine kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0014276
Physical Location & Seq
Reverse (-)
54676116 .. 54682827
6712 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ39877

Sequence Viewer

Length: 3120 bp
ATGAGTTTGCTTCATGTCTTCGGGTTCGGTTTAAAAGTGGGGCATCTACTTTGGATGCTATGTTGCTGGATTGTTTCTGTGATTTCCATGAATTGGTACCTTAATGGTGGAATTATGGACACCAAGAGTGGTAGTTTGCTTGGTGATGGCGCCAATATGTGCCTCAAATTGTGGGAGAAGATCCCATTGAACATTACTAAGATCCGCCATCATTACTACCAGTATATTGGGTCCAAGAGAGTTCAGAAGACTTGGTGGAAGAGGCTCTTGGTTTCCTGGGTGGTTGGTTGGACTATTGCTTGCTTTTGGATCTTCTGGTACATGAGCTCAGTGGCTGCTGAGAAGAGGAAAGAGACTCTTACGAGTATGTGTGATGAGAGAGCCAGGATGCTGCAGGATCAGTTTAATGTGAGCATGAACCATATTCAGGCCATGTCGATTCTCATCTCGACATTCCACCACGCCAAGTATCCATCTGCAATTGACCAGAGAACTTTTGCGAGGTACACTGAAAGAACTGCTTTTGAGAGACCTCTTACAAGTGGTGTGGCATATGCTGTAAGGGTGCTCCACTCGGAGAAAGAACAATTTGAGAAGCAGCAAGGCTGGACTATCAAGAGAATGGATACCCTCGAACACAACCAAGTCCATAAGAATGACTATACCCCAGAATTGCTGGAGCCACCCCCAATTCAGGAAGAATATGCTCCTGTCATATTTGCTCAGGATACCGTTGCACATGTCATTTCTTTCGATATGCTGTCTGGGAAGGAAGATCGAGATAATGTGTTGCGCGCAAGAGAATCAGGAAAGGGGGTCTTGACTGCTCCATTTCGGCTGCTTAAAACTAATAGGCTTGGAGTAATACTGACCTTTGCTGTCTACAAGAGAGATCTACCTTCAAATGCAACTCCAAATGAAAGAATTCAAGCAACCGATGGGTATCTAGGCGGAATCTTTCATATTGAGTCACTTGTGGAGAAGTTACTTCAACAACTTGCAAGCAAGCAAACTATCCTTGTCAATGTGTATGATACTACCAATCATTCGGAGCCAATCAGCATGTATGGTTCAAATGTTTCAGATGATGGATTGCGGCATATTAGTACCTTAAATTTCGGAGATCCCTTAAGGAAGCATGAGATGCACTGCAGATTCAAACATAAGCCACCGTGGCCGTGGTTAGCCATCACAACTTCAATTGGGATCCTTGTGATTGTGTTGCTTGTTGGGCATATTTTTCATGCAACTGTAAATAGGATTGCCAAAGTGGAAGATGATTTCCATAAAATGAGCGATCTCAAGAAACAGGCCGAAGCTGCTGATGTTGCCAAATCTCAGTTCCTTGCAACTGTATCCCATGAGATTAGAACCCCAATGAACGGTGTCCTAGGTATGTTGCACATGCTTATGGATACAGATCTAGATGTAACTCAACAAGATTATGTCAGAACTGCCCAGGGTAGTGGAAAAGCCCTAGTCTCACTTATAAATGAGGTCTTGGACCAGGCAAAAATTGAATCTGGTAAGCTGGAGCTCGAGGCAGTGCGTTTTGATCTGCGAGCAATTTTGGATGATGTTTTGTCACTGTTTTCTGGGAAGTCTCAAGAAAAAGGAGTGGAGCTGGGAGTATACATCTCAGATCAGGTTCCTGAAATGCTTATTGGTGATCCTGGAAGGTTTCGGCAAATTATTACCAATCTCATGGGGAATTCGATCAAATTCACAGAGAAAGGACACATCTTTGTCACTGTCCATTTGGTTGAGGAGCTGATTGACTCGATAGACGTTGAGACTGAATCATCATCGAAAAACACTTTGAGTGGGTTCCCTGTTGCGGATAAACGCTGCAGCTGGGAAGGATTTAGGGGTTTCAGTGAAGAGGGATCTGCAAGCTCGTTCTCATCGTCGTCTGATGTCATCAATCTTATTGTGTCTGTTGAGGACACAGGGGTTGGAATCCCTCTAGAAGCCCAATCTCGTGTTTTCACTCCTTTTATGCAGGTGGGACCATCTATCTCACGGACACATGGTGGCACAGGAATTGGACTAAGCATAAGCAAGTGTTTAGTTGGCCTCATGAGAGGGGAGATTGGTTTTGTGAGCATTCCCAAGGTTGGTTCCACATTTACATTTACCGCTGTTTTCGCCAAAGCCCGCTGTGATTCGAATGAATTTAAGATCCAGCAAATCAACAGCCAAGCAAATGCTGCATCCTCAGACTTTCATGGCATGACAGCATTGGTTGTGGATCACAGACCTGTGAGGGCCAAGATGTCAAGATATCATATCCAGAGGCTTGGAATTCGTGTTGAAGTCGCTTCTGAGTTGCATCAGGCTTTGTCTTGCATAAGCTCTGGGAATACAACTATAAATATGGTCCTTGTTGAACAGGAGGTTTGGGATAATGATTCATGCAGTTCAGCTCTCTTTATTGATAACTTAAAGAAACTTAAATGTCCGGTTCCTCCTAAGCTGTTCCTTCTTGCCAATTCTATAAGCAGTTGCAGAACAAGCTTTGTGAATTCAGGTGTCTGTACGCCAAGTATTATCATGAAGCCTCTCAGGGCAAGTATGCTTGCTGCCTCACTACAAAGAGCCATGGGAATTGGTAACAAGGGTAATACACGGAATGGTGAGCTCCCAAGTTTGTCTCTCCGCAATCTTCTACTTGGAAGAAAAATTCTTATTGTGGATGATAATAAAGTGAACCTCATAGTAGCTGCTGGTGCTTTGAAAAAGTATGGGGCTACAGTGAAGAGTGCAGACAGCGGTAAAGAGGCAATCTCACTGCTTACACCACCCCATAGTTTTGATGCCTGCTTCATGGATATCCAGATGCCGGAAATGGATGGTTTTGAAGCTACGAGGAGAATACGCGACATAGAACGCAATGTCAGCAATAGTATTCAACATGGCGAGGTTTCTGCGGAGGACTATGACAATATTTTATCATGGCATGTACCCATTCTGGCCATGACTGCAGATGTTATTCAGGCCACCCATGAGGAATGCACAAGGTGTGGAATGGATGGATATGTTTCTAAACCATTTGAAGCTGAACAGCTTTATCGAGAAGTTTCACGTTTTCTCCAATCTCCTGCAAAAGGTACTTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009266 GO:0009267 GO:0009409 GO:0009414 GO:0009415 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009743 GO:0009744 GO:0009755 GO:0009884 GO:0009888 GO:0009894 GO:0009909 GO:0009987 GO:0009991 GO:0010029 GO:0010033 GO:0010035 GO:0010087 GO:0010150 GO:0010271 GO:0010959 GO:0012505 GO:0016020 GO:0016036 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031323 GO:0031329 GO:0031667 GO:0031668 GO:0031669 GO:0031984 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0033554 GO:0033993 GO:0034285 GO:0034756 GO:0034757 GO:0036211 GO:0038023 GO:0040007 GO:0042175 GO:0042221 GO:0042594 GO:0042742 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043269 GO:0043271 GO:0043412 GO:0043424 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048366 GO:0048367 GO:0048509 GO:0048519 GO:0048580 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051049 GO:0051051 GO:0051171 GO:0051193 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070417 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071322 GO:0071324 GO:0071329 GO:0071368 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0071944 GO:0080117 GO:0080190 GO:0090056 GO:0090693 GO:0097305 GO:0097306 GO:0098542 GO:0098827 GO:0099402 GO:0140096 GO:1900140 GO:1901401 GO:1901404 GO:1901564 GO:1901700 GO:1901701 GO:2000026 GO:2000241
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
CHASE HATPase_c HisKA Response_reg

Protein Analysis

1039

Amino Acids

115.85

Weight (kDa)

7.05

Isoelectric Point (pI)

42.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CHASE PF03924 160 - 356 3.9e-38 CHASE domain
HisKA PF00512 444 - 509 4.4e-19 His Kinase A (phospho-acceptor) domain
HATPase_c PF02518 642 - 713 2.4e-14 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Receiver_CRE1 PF24896 739 - 869 5.1e-44 AHK4/CRE1/WOL first receiver domain
Response_reg PF00072 895 - 1026 1.3e-19 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0014276)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G27320
fragaria_vesca FvH4_4g23590 FvH4_4g23590 FvH4_4g23590 FvH4_4g23590
malus_domestica MD13G1120900.v1.1 MD16G1068400.v1.1 MD16G1120900.v1.1
prunus_persica Prupe.1G224300_v2.0.a1
pyrus_communis pycom13g10520
rosa_chinensis RchiOBHm_Chr4g0430011
rosa_laevigata RLG00000007014
rosa_roxburghii Rroxscaffold_5G00371820
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG302900 Rh4CG318400
rosa_wichuraiana Rw4G025680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1490
AarI CACCTGC 1 cut(s) 1993
Acc36I ACCTGC 1 cut(s) 1993
Acc65I GGTACC 1 cut(s) 96
AccB1I GGYRCC 2 cut(s) 96, 149
AccB7I CCANNNNNTGG 1 cut(s) 93
AccI GTMKAC 2 cut(s) 882, 1632
AccII CGCG 2 cut(s) 795, 2880
AciI CCGC 9 cut(s) 205, 951, 1096, 1838, 2139, 2158, 2659, 2772, 2930
AcoI YGGCCR 2 cut(s) 1175, 2973
AcsI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2174, 2304, 2524, 2682
AcyI GRCGYC 1 cut(s) 150
AdeI CACNNNGTG 2 cut(s) 2033, 3021
AfaI GTAC 7 cut(s) 98, 320, 506, 1108, 2539, 2964, 3112
AfiI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2117, 2842, 3107
AflII CTTAAG 1 cut(s) 1129
AflIII ACRYGT 1 cut(s) 739
AjnI CCWGG 5 cut(s) 275, 383, 1458, 1506, 1672
AjuI GAANNNNNNNTTGG 6 cut(s) 251, 283, 1325, 1357, 1647, 1679
Alw21I GWGCWC 4 cut(s) 329, 570, 1539, 2643
Alw26I GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2658
AlwNI CAGNNNCTG 1 cut(s) 335
Ama87I CYCGRG 1 cut(s) 1538
AoxI GGCC 7 cut(s) 429, 1175, 1311, 2074, 2268, 2973, 2997
ApoI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2174, 2304, 2524, 2682
Asp700I GAANNNNTTC 1 cut(s) 924
Asp718I GGTACC 1 cut(s) 96
AspA2I CCTAGG 1 cut(s) 1390
AspLEI GCGC 3 cut(s) 152, 795, 797
AspS9I GGNCC 5 cut(s) 231, 1504, 2009, 2268, 2380
AsuHPI GGTGA 3 cut(s) 155, 1679, 2648
AsuII TTCGAA 1 cut(s) 2168
AvaI CYCGRG 1 cut(s) 1538
AvaII GGWCC 4 cut(s) 231, 1504, 2009, 2380
AvrII CCTAGG 1 cut(s) 1390
BalI TGGCCA 1 cut(s) 2975
BamHI GGATCC 1 cut(s) 1206
BanI GGYRCC 2 cut(s) 96, 149
BanII GRGCYC 3 cut(s) 329, 1539, 2643
BauI CACGAG 1 cut(s) 1980
BbsI GAAGAC 2 cut(s) 10, 254
Bbv12I GWGCWC 4 cut(s) 329, 570, 1539, 2643
BccI CCATC 9 cut(s) 140, 216, 481, 932, 1082, 1196, 2020, 2846, 3026
BceAI ACGGC 1 cut(s) 1162
BcgI CGANNNNNNTGC 2 cut(s) 2909, 2943
BciT130I CCWGG 5 cut(s) 277, 385, 1460, 1508, 1674
BciVI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BcoDI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2658
BfaI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1967
BfmI CTRYAG 5 cut(s) 392, 1150, 1849, 2751, 2982
BfoI RGCGCY 1 cut(s) 153
BfrI CTTAAG 1 cut(s) 1129
BfuAI ACCTGC 1 cut(s) 1993
BfuI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BglI GCCNNNNNGGC 1 cut(s) 1174
BglII AGATCT 2 cut(s) 892, 1420
BlnI CCTAGG 1 cut(s) 1390
Bme1390I CCNGG 5 cut(s) 277, 385, 1460, 1508, 1674
Bme18I GGWCC 4 cut(s) 231, 1504, 2009, 2380
BmeT110I CYCGRG 1 cut(s) 1538
BmgT120I GGNCC 5 cut(s) 231, 1504, 2009, 2268, 2380
BmrFI CCNGG 5 cut(s) 277, 385, 1460, 1508, 1674
BmsI GCATC 8 cut(s) 45, 52, 378, 1134, 2222, 2341, 2806, 2829
BpiI GAAGAC 2 cut(s) 10, 254
BplI GAGNNNNNCTC 2 cut(s) 2771, 2803
BpmI CTGGAG 2 cut(s) 698, 1553
Bpu10I CCTNAGC 2 cut(s) 723, 2472
Bpu14I TTCGAA 1 cut(s) 2168
BpuEI CTTGAG 2 cut(s) 1286, 1590
BsaBI GATNNNNATC 3 cut(s) 443, 942, 1419
BsaHI GRCGYC 1 cut(s) 150
BsaI GGTCTC 1 cut(s) 523
BsaJI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2112, 2601
BsaWI WCCGGW 1 cut(s) 2461
BsaXI ACNNNNNCTCC 2 cut(s) 3075, 3105
Bsc4I CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2117, 2842, 3107
Bse1I ACTGG 1 cut(s) 220
Bse3DI GCAATG 1 cut(s) 2899
Bse8I GATNNNNATC 3 cut(s) 443, 942, 1419
BseBI CCWGG 5 cut(s) 277, 385, 1460, 1508, 1674
BseDI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2112, 2601
BseGI GGATG 7 cut(s) 60, 393, 1579, 2213, 2701, 2857, 3037
BseJI GATNNNNATC 3 cut(s) 443, 942, 1419
BseLI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2117, 2842, 3107
BseMI GCAATG 1 cut(s) 2899
BseMII CTCAG 8 cut(s) 330, 342, 737, 1352, 1653, 2232, 2316, 2578
BseNI ACTGG 1 cut(s) 220
BsePI GCGCGC 1 cut(s) 793
BseRI GAGGAG 2 cut(s) 1781, 2884
BseYI CCCAGC 2 cut(s) 1624, 1854
BsgI GTGCAG 1 cut(s) 2784
Bsh1236I CGCG 2 cut(s) 795, 2880
BshFI GGCC 7 cut(s) 431, 1177, 1313, 2076, 2270, 2975, 2999
BshNI GGYRCC 2 cut(s) 96, 149
BsiHKAI GWGCWC 4 cut(s) 329, 570, 1539, 2643
BsiHKCI CYCGRG 1 cut(s) 1538
BsiSI CCGG 2 cut(s) 2462, 2843
BslFI GGGAC 1 cut(s) 2022
BslI CCNNNNNNNGG 8 cut(s) 93, 427, 694, 1382, 1837, 2117, 2842, 3107
BsmAI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2658
BsmFI GGGAC 1 cut(s) 2022
BsmI GAATGC 2 cut(s) 2106, 3017
BsnI GGCC 7 cut(s) 431, 1177, 1313, 2076, 2270, 2975, 2999
Bso31I GGTCTC 1 cut(s) 523
BsoBI CYCGRG 1 cut(s) 1538
Bsp119I TTCGAA 1 cut(s) 2168
Bsp1286I GDGCHC 4 cut(s) 329, 570, 1539, 2643
Bsp19I CCATGG 1 cut(s) 2601
BspACI CCGC 9 cut(s) 205, 951, 1096, 1838, 2139, 2158, 2659, 2772, 2930
BspANI GGCC 7 cut(s) 431, 1177, 1313, 2076, 2270, 2975, 2999
BspCNI CTCAG 8 cut(s) 331, 341, 736, 1351, 1652, 2231, 2317, 2577
BspFNI CGCG 2 cut(s) 795, 2880
BspHI TCATGA 2 cut(s) 2079, 2553
BspMAI CTGCAG 4 cut(s) 396, 1154, 1853, 2986
BspMI ACCTGC 1 cut(s) 1993
BspT104I TTCGAA 1 cut(s) 2168
BspT107I GGYRCC 2 cut(s) 96, 149
BspTI CTTAAG 1 cut(s) 1129
BspTNI GGTCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 2899
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 8 cut(s) 276, 1172, 1178, 1390, 1458, 1459, 2112, 2601
BssHII GCGCGC 1 cut(s) 793
BssNAI GTATAC 1 cut(s) 1633
BssNI GRCGYC 1 cut(s) 150
BssSI CACGAG 1 cut(s) 1980
BssT1I CCWWGG 3 cut(s) 1390, 2112, 2601
Bst1107I GTATAC 1 cut(s) 1633
Bst2BI CACGAG 1 cut(s) 1980
Bst2UI CCWGG 5 cut(s) 277, 385, 1460, 1508, 1674
Bst4CI ACNGT 8 cut(s) 733, 1173, 1252, 1354, 1385, 1590, 1753, 2755
Bst6I CTCTTC 4 cut(s) 254, 338, 1875, 2753
BstACI GRCGYC 1 cut(s) 150
BstAFI CTTAAG 1 cut(s) 1129
BstAPI GCANNNNNTGC 2 cut(s) 1144, 2210
BstBI TTCGAA 1 cut(s) 2168
BstC8I GCNNGC 9 cut(s) 301, 795, 1003, 1007, 1563, 1894, 2158, 2580, 2821
BstDSI CCRYGG 3 cut(s) 1172, 1178, 2601
BstENI CCTNNNNNAGG 1 cut(s) 3105
BstF5I GGATG 7 cut(s) 60, 393, 1579, 2213, 2701, 2857, 3037
BstFNI CGCG 2 cut(s) 795, 2880
BstH2I RGCGCY 1 cut(s) 153
BstHHI GCGC 3 cut(s) 152, 795, 797
BstMAI GTCTC 6 cut(s) 347, 523, 1486, 1608, 1787, 2658
BstNI CCWGG 5 cut(s) 277, 385, 1460, 1508, 1674
BstNSI RCATGY 4 cut(s) 743, 1066, 1408, 2963
BstSCI CCNGG 5 cut(s) 275, 383, 1458, 1506, 1672
BstSFI CTRYAG 5 cut(s) 392, 1150, 1849, 2751, 2982
BstUI CGCG 2 cut(s) 795, 2880
BstV2I GAAGAC 2 cut(s) 10, 254
BstX2I RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2181
BstXI CCANNNNNNTGG 4 cut(s) 227, 1466, 1705, 2300
BstYI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2181
BstZ17I GTATAC 1 cut(s) 1633
BsuI GTATCC 5 cut(s) 480, 619, 721, 1366, 1408
BsuRI GGCC 7 cut(s) 431, 1177, 1313, 2076, 2270, 2975, 2999
BtgI CCRYGG 3 cut(s) 1172, 1178, 2601
BtsCI GGATG 7 cut(s) 60, 393, 1579, 2213, 2701, 2857, 3037
BtsI GCAGTG 3 cut(s) 1147, 1551, 2789
BtsIMutI CAGTG 9 cut(s) 336, 507, 1147, 1551, 1586, 1749, 1882, 2760, 2789
BveI ACCTGC 1 cut(s) 1993
Cac8I GCNNGC 9 cut(s) 301, 795, 1003, 1007, 1563, 1894, 2158, 2580, 2821
CaiI CAGNNNCTG 1 cut(s) 335
CciI TCATGA 2 cut(s) 2079, 2553
CfoI GCGC 3 cut(s) 152, 795, 797
Cfr13I GGNCC 5 cut(s) 231, 1504, 2009, 2268, 2380
Csp6I GTAC 7 cut(s) 97, 319, 505, 1107, 2538, 2963, 3111
CspCI CAANNNNNGTGG 2 cut(s) 528, 563
CviQI GTAC 7 cut(s) 97, 319, 505, 1107, 2538, 2963, 3111
DinI GGCGCC 1 cut(s) 151
DraI TTTAAA 1 cut(s) 33
DraIII CACNNNGTG 2 cut(s) 2033, 3021
EaeI YGGCCR 2 cut(s) 1175, 2973
Eam1104I CTCTTC 4 cut(s) 254, 338, 1875, 2753
EarI CTCTTC 4 cut(s) 254, 338, 1875, 2753
EciI GGCGGA 2 cut(s) 194, 966
Ecl136II GAGCTC 3 cut(s) 327, 1537, 2641
Eco130I CCWWGG 3 cut(s) 1390, 2112, 2601
Eco24I GRGCYC 3 cut(s) 329, 1539, 2643
Eco31I GGTCTC 1 cut(s) 523
Eco32I GATATC 2 cut(s) 2285, 2833
Eco47I GGWCC 4 cut(s) 231, 1504, 2009, 2380
Eco53kI GAGCTC 3 cut(s) 327, 1537, 2641
Eco88I CYCGRG 1 cut(s) 1538
EcoICRI GAGCTC 3 cut(s) 327, 1537, 2641
EcoNI CCTNNNNNAGG 1 cut(s) 3105
EcoRI GAATTC 4 cut(s) 924, 1711, 2304, 2524
EcoRII CCWGG 5 cut(s) 275, 383, 1458, 1506, 1672
EcoRV GATATC 2 cut(s) 2285, 2833
EcoT14I CCWWGG 3 cut(s) 1390, 2112, 2601
EcoT38I GRGCYC 3 cut(s) 329, 1539, 2643
EgeI GGCGCC 1 cut(s) 151
EheI GGCGCC 1 cut(s) 151
ErhI CCWWGG 3 cut(s) 1390, 2112, 2601
FalI AAGNNNNNCTT 8 cut(s) 251, 283, 342, 374, 505, 537, 803, 835
FaqI GGGAC 1 cut(s) 2022
FauI CCCGC 1 cut(s) 2165
FauNDI CATATG 1 cut(s) 553
FblI GTMKAC 2 cut(s) 882, 1632
FokI GGATG 7 cut(s) 67, 400, 1586, 2200, 2708, 2864, 3044
FriOI GRGCYC 3 cut(s) 329, 1539, 2643
FspBI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1967
GlaI GCGC 3 cut(s) 151, 794, 796
GsaI CCCAGC 2 cut(s) 1628, 1858
GsuI CTGGAG 2 cut(s) 698, 1553
HaeII RGCGCY 1 cut(s) 153
HaeIII GGCC 7 cut(s) 431, 1177, 1313, 2076, 2270, 2975, 2999
HapII CCGG 2 cut(s) 2462, 2843
HhaI GCGC 3 cut(s) 152, 795, 797
Hin1I GRCGYC 1 cut(s) 150
Hin6I GCGC 3 cut(s) 150, 793, 795
HinP1I GCGC 3 cut(s) 150, 793, 795
HindIII AAGCTT 1 cut(s) 2515
HpaII CCGG 2 cut(s) 2462, 2843
HphI GGTGA 3 cut(s) 155, 1679, 2648
Hpy166II GTNNAC 4 cut(s) 507, 883, 1633, 2710
Hpy8I GTNNAC 4 cut(s) 507, 883, 1633, 2710
Hpy99I CGWCG 1 cut(s) 1912
HpyAV CCTTC 5 cut(s) 763, 909, 1671, 1853, 2492
HpyCH4III ACNGT 8 cut(s) 733, 1173, 1252, 1354, 1385, 1590, 1753, 2755
HpyCH4IV ACGT 2 cut(s) 1788, 3085
HpySE526I ACGT 2 cut(s) 1788, 3085
Hsp92I GRCGYC 1 cut(s) 150
HspAI GCGC 3 cut(s) 150, 793, 795
KasI GGCGCC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 100
LmnI GCTCC 9 cut(s) 573, 679, 712, 832, 1051, 1534, 1621, 1768, 2646
LweI GCATC 8 cut(s) 45, 52, 378, 1134, 2222, 2341, 2806, 2829
MaeI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1967
MaeII ACGT 2 cut(s) 1788, 3085
MaeIII GTNAC 6 cut(s) 969, 984, 1429, 1584, 1747, 2612
MfeI CAATTG 2 cut(s) 480, 1200
MflI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2181
MhlI GDGCHC 4 cut(s) 329, 570, 1539, 2643
MlsI TGGCCA 1 cut(s) 2975
MluNI TGGCCA 1 cut(s) 2975
Mly113I GGCGCC 1 cut(s) 150
MlyI GAGTC 3 cut(s) 349, 977, 1772
MmeI TCCRAC 2 cut(s) 269, 1936
Mox20I TGGCCA 1 cut(s) 2975
MroXI GAANNNNTTC 1 cut(s) 924
MscI TGGCCA 1 cut(s) 2975
MseI TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2178, 2444, 2454
MslI CAYNNNNRTG 2 cut(s) 654, 1409
Msp20I TGGCCA 1 cut(s) 2975
MspA1I CMGCKG 4 cut(s) 1854, 2141, 2160, 2772
MspCI CTTAAG 1 cut(s) 1129
MspI CCGG 2 cut(s) 2462, 2843
MspR9I CCNGG 5 cut(s) 277, 385, 1460, 1508, 1674
MunI CAATTG 2 cut(s) 480, 1200
Mva1269I GAATGC 2 cut(s) 2106, 3017
MvaI CCWGG 5 cut(s) 277, 385, 1460, 1508, 1674
MvnI CGCG 2 cut(s) 795, 2880
NarI GGCGCC 1 cut(s) 150
NcoI CCATGG 1 cut(s) 2601
NdeI CATATG 1 cut(s) 553
NmuCI GTSAC 3 cut(s) 969, 1584, 1747
NspI RCATGY 4 cut(s) 743, 1066, 1408, 2963
NspV TTCGAA 1 cut(s) 2168
PaeR7I CTCGAG 1 cut(s) 1538
PagI TCATGA 2 cut(s) 2079, 2553
PaqCI CACCTGC 1 cut(s) 1993
PasI CCCWGGG 1 cut(s) 1459
PauI GCGCGC 1 cut(s) 793
PciI ACATGT 1 cut(s) 739
PcsI WCGNNNNNNNCGW 1 cut(s) 1904
PctI GAATGC 2 cut(s) 2106, 3017
PdmI GAANNNNTTC 1 cut(s) 924
PfeI GAWTC 9 cut(s) 439, 803, 954, 1155, 1520, 1799, 1959, 2165, 2411
PflMI CCANNNNNTGG 1 cut(s) 93
PfoI TCCNGGA 1 cut(s) 1672
PleI GAGTC 3 cut(s) 349, 976, 1772
PluTI GGCGCC 1 cut(s) 153
PpsI GAGTC 3 cut(s) 349, 976, 1772
PscI ACATGT 1 cut(s) 739
PsiI TTATAA 1 cut(s) 1490
Psp124BI GAGCTC 3 cut(s) 329, 1539, 2643
Psp6I CCWGG 5 cut(s) 275, 383, 1458, 1506, 1672
PspFI CCCAGC 2 cut(s) 1624, 1854
PspGI CCWGG 5 cut(s) 275, 383, 1458, 1506, 1672
PspPI GGNCC 5 cut(s) 231, 1504, 2009, 2268, 2380
PspXI VCTCGAGB 1 cut(s) 1538
PstI CTGCAG 4 cut(s) 396, 1154, 1853, 2986
PstNI CAGNNNCTG 1 cut(s) 335
PsuI RGATCY 9 cut(s) 180, 201, 309, 892, 1123, 1206, 1420, 1886, 2181
PteI GCGCGC 1 cut(s) 793
PvuII CAGCTG 1 cut(s) 1854
RsaI GTAC 7 cut(s) 98, 320, 506, 1108, 2539, 2964, 3112
RsaNI GTAC 7 cut(s) 97, 319, 505, 1107, 2538, 2963, 3111
RseI CAYNNNNRTG 2 cut(s) 654, 1409
SacI GAGCTC 3 cut(s) 329, 1539, 2643
SaqAI TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2178, 2444, 2454
Sau96I GGNCC 5 cut(s) 231, 1504, 2009, 2268, 2380
SchI GAGTC 3 cut(s) 349, 977, 1772
ScrFI CCNGG 5 cut(s) 277, 385, 1460, 1508, 1674
SduI GDGCHC 4 cut(s) 329, 570, 1539, 2643
SfaNI GCATC 8 cut(s) 45, 52, 378, 1134, 2222, 2341, 2806, 2829
SfcI CTRYAG 5 cut(s) 392, 1150, 1849, 2751, 2982
SfoI GGCGCC 1 cut(s) 151
Sfr274I CTCGAG 1 cut(s) 1538
SfuI TTCGAA 1 cut(s) 2168
SinI GGWCC 4 cut(s) 231, 1504, 2009, 2380
SlaI CTCGAG 1 cut(s) 1538
SmiMI CAYNNNNRTG 2 cut(s) 654, 1409
SmlI CTYRAG 4 cut(s) 1129, 1301, 1538, 1605
SmoI CTYRAG 4 cut(s) 1129, 1301, 1538, 1605
SsiI CCGC 9 cut(s) 205, 951, 1096, 1838, 2139, 2158, 2659, 2772, 2930
SspDI GGCGCC 1 cut(s) 149
SspI AATATT 1 cut(s) 2947
SspMI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1967
SstI GAGCTC 3 cut(s) 329, 1539, 2643
StyD4I CCNGG 5 cut(s) 275, 383, 1458, 1506, 1672
StyI CCWWGG 3 cut(s) 1390, 2112, 2601
TaaI ACNGT 8 cut(s) 733, 1173, 1252, 1354, 1385, 1590, 1753, 2755
TaiI ACGT 2 cut(s) 1791, 3088
TauI GCSGC 1 cut(s) 1099
TfiI GAWTC 9 cut(s) 439, 803, 954, 1155, 1520, 1799, 1959, 2165, 2411
Tru1I TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2178, 2444, 2454
Tru9I TTAA 9 cut(s) 32, 102, 405, 843, 1112, 1130, 2178, 2444, 2454
TscAI CASTG 9 cut(s) 336, 514, 1154, 1551, 1593, 1756, 1882, 2760, 2796
TseFI GTSAC 3 cut(s) 969, 1584, 1747
Tsp45I GTSAC 3 cut(s) 969, 1584, 1747
TspGWI ACGGA 2 cut(s) 2038, 2644
TspRI CASTG 9 cut(s) 336, 514, 1154, 1551, 1593, 1756, 1882, 2760, 2796
Van91I CCANNNNNTGG 1 cut(s) 93
Vha464I CTTAAG 1 cut(s) 1129
VpaK11BI GGWCC 4 cut(s) 231, 1504, 2009, 2380
XagI CCTNNNNNAGG 1 cut(s) 3105
XapI RAATTY 8 cut(s) 924, 1114, 1711, 1721, 2174, 2304, 2524, 2682
XbaI TCTAGA 2 cut(s) 1423, 1966
XceI RCATGY 4 cut(s) 743, 1066, 1408, 2963
XcmI CCANNNNNNNNNTGG 1 cut(s) 1176
XhoI CTCGAG 1 cut(s) 1538
XmaJI CCTAGG 1 cut(s) 1390
XmiI GTMKAC 2 cut(s) 882, 1632
XmnI GAANNNNTTC 1 cut(s) 924
XspI CTAG 5 cut(s) 947, 1391, 1424, 1478, 1967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.