Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008703

Physical Location & Seq

Genomic Coordinates Forward (+)

28488085 .. 28489374

Gene Structure 1290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g27501.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAAAAGGAACCGGTGCACTTGCATAAGTTCCAAGTTTCAACCCACCAACCTAACACTGAAGTCCCTACCAGCAAAGACGGTCAATCTCACAAGGCATGGCCAGTGACGGAACGCAATCACCGAAGAAAAAGTCTCCGCGAAACAAGTGATCAGAGTTGCTCCACGCCTCGCGATGCTATTGGACCGCTTGCGGGTCACTATCTTCACGGCGCTATCAGAGGTGGAACGCAACTGAAAACAATGGAGGCAGAAAAGAGAGAGCAGGCCGGCAATGACGTCGTTTCCGGGAGGAAAAAGCATAAGAAGGCGCCGGCAGCGAACGACGACGAGGTTGAGGAGTTCTTCGCTATTATCAGGAACATACAAGTGGCAGTCAGCTACTTCAAGAGCGCTGACGTCGGCGGTGGAAGTAAATTTGTGGACGGAGGTTTGAGGGCAATGCTTGAGAGAAACGAGGAGGCAGACGGCGTCAAAGGGAAGGCCAAGACTAAGAAGAAGGAGAATGTGGACTTTGATTTGAATGCGGAACCGGAACCGGAGCCGGAATTTGATCTGTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

188

Amino Acids

20.76

Weight (kDa)

6.72

Isoelectric Point (pI)

46.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25882
fragaria_vesca	FvH4_4g27501 FvH4_4g27520
malus_domestica	MD13G1042800.v1.1
prunus_persica	Prupe.1G309800_v2.0.a1
pyrus_communis	pycom13g03750 pycom13g03760 pycom16g03780 pycom16g03790
rosa_chinensis	RchiOBHm_Chr4g0435331 RchiOBHm_Chr4g0435341
rosa_laevigata	RLG00000006598
rosa_roxburghii	Rroxscaffold_5G00376600 Rroxscaffold_5G00376610
rosa_rugosa	Rorug04G0284300 Rorug04G0284400
rosa_samantha	Rh4AG339900 Rh4AG340000 Rh4BG348400 Rh4CG363000 Rh4DG342200 Rh4DG342400
rosa_wichuraiana	Rw4G029650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	282, 402
AccB1I	GGYRCC	1 cut(s)	310
AccII	CGCG	2 cut(s)	141, 174
AciI	CCGC	5 cut(s)	139, 188, 194, 405, 527
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	2 cut(s)	416, 548
AcuI	CTGAAG	1 cut(s)	81
AcyI	GRCGYC	4 cut(s)	279, 311, 399, 471
AfeI	AGCGCT	1 cut(s)	394
AfiI	CCNNNNNNNGG	1 cut(s)	194
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	3 cut(s)	42, 388, 523
AluBI	AGCT	1 cut(s)	381
AluI	AGCT	1 cut(s)	381
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	140
Alw44I	GTGCAC	1 cut(s)	17
Aor51HI	AGCGCT	1 cut(s)	394
AoxI	GGCC	3 cut(s)	101, 267, 483
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	317
ApoI	RAATTY	2 cut(s)	416, 548
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsiGI	ACCGGT	1 cut(s)	13
AspLEI	GCGC	3 cut(s)	215, 313, 395
AspS9I	GGNCC	1 cut(s)	185
AsuC2I	CCSGG	1 cut(s)	289
AsuHPI	GGTGA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	185
BaeGI	GKGCMC	1 cut(s)	21
BalI	TGGCCA	1 cut(s)	103
BanI	GGYRCC	1 cut(s)	310
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	1 cut(s)	329
BceAI	ACGGC	2 cut(s)	226, 484
BcgI	CGANNNNNNTGC	2 cut(s)	262, 296
BclI	TGATCA	1 cut(s)	151
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	140
BfoI	RGCGCY	3 cut(s)	216, 314, 396
BisI	GCNGC	1 cut(s)	318
BlsI	GCNGC	1 cut(s)	319
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	185
BmiI	GGNNCC	5 cut(s)	12, 312, 531, 537, 543
BmrFI	CCNGG	1 cut(s)	289
BmsI	GCATC	1 cut(s)	166
BpuEI	CTTGAG	1 cut(s)	467
BpuMI	CCSGG	1 cut(s)	289
BsaHI	GRCGYC	4 cut(s)	279, 311, 399, 471
BsaWI	WCCGGW	3 cut(s)	13, 532, 538
Bsc4I	CCNNNNNNNGG	1 cut(s)	194
Bse118I	RCCGGY	3 cut(s)	13, 269, 313
Bse1I	ACTGG	1 cut(s)	104
Bse3DI	GCAATG	2 cut(s)	280, 447
BseLI	CCNNNNNNNGG	1 cut(s)	194
BseMI	GCAATG	2 cut(s)	280, 447
BseNI	ACTGG	1 cut(s)	104
BseRI	GAGGAG	2 cut(s)	353, 473
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	1 cut(s)	329
Bsh1236I	CGCG	2 cut(s)	141, 174
BshFI	GGCC	3 cut(s)	103, 269, 485
BshNI	GGYRCC	1 cut(s)	310
BshTI	ACCGGT	1 cut(s)	13
BsiHKAI	GWGCWC	1 cut(s)	21
BsiSI	CCGG	7 cut(s)	14, 270, 288, 314, 533, 539, 545
BslFI	GGGAC	1 cut(s)	50
BslI	CCNNNNNNNGG	1 cut(s)	194
BsmAI	GTCTC	1 cut(s)	140
BsmFI	GGGAC	1 cut(s)	50
BsmI	GAATGC	1 cut(s)	529
BsnI	GGCC	3 cut(s)	103, 269, 485
Bsp1286I	GDGCHC	1 cut(s)	21
Bsp143I	GATC	2 cut(s)	151, 553
Bsp68I	TCGCGA	1 cut(s)	174
BspACI	CCGC	5 cut(s)	139, 188, 194, 405, 527
BspANI	GGCC	3 cut(s)	103, 269, 485
BspFNI	CGCG	2 cut(s)	141, 174
BspLI	GGNNCC	5 cut(s)	12, 312, 531, 537, 543
BspT107I	GGYRCC	1 cut(s)	310
BsrDI	GCAATG	2 cut(s)	280, 447
BsrFI	RCCGGY	3 cut(s)	13, 269, 313
BsrI	ACTGG	1 cut(s)	104
BssAI	RCCGGY	3 cut(s)	13, 269, 313
BssMI	GATC	2 cut(s)	151, 553
BssNI	GRCGYC	4 cut(s)	279, 311, 399, 471
Bst4CI	ACNGT	1 cut(s)	83
BstACI	GRCGYC	4 cut(s)	279, 311, 399, 471
BstC8I	GCNNGC	4 cut(s)	192, 267, 271, 315
BstDEI	CTNAG	1 cut(s)	492
BstFNI	CGCG	2 cut(s)	141, 174
BstH2I	RGCGCY	3 cut(s)	216, 314, 396
BstHHI	GCGC	3 cut(s)	215, 313, 395
BstKTI	GATC	2 cut(s)	154, 556
BstMAI	GTCTC	1 cut(s)	140
BstMBI	GATC	2 cut(s)	151, 553
BstMWI	GCNNNNNNNGC	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	287
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	2 cut(s)	141, 174
BstV1I	GCAGC	1 cut(s)	329
BsuRI	GGCC	3 cut(s)	103, 269, 485
BtgZI	GCGATG	1 cut(s)	189
BtsIMutI	CAGTG	2 cut(s)	57, 111
BtuMI	TCGCGA	1 cut(s)	174
Cac8I	GCNNGC	4 cut(s)	192, 267, 271, 315
CfoI	GCGC	3 cut(s)	215, 313, 395
Cfr10I	RCCGGY	3 cut(s)	13, 269, 313
Cfr13I	GGNCC	1 cut(s)	185
CseI	GACGC	1 cut(s)	460
CspAI	ACCGGT	1 cut(s)	13
CviAII	CATG	1 cut(s)	99
CviJI	RGCY	5 cut(s)	103, 269, 381, 485, 544
CviKI_1	RGCY	5 cut(s)	103, 269, 381, 485, 544
DdeI	CTNAG	1 cut(s)	492
DinI	GGCGCC	1 cut(s)	312
DpnI	GATC	2 cut(s)	153, 555
DpnII	GATC	2 cut(s)	151, 553
EaeI	YGGCCR	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	185
Eco47III	AGCGCT	1 cut(s)	394
Eco57I	CTGAAG	1 cut(s)	81
EgeI	GGCGCC	1 cut(s)	312
EheI	GGCGCC	1 cut(s)	312
FaeI	CATG	1 cut(s)	102
FaiI	YATR	4 cut(s)	27, 100, 303, 365
FaqI	GGGAC	1 cut(s)	50
FatI	CATG	1 cut(s)	98
FauI	CCCGC	1 cut(s)	187
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	1 cut(s)	318
Fsp4HI	GCNGC	1 cut(s)	318
GlaI	GCGC	3 cut(s)	214, 312, 394
GluI	GCNGC	1 cut(s)	318
HaeII	RGCGCY	3 cut(s)	216, 314, 396
HaeIII	GGCC	3 cut(s)	103, 269, 485
HapII	CCGG	7 cut(s)	14, 270, 288, 314, 533, 539, 545
HgaI	GACGC	1 cut(s)	460
HhaI	GCGC	3 cut(s)	215, 313, 395
Hin1I	GRCGYC	4 cut(s)	279, 311, 399, 471
Hin1II	CATG	1 cut(s)	102
Hin6I	GCGC	3 cut(s)	213, 311, 393
HinP1I	GCGC	3 cut(s)	213, 311, 393
HpaII	CCGG	7 cut(s)	14, 270, 288, 314, 533, 539, 545
HphI	GGTGA	1 cut(s)	113
Hpy166II	GTNNAC	3 cut(s)	19, 424, 511
Hpy188I	TCNGA	2 cut(s)	156, 221
Hpy188III	TCNNGA	3 cut(s)	173, 358, 388
Hpy8I	GTNNAC	3 cut(s)	19, 424, 511
Hpy99I	CGWCG	4 cut(s)	284, 329, 332, 404
HpyAV	CCTTC	3 cut(s)	301, 475, 493
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	2 cut(s)	279, 399
HpyCH4V	TGCA	2 cut(s)	19, 25
HpyF10VI	GCNNNNNNNGC	1 cut(s)	317
HpyF3I	CTNAG	1 cut(s)	492
HpySE526I	ACGT	2 cut(s)	279, 399
Hsp92I	GRCGYC	4 cut(s)	279, 311, 399, 471
Hsp92II	CATG	1 cut(s)	102
HspAI	GCGC	3 cut(s)	213, 311, 393
KasI	GGCGCC	1 cut(s)	310
KroI	GCCGGC	2 cut(s)	269, 313
KroNI	GCCGGC	2 cut(s)	271, 315
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	2 cut(s)	151, 553
LmnI	GCTCC	2 cut(s)	167, 541
Lsp1109I	GCAGC	1 cut(s)	329
LweI	GCATC	1 cut(s)	166
MaeII	ACGT	2 cut(s)	279, 399
MaeIII	GTNAC	2 cut(s)	106, 197
MalI	GATC	2 cut(s)	153, 555
MboI	GATC	2 cut(s)	151, 553
MboII	GAAGA	4 cut(s)	138, 197, 337, 508
MhlI	GDGCHC	1 cut(s)	21
MlsI	TGGCCA	1 cut(s)	103
MluCI	AATT	2 cut(s)	416, 548
MluNI	TGGCCA	1 cut(s)	103
Mly113I	GGCGCC	1 cut(s)	311
Mox20I	TGGCCA	1 cut(s)	103
MroNI	GCCGGC	2 cut(s)	269, 313
MscI	TGGCCA	1 cut(s)	103
MslI	CAYNNNNRTG	1 cut(s)	368
Msp20I	TGGCCA	1 cut(s)	103
MspI	CCGG	7 cut(s)	14, 270, 288, 314, 533, 539, 545
MspR9I	CCNGG	1 cut(s)	289
Mva1269I	GAATGC	1 cut(s)	529
MvnI	CGCG	2 cut(s)	141, 174
MwoI	GCNNNNNNNGC	1 cut(s)	317
NaeI	GCCGGC	2 cut(s)	271, 315
NarI	GGCGCC	1 cut(s)	311
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	2 cut(s)	151, 553
NgoMIV	GCCGGC	2 cut(s)	269, 313
NlaIII	CATG	1 cut(s)	102
NlaIV	GGNNCC	5 cut(s)	12, 312, 531, 537, 543
NmuCI	GTSAC	2 cut(s)	106, 197
NruI	TCGCGA	1 cut(s)	174
PcsI	WCGNNNNNNNCGW	1 cut(s)	121
PctI	GAATGC	1 cut(s)	529
PdiI	GCCGGC	2 cut(s)	271, 315
PflFI	GACNNNGTC	1 cut(s)	470
PfoI	TCCNGGA	1 cut(s)	287
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	1 cut(s)	319
PluTI	GGCGCC	1 cut(s)	314
PspN4I	GGNNCC	5 cut(s)	12, 312, 531, 537, 543
PspPI	GGNCC	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	470
RruI	TCGCGA	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	368
SatI	GCNGC	1 cut(s)	318
Sau3AI	GATC	2 cut(s)	151, 553
Sau96I	GGNCC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	21
SetI	ASST	7 cut(s)	55, 226, 282, 336, 383, 402, 433
SfaNI	GCATC	1 cut(s)	166
SfoI	GGCGCC	1 cut(s)	312
SinI	GGWCC	1 cut(s)	185
SmiMI	CAYNNNNRTG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	2 cut(s)	416, 548
SsiI	CCGC	5 cut(s)	139, 188, 194, 405, 527
SspDI	GGCGCC	1 cut(s)	310
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	2 cut(s)	282, 402
TasI	AATT	2 cut(s)	416, 548
TscAI	CASTG	2 cut(s)	64, 111
TseFI	GTSAC	2 cut(s)	106, 197
TseI	GCWGC	1 cut(s)	317
Tsp45I	GTSAC	2 cut(s)	106, 197
TspGWI	ACGGA	2 cut(s)	125, 441
TspRI	CASTG	2 cut(s)	64, 111
Tth111I	GACNNNGTC	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	17
VpaK11BI	GGWCC	1 cut(s)	185
XapI	RAATTY	2 cut(s)	416, 548
ZraI	GACGTC	2 cut(s)	280, 400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.