Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0008703

Physical Location & Seq

Genomic Coordinates Forward (+)

61964755 .. 61965081

Gene Structure 327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG363000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 327 bp

ATGGAGGCAGAGAAGAGAAAGCCGGCCGGCAACGACGTCGTTTCGCGGAGGCACAAGCATAAGAAGGCACGGGATGAAACGACAGTGAACGAGGACGAGGACGAGGTTCAGGAGTTCTTCGCTATCATCAGGCGCATACACGTGGCAGTCAACTACTTTAAGAGCGCTAACGGCGGTGGAAGTAAATATGTGGACGGAGAGTTGAGGGCAATGATCGAGAGTAACGAGGAGGCGGACGGCGTCAAAGGGATGGCCAAGACTACGAAGGAGGAAAATGTGGGATTCGATTTGAACGCGGAACCGGACCCGGAATTTGATCTGAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

108

Amino Acids

12.14

Weight (kDa)

4.99

Isoelectric Point (pI)

52.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008703)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25882
fragaria_vesca	FvH4_4g27501 FvH4_4g27520
malus_domestica	MD13G1042800.v1.1
prunus_persica	Prupe.1G309800_v2.0.a1
pyrus_communis	pycom13g03750 pycom13g03760 pycom16g03780 pycom16g03790
rosa_chinensis	RchiOBHm_Chr4g0435331 RchiOBHm_Chr4g0435341
rosa_laevigata	RLG00000006598
rosa_roxburghii	Rroxscaffold_5G00376600 Rroxscaffold_5G00376610
rosa_rugosa	Rorug04G0284300 Rorug04G0284400
rosa_samantha	Rh4AG339900 Rh4AG340000 Rh4BG348400 Rh4CG363000 Rh4DG342200 Rh4DG342400
rosa_wichuraiana	Rw4G029650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	39
AccII	CGCG	2 cut(s)	46, 296
AciI	CCGC	4 cut(s)	46, 174, 233, 296
AcoI	YGGCCR	2 cut(s)	24, 252
AcsI	RAATTY	1 cut(s)	311
AcvI	CACGTG	1 cut(s)	142
AcyI	GRCGYC	2 cut(s)	36, 240
AfeI	AGCGCT	1 cut(s)	166
AflIII	ACRYGT	1 cut(s)	139
AgsI	TTSAA	1 cut(s)	292
Aor51HI	AGCGCT	1 cut(s)	166
AoxI	GGCC	2 cut(s)	24, 252
ApoI	RAATTY	1 cut(s)	311
ArsI	GACNNNNNNTTYG	1 cut(s)	296
AspLEI	GCGC	2 cut(s)	135, 167
AspS9I	GGNCC	1 cut(s)	304
AsuC2I	CCSGG	1 cut(s)	308
AvaII	GGWCC	1 cut(s)	304
BalI	TGGCCA	1 cut(s)	254
BbrPI	CACGTG	1 cut(s)	142
BccI	CCATC	1 cut(s)	244
BceAI	ACGGC	2 cut(s)	187, 253
BcgI	CGANNNNNNTGC	2 cut(s)	19, 53
BcnI	CCSGG	1 cut(s)	308
BfoI	RGCGCY	1 cut(s)	168
Bme1390I	CCNGG	1 cut(s)	308
Bme18I	GGWCC	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	304
BmiI	GGNNCC	2 cut(s)	300, 306
BmrFI	CCNGG	1 cut(s)	308
BpuMI	CCSGG	1 cut(s)	308
BsaAI	YACGTR	1 cut(s)	142
BsaHI	GRCGYC	2 cut(s)	36, 240
BsaWI	WCCGGW	1 cut(s)	301
Bse118I	RCCGGY	2 cut(s)	22, 26
Bse3DI	GCAATG	1 cut(s)	216
BseGI	GGATG	2 cut(s)	79, 255
BseMI	GCAATG	1 cut(s)	216
BseMII	CTCAG	1 cut(s)	311
BseRI	GAGGAG	1 cut(s)	242
BseX3I	CGGCCG	1 cut(s)	24
Bsh1236I	CGCG	2 cut(s)	46, 296
Bsh1285I	CGRYCG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	26, 254
BsiEI	CGRYCG	1 cut(s)	27
BsiSI	CCGG	4 cut(s)	23, 27, 302, 308
BsnI	GGCC	2 cut(s)	26, 254
Bsp143I	GATC	2 cut(s)	213, 316
BspACI	CCGC	4 cut(s)	46, 174, 233, 296
BspANI	GGCC	2 cut(s)	26, 254
BspCNI	CTCAG	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	46, 296
BspLI	GGNNCC	2 cut(s)	300, 306
BsrDI	GCAATG	1 cut(s)	216
BsrFI	RCCGGY	2 cut(s)	22, 26
BssAI	RCCGGY	2 cut(s)	22, 26
BssMI	GATC	2 cut(s)	213, 316
BssNI	GRCGYC	2 cut(s)	36, 240
Bst4CI	ACNGT	1 cut(s)	85
Bst6I	CTCTTC	1 cut(s)	8
BstACI	GRCGYC	2 cut(s)	36, 240
BstBAI	YACGTR	1 cut(s)	142
BstC8I	GCNNGC	2 cut(s)	24, 28
BstDEI	CTNAG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	79, 255
BstFNI	CGCG	2 cut(s)	46, 296
BstH2I	RGCGCY	1 cut(s)	168
BstHHI	GCGC	2 cut(s)	135, 167
BstKTI	GATC	2 cut(s)	216, 319
BstMBI	GATC	2 cut(s)	213, 316
BstMCI	CGRYCG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	171
BstSCI	CCNGG	1 cut(s)	306
BstUI	CGCG	2 cut(s)	46, 296
BstZI	CGGCCG	1 cut(s)	24
BsuRI	GGCC	2 cut(s)	26, 254
BtsCI	GGATG	2 cut(s)	79, 255
BtsIMutI	CAGTG	1 cut(s)	90
Cac8I	GCNNGC	2 cut(s)	24, 28
CfoI	GCGC	2 cut(s)	135, 167
Cfr10I	RCCGGY	2 cut(s)	22, 26
Cfr13I	GGNCC	1 cut(s)	304
CseI	GACGC	1 cut(s)	229
CviJI	RGCY	3 cut(s)	22, 26, 254
CviKI_1	RGCY	3 cut(s)	22, 26, 254
DdeI	CTNAG	1 cut(s)	320
DpnI	GATC	2 cut(s)	215, 318
DpnII	GATC	2 cut(s)	213, 316
EaeI	YGGCCR	2 cut(s)	24, 252
EagI	CGGCCG	1 cut(s)	24
Eam1104I	CTCTTC	1 cut(s)	8
EarI	CTCTTC	1 cut(s)	8
EciI	GGCGGA	1 cut(s)	248
EclXI	CGGCCG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	304
Eco47III	AGCGCT	1 cut(s)	166
Eco52I	CGGCCG	1 cut(s)	24
Eco72I	CACGTG	1 cut(s)	142
FaiI	YATR	3 cut(s)	60, 137, 189
FokI	GGATG	2 cut(s)	86, 262
GlaI	GCGC	2 cut(s)	134, 166
HaeII	RGCGCY	1 cut(s)	168
HaeIII	GGCC	2 cut(s)	26, 254
HapII	CCGG	4 cut(s)	23, 27, 302, 308
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	2 cut(s)	135, 167
Hin1I	GRCGYC	2 cut(s)	36, 240
Hin6I	GCGC	2 cut(s)	133, 165
HinP1I	GCGC	2 cut(s)	133, 165
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	282
HpaII	CCGG	4 cut(s)	23, 27, 302, 308
Hpy166II	GTNNAC	3 cut(s)	88, 151, 193
Hpy188I	TCNGA	1 cut(s)	321
Hpy188III	TCNNGA	2 cut(s)	110, 217
Hpy8I	GTNNAC	3 cut(s)	88, 151, 193
Hpy99I	CGWCG	2 cut(s)	38, 41
HpyAV	CCTTC	2 cut(s)	58, 259
HpyCH4III	ACNGT	1 cut(s)	85
HpyCH4IV	ACGT	2 cut(s)	36, 141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	171
HpyF3I	CTNAG	1 cut(s)	320
HpySE526I	ACGT	2 cut(s)	36, 141
Hsp92I	GRCGYC	2 cut(s)	36, 240
HspAI	GCGC	2 cut(s)	133, 165
KroI	GCCGGC	2 cut(s)	22, 26
KroNI	GCCGGC	2 cut(s)	24, 28
Kzo9I	GATC	2 cut(s)	213, 316
LpnPI	CCDG	6 cut(s)	36, 40, 95, 115, 315, 321
MaeII	ACGT	2 cut(s)	36, 141
MaeIII	GTNAC	1 cut(s)	221
MalI	GATC	2 cut(s)	215, 318
MboI	GATC	2 cut(s)	213, 316
MboII	GAAGA	2 cut(s)	25, 109
MlsI	TGGCCA	1 cut(s)	254
MluCI	AATT	1 cut(s)	311
MluNI	TGGCCA	1 cut(s)	254
MnlI	CCTC	8 cut(s)	42, 85, 91, 97, 198, 220, 223, 262
Mox20I	TGGCCA	1 cut(s)	254
MroNI	GCCGGC	2 cut(s)	22, 26
MscI	TGGCCA	1 cut(s)	254
MseI	TTAA	2 cut(s)	159, 325
MslI	CAYNNNNRTG	1 cut(s)	140
Msp20I	TGGCCA	1 cut(s)	254
MspI	CCGG	4 cut(s)	23, 27, 302, 308
MspR9I	CCNGG	1 cut(s)	308
MvnI	CGCG	2 cut(s)	46, 296
MwoI	GCNNNNNNNGC	1 cut(s)	171
NaeI	GCCGGC	2 cut(s)	24, 28
NciI	CCSGG	1 cut(s)	308
NdeII	GATC	2 cut(s)	213, 316
NgoMIV	GCCGGC	2 cut(s)	22, 26
NlaIV	GGNNCC	2 cut(s)	300, 306
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PdiI	GCCGGC	2 cut(s)	24, 28
PfeI	GAWTC	1 cut(s)	282
PflFI	GACNNNGTC	1 cut(s)	239
PmaCI	CACGTG	1 cut(s)	142
PmlI	CACGTG	1 cut(s)	142
Ppu21I	YACGTR	1 cut(s)	142
PspCI	CACGTG	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	300, 306
PspPI	GGNCC	1 cut(s)	304
PsyI	GACNNNGTC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	2 cut(s)	159, 325
Sau3AI	GATC	2 cut(s)	213, 316
Sau96I	GGNCC	1 cut(s)	304
ScrFI	CCNGG	1 cut(s)	308
SetI	ASST	3 cut(s)	39, 108, 144
SinI	GGWCC	1 cut(s)	304
SmiMI	CAYNNNNRTG	1 cut(s)	140
Sse9I	AATT	1 cut(s)	311
SsiI	CCGC	4 cut(s)	46, 174, 233, 296
StyD4I	CCNGG	1 cut(s)	306
TaaI	ACNGT	1 cut(s)	85
TaiI	ACGT	2 cut(s)	39, 144
TaqI	TCGA	2 cut(s)	216, 285
TasI	AATT	1 cut(s)	311
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	2 cut(s)	159, 325
Tru9I	TTAA	2 cut(s)	159, 325
TscAI	CASTG	1 cut(s)	90
TspDTI	ATGAA	1 cut(s)	90
TspGWI	ACGGA	1 cut(s)	210
TspRI	CASTG	1 cut(s)	90
Tth111I	GACNNNGTC	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	304
XapI	RAATTY	1 cut(s)	311
ZraI	GACGTC	1 cut(s)	37

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.