RLG00000006598

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0008703
Physical Location & Seq
Reverse (-)
8845587 .. 8845907
321 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006598

Sequence Viewer

Length: 321 bp
ATGGAGGCAGAGAAGAGAAAGCAGGCCGGCAACGACGTCGTTTCGCTGAGGCACAAGCATAAGAAGGCGCGGGATGAAACGACAGTGAACGAGGATGAGGTTCAGGAGTTCTTCGCTATCATCAGGCGCATACACGTAGCAGTCAACTACTTTAAGAGCGCTAACGGCGGTGGAAGTAAATATGTGGACGGAGAGTTGAAGGCAATGATCGAGAGTAACGAGGCCGCGGACGCCGTCAAAGGGATGGCCAAGACTACGAAGGAGGAGAATGTGGGATTCGATTTGAACGCGGAACCGGACCCGGAATTTGATCCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

107

Amino Acids

11.8

Weight (kDa)

5.21

Isoelectric Point (pI)

43.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 39
AccII CGCG 3 cut(s) 70, 227, 290
AciI CCGC 5 cut(s) 70, 168, 225, 227, 290
AclWI GGATC 1 cut(s) 305
AcoI YGGCCR 1 cut(s) 246
AcsI RAATTY 1 cut(s) 305
AcyI GRCGYC 2 cut(s) 36, 231
AfeI AGCGCT 1 cut(s) 160
AfiI CCNNNNNNNGG 1 cut(s) 240
AflIII ACRYGT 1 cut(s) 133
AgsI TTSAA 2 cut(s) 199, 286
AlwI GGATC 1 cut(s) 305
Aor51HI AGCGCT 1 cut(s) 160
AoxI GGCC 3 cut(s) 24, 222, 246
ApoI RAATTY 1 cut(s) 305
ArsI GACNNNNNNTTYG 1 cut(s) 290
AspLEI GCGC 3 cut(s) 70, 129, 161
AspS9I GGNCC 1 cut(s) 298
AsuC2I CCSGG 1 cut(s) 302
AvaII GGWCC 1 cut(s) 298
BalI TGGCCA 1 cut(s) 248
BbvCI CCTCAGC 1 cut(s) 47
BccI CCATC 1 cut(s) 238
BceAI ACGGC 2 cut(s) 181, 218
BcgI CGANNNNNNTGC 2 cut(s) 19, 53
BcnI CCSGG 1 cut(s) 302
BfoI RGCGCY 1 cut(s) 162
BisI GCNGC 1 cut(s) 225
BlsI GCNGC 1 cut(s) 226
Bme1390I CCNGG 1 cut(s) 302
Bme18I GGWCC 1 cut(s) 298
BmgT120I GGNCC 1 cut(s) 298
BmiI GGNNCC 2 cut(s) 294, 300
BmrFI CCNGG 1 cut(s) 302
Bpu10I CCTNAGC 1 cut(s) 47
BpuMI CCSGG 1 cut(s) 302
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 2 cut(s) 36, 231
BsaJI CCNNGG 1 cut(s) 225
BsaWI WCCGGW 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 26
Bse3DI GCAATG 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 225
BseGI GGATG 3 cut(s) 79, 100, 249
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMI GCAATG 1 cut(s) 210
BseMII CTCAG 1 cut(s) 38
BseRI GAGGAG 1 cut(s) 278
Bsh1236I CGCG 3 cut(s) 70, 227, 290
BshFI GGCC 3 cut(s) 26, 224, 248
BsiSI CCGG 3 cut(s) 27, 296, 302
BslI CCNNNNNNNGG 1 cut(s) 240
BsnI GGCC 3 cut(s) 26, 224, 248
Bsp143I GATC 2 cut(s) 207, 310
BspACI CCGC 5 cut(s) 70, 168, 225, 227, 290
BspANI GGCC 3 cut(s) 26, 224, 248
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 3 cut(s) 70, 227, 290
BspLI GGNNCC 2 cut(s) 294, 300
BspPI GGATC 1 cut(s) 305
BsrDI GCAATG 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 225
BssMI GATC 2 cut(s) 207, 310
BssNI GRCGYC 2 cut(s) 36, 231
Bst4CI ACNGT 1 cut(s) 85
Bst6I CTCTTC 1 cut(s) 8
BstACI GRCGYC 2 cut(s) 36, 231
BstBAI YACGTR 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 24, 28
BstDEI CTNAG 1 cut(s) 47
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 3 cut(s) 79, 100, 249
BstFNI CGCG 3 cut(s) 70, 227, 290
BstH2I RGCGCY 1 cut(s) 162
BstHHI GCGC 3 cut(s) 70, 129, 161
BstKTI GATC 2 cut(s) 210, 313
BstMBI GATC 2 cut(s) 207, 310
BstMWI GCNNNNNNNGC 2 cut(s) 165, 230
BstSCI CCNGG 1 cut(s) 300
BstUI CGCG 3 cut(s) 70, 227, 290
BsuRI GGCC 3 cut(s) 26, 224, 248
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 3 cut(s) 79, 100, 249
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 24, 28
CfoI GCGC 3 cut(s) 70, 129, 161
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 298
Cfr42I CCGCGG 1 cut(s) 228
CseI GACGC 1 cut(s) 239
CviJI RGCY 3 cut(s) 26, 224, 248
CviKI_1 RGCY 3 cut(s) 26, 224, 248
DdeI CTNAG 1 cut(s) 47
DpnI GATC 2 cut(s) 209, 312
DpnII GATC 2 cut(s) 207, 310
EaeI YGGCCR 1 cut(s) 246
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 298
Eco47III AGCGCT 1 cut(s) 160
FaiI YATR 3 cut(s) 60, 131, 183
FauI CCCGC 1 cut(s) 63
Fnu4HI GCNGC 1 cut(s) 225
FokI GGATG 3 cut(s) 86, 107, 256
Fsp4HI GCNGC 1 cut(s) 225
GlaI GCGC 3 cut(s) 69, 128, 160
GluI GCNGC 1 cut(s) 225
HaeII RGCGCY 1 cut(s) 162
HaeIII GGCC 3 cut(s) 26, 224, 248
HapII CCGG 3 cut(s) 27, 296, 302
HgaI GACGC 1 cut(s) 239
HhaI GCGC 3 cut(s) 70, 129, 161
Hin1I GRCGYC 2 cut(s) 36, 231
Hin6I GCGC 3 cut(s) 68, 127, 159
HinP1I GCGC 3 cut(s) 68, 127, 159
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 276
HpaII CCGG 3 cut(s) 27, 296, 302
Hpy166II GTNNAC 3 cut(s) 88, 145, 187
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 2 cut(s) 104, 211
Hpy8I GTNNAC 3 cut(s) 88, 145, 187
Hpy99I CGWCG 2 cut(s) 38, 41
HpyAV CCTTC 3 cut(s) 58, 193, 253
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 2 cut(s) 36, 135
HpyF10VI GCNNNNNNNGC 2 cut(s) 165, 230
HpyF3I CTNAG 1 cut(s) 47
HpySE526I ACGT 2 cut(s) 36, 135
Hsp92I GRCGYC 2 cut(s) 36, 231
HspAI GCGC 3 cut(s) 68, 127, 159
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
KspI CCGCGG 1 cut(s) 228
Kzo9I GATC 2 cut(s) 207, 310
LpnPI CCDG 6 cut(s) 8, 40, 89, 109, 309, 315
MaeII ACGT 2 cut(s) 36, 135
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 209, 312
MboI GATC 2 cut(s) 207, 310
MboII GAAGA 2 cut(s) 25, 103
MlsI TGGCCA 1 cut(s) 248
MluCI AATT 1 cut(s) 305
MluNI TGGCCA 1 cut(s) 248
MnlI CCTC 5 cut(s) 42, 85, 91, 214, 256
Mox20I TGGCCA 1 cut(s) 248
MroNI GCCGGC 1 cut(s) 26
MscI TGGCCA 1 cut(s) 248
MseI TTAA 2 cut(s) 153, 319
Msp20I TGGCCA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 227
MspI CCGG 3 cut(s) 27, 296, 302
MspR9I CCNGG 1 cut(s) 302
MvnI CGCG 3 cut(s) 70, 227, 290
MwoI GCNNNNNNNGC 2 cut(s) 165, 230
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 302
NdeII GATC 2 cut(s) 207, 310
NgoMIV GCCGGC 1 cut(s) 26
NlaIV GGNNCC 2 cut(s) 294, 300
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 1 cut(s) 276
PflFI GACNNNGTC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 294, 300
PspPI GGNCC 1 cut(s) 298
PsyI GACNNNGTC 1 cut(s) 233
SacII CCGCGG 1 cut(s) 228
SaqAI TTAA 2 cut(s) 153, 319
SatI GCNGC 1 cut(s) 225
Sau3AI GATC 2 cut(s) 207, 310
Sau96I GGNCC 1 cut(s) 298
ScrFI CCNGG 1 cut(s) 302
SetI ASST 3 cut(s) 39, 102, 138
Sfr303I CCGCGG 1 cut(s) 228
SgrBI CCGCGG 1 cut(s) 228
SinI GGWCC 1 cut(s) 298
Sse9I AATT 1 cut(s) 305
SsiI CCGC 5 cut(s) 70, 168, 225, 227, 290
StyD4I CCNGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 2 cut(s) 39, 138
TaqI TCGA 2 cut(s) 210, 279
TasI AATT 1 cut(s) 305
TauI GCSGC 1 cut(s) 227
TfiI GAWTC 1 cut(s) 276
Tru1I TTAA 2 cut(s) 153, 319
Tru9I TTAA 2 cut(s) 153, 319
TscAI CASTG 1 cut(s) 90
TspDTI ATGAA 1 cut(s) 90
TspGWI ACGGA 1 cut(s) 204
TspRI CASTG 1 cut(s) 90
Tth111I GACNNNGTC 1 cut(s) 233
VpaK11BI GGWCC 1 cut(s) 298
XapI RAATTY 1 cut(s) 305
ZraI GACGTC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.