Prupe.1G309800_v2.0.a1

NIM1-interacting

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0008703
Physical Location & Seq
Reverse (-)
30142009 .. 30142338
330 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G309800.1

Sequence Viewer

Length: 330 bp
ATGGATGGTGAAAAGCGAAAGCGGGATGACGGGGGCGGAGTAGAGGGGAAGAAAGCGAAAGTGGAGGGAGATCATCCGGAGACGGTAACGGAGGAGGAGGTGGAGGAGTTCTTTGCCATACTGAGGAGGATACACGTGGCAGCCAAGTACTTGGGCAAAACCGACGACGGATTGACGGCGTCAATGAAATGGAGGCCCTCTTTCGAAGTGCAGGATTTTGAGGAAGATAACATTAATCTTATAAAAGATCAAAAGGATGGAGAGAAAAAAGCGGAGGGGGATTTCAGTTTGGATCTCAACTCGCATCCTGAAACTGAAAGCATCAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

110

Amino Acids

12.3

Weight (kDa)

4.69

Isoelectric Point (pI)

52.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 242
AccIII TCCGGA 1 cut(s) 76
AciI CCGC 3 cut(s) 22, 36, 272
AclWI GGATC 1 cut(s) 300
AcvI CACGTG 1 cut(s) 136
AcyI GRCGYC 1 cut(s) 179
AfaI GTAC 1 cut(s) 149
AfiI CCNNNNNNNGG 1 cut(s) 123
AflIII ACRYGT 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 74
AlwI GGATC 1 cut(s) 300
Aor13HI TCCGGA 1 cut(s) 76
AoxI GGCC 1 cut(s) 194
ApeKI GCWGC 1 cut(s) 140
AseI ATTAAT 1 cut(s) 234
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 20
AsuII TTCGAA 1 cut(s) 204
BbrPI CACGTG 1 cut(s) 136
BbvI GCAGC 1 cut(s) 152
BccI CCATC 1 cut(s) 251
BceAI ACGGC 1 cut(s) 192
BciVI GTATCC 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 74
BfuI GTATCC 1 cut(s) 123
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmcAI AGTACT 1 cut(s) 149
BmgT120I GGNCC 1 cut(s) 195
BmsI GCATC 1 cut(s) 313
Bpu14I TTCGAA 1 cut(s) 204
BsaAI YACGTR 1 cut(s) 136
BsaHI GRCGYC 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 76
Bsc4I CCNNNNNNNGG 1 cut(s) 123
BseAI TCCGGA 1 cut(s) 76
BseGI GGATG 5 cut(s) 10, 31, 73, 262, 304
BseLI CCNNNNNNNGG 1 cut(s) 123
BseMII CTCAG 1 cut(s) 113
BseRI GAGGAG 4 cut(s) 107, 110, 119, 139
BseXI GCAGC 1 cut(s) 152
BsgI GTGCAG 1 cut(s) 230
BshFI GGCC 1 cut(s) 196
BsiSI CCGG 1 cut(s) 77
BslI CCNNNNNNNGG 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsnI GGCC 1 cut(s) 196
Bsp119I TTCGAA 1 cut(s) 204
Bsp13I TCCGGA 1 cut(s) 76
Bsp143I GATC 3 cut(s) 70, 247, 292
BspACI CCGC 3 cut(s) 22, 36, 272
BspANI GGCC 1 cut(s) 196
BspCNI CTCAG 1 cut(s) 114
BspEI TCCGGA 1 cut(s) 76
BspPI GGATC 1 cut(s) 300
BspT104I TTCGAA 1 cut(s) 204
BssMI GATC 3 cut(s) 70, 247, 292
BssNI GRCGYC 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 85
BstACI GRCGYC 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 136
BstBI TTCGAA 1 cut(s) 204
BstDEI CTNAG 1 cut(s) 122
BstF5I GGATG 5 cut(s) 10, 31, 73, 262, 304
BstKTI GATC 3 cut(s) 73, 250, 295
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 3 cut(s) 70, 247, 292
BstV1I GCAGC 1 cut(s) 152
BstX2I RGATCY 1 cut(s) 292
BstXI CCANNNNNNTGG 1 cut(s) 151
BstYI RGATCY 1 cut(s) 292
BsuI GTATCC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 196
BtsCI GGATG 5 cut(s) 10, 31, 73, 262, 304
Cfr13I GGNCC 1 cut(s) 195
CseI GACGC 1 cut(s) 168
Csp6I GTAC 1 cut(s) 148
CviJI RGCY 2 cut(s) 143, 196
CviKI_1 RGCY 2 cut(s) 143, 196
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 122
DpnI GATC 3 cut(s) 72, 249, 294
DpnII GATC 3 cut(s) 70, 247, 292
EciI GGCGGA 1 cut(s) 51
Eco72I CACGTG 1 cut(s) 136
EcoO109I RGGNCCY 1 cut(s) 195
Esp3I CGTCTC 1 cut(s) 74
FaiI YATR 2 cut(s) 119, 242
FauI CCCGC 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 141
FokI GGATG 5 cut(s) 17, 38, 60, 269, 291
Fsp4HI GCNGC 1 cut(s) 141
GluI GCNGC 1 cut(s) 141
HaeIII GGCC 1 cut(s) 196
HapII CCGG 1 cut(s) 77
HgaI GACGC 1 cut(s) 168
Hin1I GRCGYC 1 cut(s) 179
HpaII CCGG 1 cut(s) 77
HphI GGTGA 1 cut(s) 20
Hpy188III TCNNGA 2 cut(s) 77, 308
Hpy99I CGWCG 2 cut(s) 167, 170
HpyCH4III ACNGT 1 cut(s) 85
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 1 cut(s) 211
HpyF3I CTNAG 1 cut(s) 122
HpySE526I ACGT 1 cut(s) 135
Hsp92I GRCGYC 1 cut(s) 179
Kpn2I TCCGGA 1 cut(s) 76
Kzo9I GATC 3 cut(s) 70, 247, 292
LpnPI CCDG 3 cut(s) 90, 197, 321
Lsp1109I GCAGC 1 cut(s) 152
LweI GCATC 1 cut(s) 313
MaeII ACGT 1 cut(s) 135
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 72, 249, 294
MboI GATC 3 cut(s) 70, 247, 292
MboII GAAGA 2 cut(s) 61, 236
MflI RGATCY 1 cut(s) 292
MroI TCCGGA 1 cut(s) 76
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 77
NdeII GATC 3 cut(s) 70, 247, 292
NspV TTCGAA 1 cut(s) 204
PflFI GACNNNGTC 1 cut(s) 178
PkrI GCNGC 1 cut(s) 142
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
PshBI ATTAAT 1 cut(s) 234
PsiI TTATAA 1 cut(s) 242
PspCI CACGTG 1 cut(s) 136
PspPI GGNCC 1 cut(s) 195
PsuI RGATCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 178
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 3 cut(s) 70, 247, 292
Sau96I GGNCC 1 cut(s) 195
ScaI AGTACT 1 cut(s) 149
SetI ASST 2 cut(s) 102, 138
SfaNI GCATC 1 cut(s) 313
SfuI TTCGAA 1 cut(s) 204
SsiI CCGC 3 cut(s) 22, 36, 272
TaaI ACNGT 1 cut(s) 85
TaiI ACGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 204
TatI WGTACW 1 cut(s) 147
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 1 cut(s) 200
TspGWI ACGGA 2 cut(s) 104, 183
Tth111I GACNNNGTC 1 cut(s) 178
VspI ATTAAT 1 cut(s) 234
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.