Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

30490405 .. 30491626

Gene Structure 1222 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g31280.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTCTAGTGAACGTTGCTGCTCTCCGGTTTACGTTTTCTGCTCTTTTTAGGAGTCGTTCTGCAGCTTCTGACTTTCAAGTCTTGCAGATCAGAAGAAGTTTCTTCATGAAGCCGGTAGTGATGAGAGCGAGGCAGCCTGCCAGAACCGAAAATGCAAAAACTCTAAACAGGAGAATGCAGAAGAAGTACAATGGCACGCCCACGAAGCCGAGGCTTTCGGTATTCTGCTCAGACAAACAATTGTATGCTATGCTGGTAGATGACCAAAACAAGAAGTGCTTGTTTTATGGAAGCACGCTGCAGAAATCTATACGGCAGGATCCCCATTGTAGTACCGTTGAAGCTGCTAAACGTGTTGGCGAGGAGTTGATCAAGGCCTGCAATGATCTGAACATAGGGGAAATATTGTCTTATGATCGCAACGGCTTTGCTACCGGGGAAAGGATTCAAGCATTAGAGATTGCAATTGCAGAGTATGGGTTCTTGTCGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

166

Amino Acids

18.77

Weight (kDa)

9.92

Isoelectric Point (pI)

53.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	49 - 161	7.2e-17	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	80
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	2 cut(s)	317, 330
AfaI	GTAC	2 cut(s)	191, 337
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	80, 344, 452
AluBI	AGCT	2 cut(s)	68, 347
AluI	AGCT	2 cut(s)	68, 347
AlwI	GGATC	2 cut(s)	317, 330
AlwNI	CAGNNNCTG	1 cut(s)	71
AoxI	GGCC	1 cut(s)	378
ApeKI	GCWGC	5 cut(s)	20, 65, 136, 301, 347
Asp700I	GAANNNNTTC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	322
BbvI	GCAGC	5 cut(s)	7, 77, 148, 288, 334
BceAI	ACGGC	2 cut(s)	332, 442
BclI	TGATCA	1 cut(s)	372
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	2 cut(s)	63, 302
BisI	GCNGC	5 cut(s)	21, 66, 137, 302, 348
BlsI	GCNGC	5 cut(s)	22, 67, 138, 303, 349
Bme1390I	CCNGG	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	439
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	212, 438
BsaWI	WCCGGW	1 cut(s)	27
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	1 cut(s)	115
Bse3DI	GCAATG	1 cut(s)	391
BseDI	CCNNGG	2 cut(s)	212, 438
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	391
BseMII	CTCAG	1 cut(s)	246
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	5 cut(s)	7, 77, 148, 288, 334
BshFI	GGCC	1 cut(s)	380
BsiSI	CCGG	3 cut(s)	28, 116, 438
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	1 cut(s)	380
Bsp143I	GATC	5 cut(s)	90, 322, 372, 388, 418
BspANI	GGCC	1 cut(s)	380
BspCNI	CTCAG	1 cut(s)	245
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	2 cut(s)	67, 306
BspPI	GGATC	2 cut(s)	317, 330
BsrDI	GCAATG	1 cut(s)	391
BsrFI	RCCGGY	1 cut(s)	115
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	2 cut(s)	212, 438
BssMI	GATC	5 cut(s)	90, 322, 372, 388, 418
Bst4CI	ACNGT	1 cut(s)	340
BstC8I	GCNNGC	4 cut(s)	141, 200, 299, 382
BstDEI	CTNAG	1 cut(s)	232
BstKTI	GATC	5 cut(s)	93, 325, 375, 391, 421
BstMBI	GATC	5 cut(s)	90, 322, 372, 388, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	2 cut(s)	63, 302
BstV1I	GCAGC	5 cut(s)	7, 77, 148, 288, 334
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	1 cut(s)	380
Cac8I	GCNNGC	4 cut(s)	141, 200, 299, 382
CaiI	CAGNNNCTG	1 cut(s)	71
CciI	TCATGA	1 cut(s)	108
Cfr10I	RCCGGY	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	190, 336
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	9 cut(s)	5, 68, 115, 139, 211, 217, 347, 380, 429
CviKI_1	RGCY	9 cut(s)	5, 68, 115, 139, 211, 217, 347, 380, 429
CviQI	GTAC	2 cut(s)	190, 336
DdeI	CTNAG	1 cut(s)	232
DpnI	GATC	5 cut(s)	92, 324, 374, 390, 420
DpnII	GATC	5 cut(s)	90, 322, 372, 388, 418
DrdI	GACNNNNNNGTC	1 cut(s)	80
DseDI	GACNNNNNNGTC	1 cut(s)	80
Eco147I	AGGCCT	1 cut(s)	380
FaeI	CATG	1 cut(s)	112
FaiI	YATR	8 cut(s)	110, 249, 254, 291, 314, 398, 417, 480
FalI	AAGNNNNNCTT	2 cut(s)	266, 298
FatI	CATG	1 cut(s)	108
FbaI	TGATCA	1 cut(s)	372
Fnu4HI	GCNGC	5 cut(s)	21, 66, 137, 302, 348
Fsp4HI	GCNGC	5 cut(s)	21, 66, 137, 302, 348
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	5 cut(s)	21, 66, 137, 302, 348
HaeIII	GGCC	1 cut(s)	380
HapII	CCGG	3 cut(s)	28, 116, 438
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	2 cut(s)	55, 448
HpaII	CCGG	3 cut(s)	28, 116, 438
Hpy166II	GTNNAC	2 cut(s)	13, 33
Hpy188I	TCNGA	4 cut(s)	73, 95, 235, 393
Hpy188III	TCNNGA	2 cut(s)	109, 492
Hpy8I	GTNNAC	2 cut(s)	13, 33
HpyCH4III	ACNGT	1 cut(s)	340
HpyCH4IV	ACGT	3 cut(s)	15, 35, 355
HpyCH4V	TGCA	8 cut(s)	65, 88, 158, 181, 304, 384, 467, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	232
HpySE526I	ACGT	3 cut(s)	15, 35, 355
Hsp92II	CATG	1 cut(s)	112
Ksp22I	TGATCA	1 cut(s)	372
Kzo9I	GATC	5 cut(s)	90, 322, 372, 388, 418
LpnPI	CCDG	9 cut(s)	41, 129, 153, 157, 157, 242, 305, 394, 451
Lsp1109I	GCAGC	5 cut(s)	7, 77, 148, 288, 334
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	3 cut(s)	15, 35, 355
MalI	GATC	5 cut(s)	92, 324, 374, 390, 420
MboI	GATC	5 cut(s)	90, 322, 372, 388, 418
MboII	GAAGA	3 cut(s)	97, 108, 196
MfeI	CAATTG	2 cut(s)	242, 468
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	2 cut(s)	242, 468
MlyI	GAGTC	1 cut(s)	64
MnlI	CCTC	3 cut(s)	126, 207, 358
MroXI	GAANNNNTTC	1 cut(s)	447
MspI	CCGG	3 cut(s)	28, 116, 438
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	2 cut(s)	242, 468
Mva1269I	GAATGC	1 cut(s)	183
MwoI	GCNNNNNNNGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	5 cut(s)	90, 322, 372, 388, 418
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	237
PagI	TCATGA	1 cut(s)	108
PceI	AGGCCT	1 cut(s)	380
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	1 cut(s)	448
PkrI	GCNGC	5 cut(s)	22, 67, 138, 303, 349
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	2 cut(s)	67, 306
PstNI	CAGNNNCTG	1 cut(s)	71
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	191, 337
RsaNI	GTAC	2 cut(s)	190, 336
SatI	GCNGC	5 cut(s)	21, 66, 137, 302, 348
Sau3AI	GATC	5 cut(s)	90, 322, 372, 388, 418
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	439
SetI	ASST	5 cut(s)	18, 38, 70, 349, 358
SfcI	CTRYAG	2 cut(s)	63, 302
Sse9I	AATT	2 cut(s)	242, 468
SseBI	AGGCCT	1 cut(s)	380
SspI	AATATT	1 cut(s)	408
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	1 cut(s)	437
TaaI	ACNGT	1 cut(s)	340
TaiI	ACGT	3 cut(s)	18, 38, 358
TaqI	TCGA	1 cut(s)	491
TasI	AATT	2 cut(s)	242, 468
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	1 cut(s)	448
TseI	GCWGC	5 cut(s)	20, 65, 136, 301, 347
TspDTI	ATGAA	2 cut(s)	97, 125
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.