Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

51842473 .. 51844094

Gene Structure 1622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ25895

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGCTCTAGTGAATGTTGCTGCTCTCCAGTTTACAACTTCTGCTCTTTTTGGGACTCGTTCTGCAACTTCAAACCTTCAGGTCTTGCAGACTAAGAGAAATTATTTCTCCGTGAAGCCGGTAGTAATGAGAGCGAGGCAGCATGCCAGAACCGAAAGTGCGAAAACTCTAAACAGAAGAATGCAGAAGAAGTACAATGGCACGCCTAAGAAGCCGAGGCTTTCAGTATTCTGTTCAGACAAACAATTGTATGCTATGCTGGTAGATGACCAAAACAAGAAGTGCTTGTTTTATGGAAGCACTCTACAGAAATCTATTCGTCAGGATCCTCATTGTAGTACCGCTGAAGCGGCAAAACGTGTTGGCGAGGAGTTAATCAAGGCCTGCAATGATCTCAACATCGGTGAAATATCGTCTTATGATCGCAATGGCTTTGCTACTGGGGAAAGGATTCACGCATTTGAGATTGCAATTTCAGAATATGGGTTCTTGTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

166

Amino Acids

18.71

Weight (kDa)

9.81

Isoelectric Point (pI)

47.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	50 - 162	1.2e-16	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	342, 350
AclWI	GGATC	2 cut(s)	320, 333
AcuI	CTGAAG	2 cut(s)	62, 366
AfaI	GTAC	2 cut(s)	194, 340
AflIII	ACRYGT	1 cut(s)	358
AgsI	TTSAA	1 cut(s)	72
AlwI	GGATC	2 cut(s)	320, 333
AoxI	GGCC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	20, 139
Asp700I	GAANNNNTTC	1 cut(s)	450
AsuHPI	GGTGA	1 cut(s)	416
BamHI	GGATCC	1 cut(s)	325
BbvI	GCAGC	2 cut(s)	7, 151
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	1 cut(s)	305
BisI	GCNGC	3 cut(s)	21, 140, 351
BlsI	GCNGC	3 cut(s)	22, 141, 352
BmiI	GGNNCC	1 cut(s)	327
BmrI	ACTGGG	1 cut(s)	450
BmuI	ACTGGG	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	118
Bse1I	ACTGG	2 cut(s)	28, 445
Bse3DI	GCAATG	2 cut(s)	394, 433
BseDI	CCNNGG	1 cut(s)	215
BseMI	GCAATG	2 cut(s)	394, 433
BseNI	ACTGG	2 cut(s)	28, 445
BseRI	GAGGAG	1 cut(s)	383
BseXI	GCAGC	2 cut(s)	7, 151
BshFI	GGCC	1 cut(s)	383
BsiSI	CCGG	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	67
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	186
BsnI	GGCC	1 cut(s)	383
Bsp143I	GATC	3 cut(s)	325, 391, 421
BspACI	CCGC	2 cut(s)	342, 350
BspANI	GGCC	1 cut(s)	383
BspLI	GGNNCC	1 cut(s)	327
BspPI	GGATC	2 cut(s)	320, 333
BsrDI	GCAATG	2 cut(s)	394, 433
BsrFI	RCCGGY	1 cut(s)	118
BsrI	ACTGG	2 cut(s)	28, 445
BssAI	RCCGGY	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	3 cut(s)	325, 391, 421
BstC8I	GCNNGC	3 cut(s)	144, 203, 385
BstDEI	CTNAG	2 cut(s)	93, 207
BstKTI	GATC	3 cut(s)	328, 394, 424
BstMBI	GATC	3 cut(s)	325, 391, 421
BstMWI	GCNNNNNNNGC	2 cut(s)	211, 350
BstNSI	RCATGY	1 cut(s)	146
BstSFI	CTRYAG	1 cut(s)	305
BstV1I	GCAGC	2 cut(s)	7, 151
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	383
Cac8I	GCNNGC	3 cut(s)	144, 203, 385
Cfr10I	RCCGGY	1 cut(s)	118
Csp6I	GTAC	2 cut(s)	193, 339
CviAII	CATG	1 cut(s)	143
CviJI	RGCY	6 cut(s)	5, 118, 214, 220, 383, 432
CviKI_1	RGCY	6 cut(s)	5, 118, 214, 220, 383, 432
CviQI	GTAC	2 cut(s)	193, 339
DdeI	CTNAG	2 cut(s)	93, 207
DpnI	GATC	3 cut(s)	327, 393, 423
DpnII	GATC	3 cut(s)	325, 391, 421
Eco147I	AGGCCT	1 cut(s)	383
Eco57I	CTGAAG	2 cut(s)	62, 366
FaeI	CATG	1 cut(s)	146
FaiI	YATR	6 cut(s)	144, 252, 257, 294, 420, 483
FalI	AAGNNNNNCTT	2 cut(s)	269, 301
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	1 cut(s)	142
Fnu4HI	GCNGC	3 cut(s)	21, 140, 351
Fsp4HI	GCNGC	3 cut(s)	21, 140, 351
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	3 cut(s)	21, 140, 351
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	1 cut(s)	383
HapII	CCGG	1 cut(s)	119
Hin1II	CATG	1 cut(s)	146
HinfI	GANTC	2 cut(s)	55, 451
HpaII	CCGG	1 cut(s)	119
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	2 cut(s)	238, 478
Hpy188III	TCNNGA	2 cut(s)	323, 495
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	1 cut(s)	86
HpyCH4IV	ACGT	1 cut(s)	358
HpyCH4V	TGCA	5 cut(s)	65, 88, 184, 387, 470
HpyF10VI	GCNNNNNNNGC	2 cut(s)	211, 350
HpyF3I	CTNAG	2 cut(s)	93, 207
HpySE526I	ACGT	1 cut(s)	358
Hsp92II	CATG	1 cut(s)	146
Kzo9I	GATC	3 cut(s)	325, 391, 421
LpnPI	CCDG	8 cut(s)	41, 65, 132, 160, 245, 308, 397, 426
Lsp1109I	GCAGC	2 cut(s)	7, 151
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	358
MalI	GATC	3 cut(s)	327, 393, 423
MboI	GATC	3 cut(s)	325, 391, 421
MboII	GAAGA	2 cut(s)	189, 199
MfeI	CAATTG	1 cut(s)	245
MflI	RGATCY	1 cut(s)	325
MluCI	AATT	3 cut(s)	100, 245, 471
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	129, 210, 339, 361
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	374
MspA1I	CMGCKG	1 cut(s)	344
MspI	CCGG	1 cut(s)	119
MunI	CAATTG	1 cut(s)	245
Mva1269I	GAATGC	1 cut(s)	186
MwoI	GCNNNNNNNGC	2 cut(s)	211, 350
NdeII	GATC	3 cut(s)	325, 391, 421
NlaIII	CATG	1 cut(s)	146
NlaIV	GGNNCC	1 cut(s)	327
NmeAIII	GCCGAG	1 cut(s)	240
NspI	RCATGY	1 cut(s)	146
PaeI	GCATGC	1 cut(s)	146
PceI	AGGCCT	1 cut(s)	383
PctI	GAATGC	1 cut(s)	186
PdmI	GAANNNNTTC	1 cut(s)	450
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	3 cut(s)	22, 141, 352
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PspN4I	GGNNCC	1 cut(s)	327
PsuI	RGATCY	1 cut(s)	325
RsaI	GTAC	2 cut(s)	194, 340
RsaNI	GTAC	2 cut(s)	193, 339
SaqAI	TTAA	1 cut(s)	374
SatI	GCNGC	3 cut(s)	21, 140, 351
Sau3AI	GATC	3 cut(s)	325, 391, 421
SchI	GAGTC	1 cut(s)	49
SetI	ASST	3 cut(s)	78, 84, 361
SfcI	CTRYAG	1 cut(s)	305
SphI	GCATGC	1 cut(s)	146
Sse9I	AATT	3 cut(s)	100, 245, 471
SseBI	AGGCCT	1 cut(s)	383
SsiI	CCGC	2 cut(s)	342, 350
SspMI	CTAG	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	383
TaiI	ACGT	1 cut(s)	361
TasI	AATT	3 cut(s)	100, 245, 471
TatI	WGTACW	1 cut(s)	192
TauI	GCSGC	1 cut(s)	353
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	1 cut(s)	374
Tru9I	TTAA	1 cut(s)	374
TseI	GCWGC	2 cut(s)	20, 139
TspGWI	ACGGA	1 cut(s)	100
XceI	RCATGY	1 cut(s)	146
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.