Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

3779715 .. 3780479

Gene Structure 765 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g03450.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGCTAGTGAACGTTGTTGCTTTCCAGTTTACGTTTTTTGCTCTTTTTGGGAGTCGTTCTGCAGCTTCTGACTTTCAAGTCTTGCAGACCAGAAGAAGTTTCTTCATGAAGCCGGTAGTGATGAGAGCGTGGCAGCCTGCCAGAATCGAAAATGCAAAAACTCTAAACAGGAGAATGCAGAAGAAGTACAATGGCACTCCCACAAACCCGAGGCTTTCGGTATTTTGTTCAGACAAACAATTATATGTTATCCTGGTAGATGACCAGAACAAGAAGTGCTTGTTTTATGGAAGCACGCTGCAGAAAGCTATACGGCAGGATCCCCATTGTAGTACCGTTGTAGCTGCTAAACGTGTTGGCGAGGAGTTGATCAAGGCTTGCAATGATCTGAACATAGGGGAAATGTCGTCTTATGATCACAATGACTTTGCTACCGGGGAAAAGATTCAAGCATTTGAGATTGCAATTGCAGAGTATGGGTTCTTGTTGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

165

Amino Acids

18.73

Weight (kDa)

9.39

Isoelectric Point (pI)

50.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	54 - 161	2e-12	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	77
AclI	AACGTT	1 cut(s)	12
AclWI	GGATC	2 cut(s)	314, 327
AfaI	GTAC	2 cut(s)	188, 334
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	77, 449
AjnI	CCWGG	1 cut(s)	252
AluBI	AGCT	3 cut(s)	65, 308, 344
AluI	AGCT	3 cut(s)	65, 308, 344
AlwI	GGATC	2 cut(s)	314, 327
AlwNI	CAGNNNCTG	1 cut(s)	68
Ama87I	CYCGRG	1 cut(s)	208
ApeKI	GCWGC	4 cut(s)	62, 133, 298, 344
Asp700I	GAANNNNTTC	1 cut(s)	444
AsuC2I	CCSGG	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	319
BbvI	GCAGC	4 cut(s)	74, 145, 285, 331
BceAI	ACGGC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	254
BclI	TGATCA	2 cut(s)	369, 415
BcnI	CCSGG	1 cut(s)	436
BfaI	CTAG	1 cut(s)	5
BfmI	CTRYAG	2 cut(s)	60, 299
BisI	GCNGC	4 cut(s)	63, 134, 299, 345
BlsI	GCNGC	4 cut(s)	64, 135, 300, 346
Bme1390I	CCNGG	2 cut(s)	254, 436
BmeT110I	CYCGRG	1 cut(s)	208
BmiI	GGNNCC	1 cut(s)	321
BmrFI	CCNGG	2 cut(s)	254, 436
BpuMI	CCSGG	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	209, 435
Bse118I	RCCGGY	1 cut(s)	112
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	388
BseBI	CCWGG	1 cut(s)	254
BseDI	CCNNGG	2 cut(s)	209, 435
BseMI	GCAATG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	4 cut(s)	74, 145, 285, 331
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	2 cut(s)	113, 435
BsmI	GAATGC	1 cut(s)	180
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	319, 369, 385, 415
BspHI	TCATGA	1 cut(s)	105
BspLI	GGNNCC	1 cut(s)	321
BspMAI	CTGCAG	2 cut(s)	64, 303
BspPI	GGATC	2 cut(s)	314, 327
BsrDI	GCAATG	1 cut(s)	388
BsrFI	RCCGGY	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	25
BssAI	RCCGGY	1 cut(s)	112
BssECI	CCNNGG	2 cut(s)	209, 435
BssMI	GATC	4 cut(s)	319, 369, 385, 415
Bst2UI	CCWGG	1 cut(s)	254
Bst4CI	ACNGT	1 cut(s)	337
BstC8I	GCNNGC	3 cut(s)	138, 296, 379
BstKTI	GATC	4 cut(s)	322, 372, 388, 418
BstMBI	GATC	4 cut(s)	319, 369, 385, 415
BstNI	CCWGG	1 cut(s)	254
BstSCI	CCNGG	2 cut(s)	252, 434
BstSFI	CTRYAG	2 cut(s)	60, 299
BstV1I	GCAGC	4 cut(s)	74, 145, 285, 331
BstX2I	RGATCY	1 cut(s)	319
BstYI	RGATCY	1 cut(s)	319
Cac8I	GCNNGC	3 cut(s)	138, 296, 379
CaiI	CAGNNNCTG	1 cut(s)	68
CciI	TCATGA	1 cut(s)	105
Cfr10I	RCCGGY	1 cut(s)	112
Csp6I	GTAC	2 cut(s)	187, 333
CviAII	CATG	1 cut(s)	106
CviJI	RGCY	7 cut(s)	65, 112, 136, 214, 308, 344, 377
CviKI_1	RGCY	7 cut(s)	65, 112, 136, 214, 308, 344, 377
CviQI	GTAC	2 cut(s)	187, 333
DpnI	GATC	4 cut(s)	321, 371, 387, 417
DpnII	GATC	4 cut(s)	319, 369, 385, 415
DrdI	GACNNNNNNGTC	1 cut(s)	77
DseDI	GACNNNNNNGTC	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	208
EcoRII	CCWGG	1 cut(s)	252
FaeI	CATG	1 cut(s)	109
FaiI	YATR	8 cut(s)	107, 244, 246, 288, 311, 395, 414, 477
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FatI	CATG	1 cut(s)	105
FbaI	TGATCA	2 cut(s)	369, 415
Fnu4HI	GCNGC	4 cut(s)	63, 134, 299, 345
Fsp4HI	GCNGC	4 cut(s)	63, 134, 299, 345
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	4 cut(s)	63, 134, 299, 345
HapII	CCGG	2 cut(s)	113, 435
Hin1II	CATG	1 cut(s)	109
HinfI	GANTC	3 cut(s)	52, 144, 445
HpaII	CCGG	2 cut(s)	113, 435
Hpy166II	GTNNAC	2 cut(s)	10, 30
Hpy188I	TCNGA	3 cut(s)	70, 232, 390
Hpy188III	TCNNGA	1 cut(s)	106
Hpy8I	GTNNAC	2 cut(s)	10, 30
HpyCH4III	ACNGT	1 cut(s)	337
HpyCH4IV	ACGT	3 cut(s)	12, 32, 352
HpyCH4V	TGCA	8 cut(s)	62, 85, 155, 178, 301, 381, 464, 470
HpySE526I	ACGT	3 cut(s)	12, 32, 352
Hsp92II	CATG	1 cut(s)	109
Ksp22I	TGATCA	2 cut(s)	369, 415
Kzo9I	GATC	4 cut(s)	319, 369, 385, 415
Lsp1109I	GCAGC	4 cut(s)	74, 145, 285, 331
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	3 cut(s)	12, 32, 352
MalI	GATC	4 cut(s)	321, 371, 387, 417
MboI	GATC	4 cut(s)	319, 369, 385, 415
MboII	GAAGA	3 cut(s)	94, 105, 193
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	319
MluCI	AATT	2 cut(s)	239, 465
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	2 cut(s)	204, 355
MroXI	GAANNNNTTC	1 cut(s)	444
MspI	CCGG	2 cut(s)	113, 435
MspR9I	CCNGG	2 cut(s)	254, 436
MunI	CAATTG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	254
NciI	CCSGG	1 cut(s)	436
NdeII	GATC	4 cut(s)	319, 369, 385, 415
NlaIII	CATG	1 cut(s)	109
NlaIV	GGNNCC	1 cut(s)	321
PagI	TCATGA	1 cut(s)	105
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	144, 445
PkrI	GCNGC	4 cut(s)	64, 135, 300, 346
PleI	GAGTC	1 cut(s)	60
PpsI	GAGTC	1 cut(s)	60
Psp1406I	AACGTT	1 cut(s)	12
Psp6I	CCWGG	1 cut(s)	252
PspGI	CCWGG	1 cut(s)	252
PspN4I	GGNNCC	1 cut(s)	321
PstI	CTGCAG	2 cut(s)	64, 303
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	1 cut(s)	319
RsaI	GTAC	2 cut(s)	188, 334
RsaNI	GTAC	2 cut(s)	187, 333
SatI	GCNGC	4 cut(s)	63, 134, 299, 345
Sau3AI	GATC	4 cut(s)	319, 369, 385, 415
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	2 cut(s)	254, 436
SetI	ASST	6 cut(s)	15, 35, 67, 310, 346, 355
SfcI	CTRYAG	2 cut(s)	60, 299
Sse9I	AATT	2 cut(s)	239, 465
SspMI	CTAG	1 cut(s)	5
StyD4I	CCNGG	2 cut(s)	252, 434
TaaI	ACNGT	1 cut(s)	337
TaiI	ACGT	3 cut(s)	15, 35, 355
TaqI	TCGA	1 cut(s)	147
TasI	AATT	2 cut(s)	239, 465
TatI	WGTACW	1 cut(s)	186
TfiI	GAWTC	2 cut(s)	144, 445
TseI	GCWGC	4 cut(s)	62, 133, 298, 344
TspDTI	ATGAA	2 cut(s)	94, 122
XmnI	GAANNNNTTC	1 cut(s)	444
XspI	CTAG	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.