Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

14391734 .. 14394472

Gene Structure 2739 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g23030.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTCTAGTGAACGTTGCTGCTCTCCAGTTTATGTCTTCTGCTCTTTTAGGGAGTCGTTCTGCAACTTCCAACTTTCAAGTTTTGCAGACTATAAGAAAATTCTCCATGAAGTCGGTAGTAATGAGAGCGAGGCAGCCTGCCAGAACTGAAAGTGCAAAAACTCGAAACAGAAGAATGCAGAAGAAGTACAACGGCACGCCCACGAAGCCGAGGCTTTCGGTCTTCTGTTCAGACAAACAATTGTATGCTATGCTGGTAGATGACCAGAACAACAAGTGTTTGTTTTATGGAAGCACACTGCAGAAATCTATCCGTCAGGATCCCAATTGTAGTACCGCTGAAGCTGCTAAACGCGTTGGCGAGAAGTTGATTCAAGTCTGCAGTGATCTCAACATAGGTGAAATATCGTCTTATGATCGCAATGGCTTTGCTACCGGGGAAAGGATTCAAGCATTTGAGATTGCAATTTCAGAATATGGGTTCTTGTCGAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

166

Amino Acids

18.5

Weight (kDa)

9.92

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	60 - 172	3.4e-18	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	357
AciI	CCGC	1 cut(s)	339
AclI	AACGTT	1 cut(s)	15
AclWI	GGATC	2 cut(s)	317, 330
AcsI	RAATTY	1 cut(s)	101
AcuI	CTGAAG	1 cut(s)	363
AfaI	GTAC	2 cut(s)	191, 337
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	1 cut(s)	355
AgsI	TTSAA	3 cut(s)	80, 377, 452
AluBI	AGCT	1 cut(s)	347
AluI	AGCT	1 cut(s)	347
AlwI	GGATC	2 cut(s)	317, 330
ApeKI	GCWGC	3 cut(s)	20, 136, 347
ApoI	RAATTY	1 cut(s)	101
Asp700I	GAANNNNTTC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	439
AsuHPI	GGTGA	1 cut(s)	413
BamHI	GGATCC	1 cut(s)	322
BbsI	GAAGAC	2 cut(s)	30, 217
BbvI	GCAGC	3 cut(s)	7, 148, 334
BceAI	ACGGC	1 cut(s)	211
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	1 cut(s)	8
BfmI	CTRYAG	2 cut(s)	302, 382
BisI	GCNGC	3 cut(s)	21, 137, 348
BlsI	GCNGC	3 cut(s)	22, 138, 349
Bme1390I	CCNGG	1 cut(s)	439
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	439
BpiI	GAAGAC	2 cut(s)	30, 217
BpmI	CTGGAG	1 cut(s)	11
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	212, 438
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	1 cut(s)	430
BseDI	CCNNGG	2 cut(s)	212, 438
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMI	GCAATG	1 cut(s)	430
BseNI	ACTGG	1 cut(s)	28
BseXI	GCAGC	3 cut(s)	7, 148, 334
Bsh1236I	CGCG	1 cut(s)	357
BsiSI	CCGG	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmI	GAATGC	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	322, 388, 418
BspACI	CCGC	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	357
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	2 cut(s)	306, 386
BspPI	GGATC	2 cut(s)	317, 330
BsrDI	GCAATG	1 cut(s)	430
BsrI	ACTGG	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	212, 438
BssMI	GATC	3 cut(s)	322, 388, 418
BstC8I	GCNNGC	2 cut(s)	141, 200
BstFNI	CGCG	1 cut(s)	357
BstKTI	GATC	3 cut(s)	325, 391, 421
BstMBI	GATC	3 cut(s)	322, 388, 418
BstMWI	GCNNNNNNNGC	2 cut(s)	208, 347
BstSCI	CCNGG	1 cut(s)	437
BstSFI	CTRYAG	2 cut(s)	302, 382
BstUI	CGCG	1 cut(s)	357
BstV1I	GCAGC	3 cut(s)	7, 148, 334
BstV2I	GAAGAC	2 cut(s)	30, 217
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BtsI	GCAGTG	2 cut(s)	299, 391
BtsIMutI	CAGTG	2 cut(s)	299, 391
Cac8I	GCNNGC	2 cut(s)	141, 200
Csp6I	GTAC	2 cut(s)	190, 336
CviAII	CATG	1 cut(s)	109
CviJI	RGCY	6 cut(s)	5, 139, 211, 217, 347, 429
CviKI_1	RGCY	6 cut(s)	5, 139, 211, 217, 347, 429
CviQI	GTAC	2 cut(s)	190, 336
DpnI	GATC	3 cut(s)	324, 390, 420
DpnII	GATC	3 cut(s)	322, 388, 418
Eco57I	CTGAAG	1 cut(s)	363
FaeI	CATG	1 cut(s)	112
FaiI	YATR	9 cut(s)	35, 95, 110, 249, 254, 291, 398, 417, 480
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	21, 137, 348
Fsp4HI	GCNGC	3 cut(s)	21, 137, 348
FspBI	CTAG	1 cut(s)	8
GluI	GCNGC	3 cut(s)	21, 137, 348
GsuI	CTGGAG	1 cut(s)	11
HapII	CCGG	1 cut(s)	438
Hin1II	CATG	1 cut(s)	112
HinfI	GANTC	3 cut(s)	55, 373, 448
HpaII	CCGG	1 cut(s)	438
HphI	GGTGA	1 cut(s)	413
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	2 cut(s)	235, 475
Hpy188III	TCNNGA	2 cut(s)	320, 492
Hpy8I	GTNNAC	1 cut(s)	13
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	7 cut(s)	65, 88, 158, 181, 304, 384, 467
HpyF10VI	GCNNNNNNNGC	2 cut(s)	208, 347
HpySE526I	ACGT	1 cut(s)	15
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	322, 388, 418
LpnPI	CCDG	7 cut(s)	41, 153, 157, 242, 281, 305, 451
Lsp1109I	GCAGC	3 cut(s)	7, 148, 334
MaeI	CTAG	1 cut(s)	8
MaeII	ACGT	1 cut(s)	15
MalI	GATC	3 cut(s)	324, 390, 420
MboI	GATC	3 cut(s)	322, 388, 418
MboII	GAAGA	4 cut(s)	30, 186, 196, 217
MfeI	CAATTG	2 cut(s)	242, 328
MflI	RGATCY	1 cut(s)	322
MluCI	AATT	4 cut(s)	101, 242, 328, 468
MluI	ACGCGT	1 cut(s)	355
MlyI	GAGTC	1 cut(s)	64
MmeI	TCCRAC	1 cut(s)	96
MnlI	CCTC	2 cut(s)	126, 207
MroXI	GAANNNNTTC	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	1 cut(s)	439
MunI	CAATTG	2 cut(s)	242, 328
Mva1269I	GAATGC	1 cut(s)	183
MvnI	CGCG	1 cut(s)	357
MwoI	GCNNNNNNNGC	2 cut(s)	208, 347
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	3 cut(s)	322, 388, 418
NlaIII	CATG	1 cut(s)	112
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	237
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	373, 448
PkrI	GCNGC	3 cut(s)	22, 138, 349
PleI	GAGTC	1 cut(s)	63
PpsI	GAGTC	1 cut(s)	63
Psp1406I	AACGTT	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	2 cut(s)	306, 386
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	191, 337
RsaNI	GTAC	2 cut(s)	190, 336
SatI	GCNGC	3 cut(s)	21, 137, 348
Sau3AI	GATC	3 cut(s)	322, 388, 418
SchI	GAGTC	1 cut(s)	64
ScrFI	CCNGG	1 cut(s)	439
SetI	ASST	3 cut(s)	18, 349, 403
SfcI	CTRYAG	2 cut(s)	302, 382
Sse9I	AATT	4 cut(s)	101, 242, 328, 468
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	8
StyD4I	CCNGG	1 cut(s)	437
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	166, 491
TaqII	GACCGA	1 cut(s)	211
TasI	AATT	4 cut(s)	101, 242, 328, 468
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	373, 448
TscAI	CASTG	2 cut(s)	306, 391
TseI	GCWGC	3 cut(s)	20, 136, 347
TspDTI	ATGAA	1 cut(s)	125
TspGWI	ACGGA	1 cut(s)	305
TspRI	CASTG	2 cut(s)	306, 391
XapI	RAATTY	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.