Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

53870746 .. 53872368

Gene Structure 1623 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG383600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCATTCTTGTAATTACATTCCTTTGGGTTTTCGTAACAACGCATTTCTATTCCTCTGGAGTCATGGTTGTATACTTCTTGATCAGTACAATGGCACGCCTAAGAAGCCGAGGCTTTCAGTATTCTGTTCAGACAAACAATTGTATGCTATGCTGGTAGATGACCAAAACAAGAAGTGTTTGTTTTATGGAAGCACTCTGCAGAAATCTATTCGCCAGGATCCCCACTGTAGTACCCCTGAAGCTGCAAAACGTGTTGGCGAGGAGTTAATCAAGGCCTGCAATGATCTCAACATAGGCGAAATATCGTCTTATGATCGCAATGGGTTTGCTACTGGGGAAAGGATTCATGCATTTGAGATTGCAATTTCAGAATACGGGTTCTTGTCAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

131

Amino Acids

14.89

Weight (kDa)

7.61

Isoelectric Point (pI)

46.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	30 - 127	5.1e-14	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	73
AclWI	GGATC	2 cut(s)	215, 228
AcuI	CTGAAG	1 cut(s)	261
AfaI	GTAC	2 cut(s)	89, 235
AflIII	ACRYGT	1 cut(s)	253
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	245
AluI	AGCT	1 cut(s)	245
AlwI	GGATC	2 cut(s)	215, 228
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	245
Asp700I	GAANNNNTTC	1 cut(s)	345
BaeI	ACNNNNGTAYC	2 cut(s)	217, 250
BamHI	GGATCC	1 cut(s)	220
BbvI	GCAGC	1 cut(s)	232
BciT130I	CCWGG	1 cut(s)	218
BclI	TGATCA	1 cut(s)	82
BfmI	CTRYAG	2 cut(s)	200, 229
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	1 cut(s)	218
BmiI	GGNNCC	1 cut(s)	222
BmrFI	CCNGG	1 cut(s)	218
BmrI	ACTGGG	1 cut(s)	345
BmuI	ACTGGG	1 cut(s)	345
BpmI	CTGGAG	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	110
BsaXI	ACNNNNNCTCC	2 cut(s)	52, 82
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	289, 328
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	110
BseMI	GCAATG	2 cut(s)	289, 328
BseNI	ACTGG	1 cut(s)	340
BseRI	GAGGAG	1 cut(s)	278
BseXI	GCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	278
BsmI	GAATGC	1 cut(s)	4
BsnI	GGCC	1 cut(s)	278
Bsp143I	GATC	4 cut(s)	82, 220, 286, 316
BspANI	GGCC	1 cut(s)	278
BspLI	GGNNCC	1 cut(s)	222
BspMAI	CTGCAG	1 cut(s)	204
BspPI	GGATC	2 cut(s)	215, 228
BsrDI	GCAATG	2 cut(s)	289, 328
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	110
BssMI	GATC	4 cut(s)	82, 220, 286, 316
BssNAI	GTATAC	1 cut(s)	74
Bst1107I	GTATAC	1 cut(s)	74
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	230
BstC8I	GCNNGC	2 cut(s)	98, 280
BstDEI	CTNAG	1 cut(s)	102
BstKTI	GATC	4 cut(s)	85, 223, 289, 319
BstMBI	GATC	4 cut(s)	82, 220, 286, 316
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNI	CCWGG	1 cut(s)	218
BstSCI	CCNGG	1 cut(s)	216
BstSFI	CTRYAG	2 cut(s)	200, 229
BstV1I	GCAGC	1 cut(s)	232
BstX2I	RGATCY	1 cut(s)	220
BstYI	RGATCY	1 cut(s)	220
BstZ17I	GTATAC	1 cut(s)	74
BsuRI	GGCC	1 cut(s)	278
BtsIMutI	CAGTG	1 cut(s)	226
Cac8I	GCNNGC	2 cut(s)	98, 280
Csp6I	GTAC	2 cut(s)	88, 234
CviAII	CATG	2 cut(s)	65, 350
CviJI	RGCY	4 cut(s)	109, 115, 245, 278
CviKI_1	RGCY	4 cut(s)	109, 115, 245, 278
CviQI	GTAC	2 cut(s)	88, 234
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	4 cut(s)	84, 222, 288, 318
DpnII	GATC	4 cut(s)	82, 220, 286, 316
Eco147I	AGGCCT	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	261
EcoRII	CCWGG	1 cut(s)	216
EcoT22I	ATGCAT	2 cut(s)	6, 355
FaeI	CATG	2 cut(s)	68, 353
FaiI	YATR	8 cut(s)	66, 74, 147, 152, 189, 296, 315, 351
FatI	CATG	2 cut(s)	64, 349
FbaI	TGATCA	1 cut(s)	82
FblI	GTMKAC	1 cut(s)	73
Fnu4HI	GCNGC	1 cut(s)	246
Fsp4HI	GCNGC	1 cut(s)	246
GluI	GCNGC	1 cut(s)	246
GsuI	CTGGAG	1 cut(s)	79
HaeIII	GGCC	1 cut(s)	278
Hin1II	CATG	2 cut(s)	68, 353
HinfI	GANTC	2 cut(s)	61, 346
Hpy166II	GTNNAC	1 cut(s)	74
Hpy188I	TCNGA	2 cut(s)	133, 373
Hpy188III	TCNNGA	3 cut(s)	58, 80, 390
Hpy8I	GTNNAC	1 cut(s)	74
HpyCH4III	ACNGT	1 cut(s)	230
HpyCH4IV	ACGT	1 cut(s)	253
HpyCH4V	TGCA	6 cut(s)	4, 202, 248, 282, 353, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	1 cut(s)	102
HpySE526I	ACGT	1 cut(s)	253
Hsp92II	CATG	2 cut(s)	68, 353
Ksp22I	TGATCA	1 cut(s)	82
Kzo9I	GATC	4 cut(s)	82, 220, 286, 316
LpnPI	CCDG	7 cut(s)	43, 140, 203, 230, 252, 292, 321
Lsp1109I	GCAGC	1 cut(s)	232
MaeII	ACGT	1 cut(s)	253
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	4 cut(s)	84, 222, 288, 318
MboI	GATC	4 cut(s)	82, 220, 286, 316
MfeI	CAATTG	1 cut(s)	140
MflI	RGATCY	1 cut(s)	220
MluCI	AATT	3 cut(s)	13, 140, 366
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	65, 105, 256
Mph1103I	ATGCAT	2 cut(s)	6, 355
MroXI	GAANNNNTTC	1 cut(s)	345
MseI	TTAA	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	218
MunI	CAATTG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	4
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	4 cut(s)	82, 220, 286, 316
NlaIII	CATG	2 cut(s)	68, 353
NlaIV	GGNNCC	1 cut(s)	222
NmeAIII	GCCGAG	1 cut(s)	135
NsiI	ATGCAT	2 cut(s)	6, 355
PceI	AGGCCT	1 cut(s)	278
PctI	GAATGC	1 cut(s)	4
PdmI	GAANNNNTTC	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	346
PkrI	GCNGC	1 cut(s)	247
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	222
PstI	CTGCAG	1 cut(s)	204
PsuI	RGATCY	1 cut(s)	220
RsaI	GTAC	2 cut(s)	89, 235
RsaNI	GTAC	2 cut(s)	88, 234
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	4 cut(s)	82, 220, 286, 316
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	218
SetI	ASST	2 cut(s)	247, 256
SfcI	CTRYAG	2 cut(s)	200, 229
Sse9I	AATT	3 cut(s)	13, 140, 366
SseBI	AGGCCT	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	230
TaiI	ACGT	1 cut(s)	256
TasI	AATT	3 cut(s)	13, 140, 366
TatI	WGTACW	1 cut(s)	87
TfiI	GAWTC	1 cut(s)	346
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TscAI	CASTG	1 cut(s)	233
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	338
TspRI	CASTG	1 cut(s)	233
XmiI	GTMKAC	1 cut(s)	73
XmnI	GAANNNNTTC	1 cut(s)	345
Zsp2I	ATGCAT	2 cut(s)	6, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.