Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Forward (+)

3989049 .. 3989866

Gene Structure 818 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g06230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

ATGGCCCTTACGAATGCTGCTGCTCTCAAATTCTCGACTTCTGCATTTTTGGGTCTCCGTTCGGCAACTTCCAACTTTCAAATTCAACCCATGCAGCAGACGAGAAGAACAAGATTCTCGGCGAAGCCGTTAGTTATGAGAGCGAGGGGGAATGCCAGGACGGATAGTGCGAAAACTCGAAACAGAAGAATGCAGAAGAAGTACAATGGCACGTCTATGAGACCGAGGCTTTCGGTGTTCTGTTCAGATAAACAGTTGTATGCAATGCTGGTAGATGACCAAAACAAGAACTGTTTGTTTTACGGAAGCACCCTGCAGAAATCTATTCGTCGGAATGCCGATTGTAGTACCAGCGAAGCTGCTAAACTCCTGGGCGAGGAGCTCGTCAAGGCCTGCAACAATCTCAACATACACGAAATATCATCGTATGATCGCAATGGTTTTGCTACCGGGGAAAGGATTCAGGCTTTCGAGATCGCAATTTCTCGGCATGGTTTCTTGCCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

170

Amino Acids

19.07

Weight (kDa)

10.49

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	29, 81
AfaI	GTAC	2 cut(s)	203, 349
AfiI	CCNNNNNNNGG	2 cut(s)	376, 456
AgsI	TTSAA	2 cut(s)	80, 86
AjiI	CACGTC	1 cut(s)	213
AjnI	CCWGG	2 cut(s)	155, 369
AluBI	AGCT	2 cut(s)	359, 382
AluI	AGCT	2 cut(s)	359, 382
Alw21I	GWGCWC	1 cut(s)	384
Alw26I	GTCTC	2 cut(s)	59, 214
AoxI	GGCC	2 cut(s)	3, 390
ApeKI	GCWGC	4 cut(s)	17, 20, 94, 359
ApoI	RAATTY	2 cut(s)	29, 81
Asp700I	GAANNNNTTC	1 cut(s)	459
AspS9I	GGNCC	1 cut(s)	4
AsuC2I	CCSGG	1 cut(s)	451
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	384
BbvI	GCAGC	4 cut(s)	4, 7, 106, 346
BceAI	ACGGC	1 cut(s)	112
BciT130I	CCWGG	2 cut(s)	157, 371
BcnI	CCSGG	1 cut(s)	451
BcoDI	GTCTC	2 cut(s)	59, 214
BfmI	CTRYAG	1 cut(s)	314
BisI	GCNGC	4 cut(s)	18, 21, 95, 360
BlsI	GCNGC	4 cut(s)	19, 22, 96, 361
Bme1390I	CCNGG	3 cut(s)	157, 371, 451
BmgBI	CACGTC	1 cut(s)	213
BmgT120I	GGNCC	1 cut(s)	4
BmrFI	CCNGG	3 cut(s)	157, 371, 451
BpuMI	CCSGG	1 cut(s)	451
BsaI	GGTCTC	2 cut(s)	59, 214
BsaJI	CCNNGG	3 cut(s)	224, 370, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	376, 456
Bse3DI	GCAATG	2 cut(s)	270, 442
BseBI	CCWGG	2 cut(s)	157, 371
BseDI	CCNNGG	3 cut(s)	224, 370, 450
BseLI	CCNNNNNNNGG	2 cut(s)	376, 456
BseMI	GCAATG	2 cut(s)	270, 442
BseRI	GAGGAG	1 cut(s)	392
BseXI	GCAGC	4 cut(s)	4, 7, 106, 346
BshFI	GGCC	2 cut(s)	5, 392
BsiHKAI	GWGCWC	1 cut(s)	384
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	2 cut(s)	376, 456
BsmAI	GTCTC	2 cut(s)	59, 214
BsmI	GAATGC	4 cut(s)	19, 157, 195, 340
BsnI	GGCC	2 cut(s)	5, 392
Bso31I	GGTCTC	2 cut(s)	59, 214
Bsp1286I	GDGCHC	1 cut(s)	384
Bsp143I	GATC	2 cut(s)	430, 474
BspANI	GGCC	2 cut(s)	5, 392
BspMAI	CTGCAG	1 cut(s)	318
BspTNI	GGTCTC	2 cut(s)	59, 214
BsrDI	GCAATG	2 cut(s)	270, 442
BssECI	CCNNGG	3 cut(s)	224, 370, 450
BssMI	GATC	2 cut(s)	430, 474
Bst2UI	CCWGG	2 cut(s)	157, 371
Bst4CI	ACNGT	2 cut(s)	255, 293
BstC8I	GCNNGC	1 cut(s)	394
BstENI	CCTNNNNNAGG	1 cut(s)	374
BstKTI	GATC	2 cut(s)	433, 477
BstMAI	GTCTC	2 cut(s)	59, 214
BstMBI	GATC	2 cut(s)	430, 474
BstNI	CCWGG	2 cut(s)	157, 371
BstSCI	CCNGG	3 cut(s)	155, 369, 449
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	4, 7, 106, 346
BsuRI	GGCC	2 cut(s)	5, 392
BtrI	CACGTC	1 cut(s)	213
Cac8I	GCNNGC	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	202, 348
CviAII	CATG	2 cut(s)	91, 491
CviJI	RGCY	7 cut(s)	5, 127, 229, 359, 382, 392, 467
CviKI_1	RGCY	7 cut(s)	5, 127, 229, 359, 382, 392, 467
CviQI	GTAC	2 cut(s)	202, 348
DpnI	GATC	2 cut(s)	432, 476
DpnII	GATC	2 cut(s)	430, 474
Ecl136II	GAGCTC	1 cut(s)	382
Eco147I	AGGCCT	1 cut(s)	392
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	2 cut(s)	59, 214
Eco53kI	GAGCTC	1 cut(s)	382
EcoICRI	GAGCTC	1 cut(s)	382
EcoNI	CCTNNNNNAGG	1 cut(s)	374
EcoRII	CCWGG	2 cut(s)	155, 369
EcoT38I	GRGCYC	1 cut(s)	384
FaeI	CATG	2 cut(s)	94, 494
FaiI	YATR	7 cut(s)	92, 137, 218, 261, 410, 429, 492
FatI	CATG	2 cut(s)	90, 490
Fnu4HI	GCNGC	4 cut(s)	18, 21, 95, 360
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	4 cut(s)	18, 21, 95, 360
GluI	GCNGC	4 cut(s)	18, 21, 95, 360
HaeIII	GGCC	2 cut(s)	5, 392
HapII	CCGG	1 cut(s)	450
Hin1II	CATG	2 cut(s)	94, 494
HinfI	GANTC	2 cut(s)	114, 460
HpaII	CCGG	1 cut(s)	450
Hpy188I	TCNGA	2 cut(s)	247, 333
Hpy188III	TCNNGA	2 cut(s)	34, 472
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	255, 293
HpyCH4IV	ACGT	1 cut(s)	212
HpyCH4V	TGCA	6 cut(s)	44, 94, 193, 263, 316, 396
HpySE526I	ACGT	1 cut(s)	212
Hsp92II	CATG	2 cut(s)	94, 494
Kzo9I	GATC	2 cut(s)	430, 474
LmnI	GCTCC	1 cut(s)	379
Lsp1109I	GCAGC	4 cut(s)	4, 7, 106, 346
MaeII	ACGT	1 cut(s)	212
MalI	GATC	2 cut(s)	432, 476
MboI	GATC	2 cut(s)	430, 474
MboII	GAAGA	3 cut(s)	117, 198, 208
MhlI	GDGCHC	1 cut(s)	384
MluCI	AATT	3 cut(s)	29, 81, 480
MmeI	TCCRAC	2 cut(s)	96, 311
MnlI	CCTC	3 cut(s)	138, 219, 370
MroXI	GAANNNNTTC	1 cut(s)	459
MslI	CAYNNNNRTG	1 cut(s)	215
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	3 cut(s)	157, 371, 451
Mva1269I	GAATGC	4 cut(s)	19, 157, 195, 340
MvaI	CCWGG	2 cut(s)	157, 371
NciI	CCSGG	1 cut(s)	451
NdeII	GATC	2 cut(s)	430, 474
NlaIII	CATG	2 cut(s)	94, 494
NmeAIII	GCCGAG	2 cut(s)	98, 466
PceI	AGGCCT	1 cut(s)	392
PcsI	WCGNNNNNNNCGW	2 cut(s)	125, 167
PctI	GAATGC	4 cut(s)	19, 157, 195, 340
PdmI	GAANNNNTTC	1 cut(s)	459
PfeI	GAWTC	2 cut(s)	114, 460
PkrI	GCNGC	4 cut(s)	19, 22, 96, 361
Psp124BI	GAGCTC	1 cut(s)	384
Psp6I	CCWGG	2 cut(s)	155, 369
PspGI	CCWGG	2 cut(s)	155, 369
PspPI	GGNCC	1 cut(s)	4
PstI	CTGCAG	1 cut(s)	318
RsaI	GTAC	2 cut(s)	203, 349
RsaNI	GTAC	2 cut(s)	202, 348
RseI	CAYNNNNRTG	1 cut(s)	215
SacI	GAGCTC	1 cut(s)	384
SatI	GCNGC	4 cut(s)	18, 21, 95, 360
Sau3AI	GATC	2 cut(s)	430, 474
Sau96I	GGNCC	1 cut(s)	4
ScrFI	CCNGG	3 cut(s)	157, 371, 451
SduI	GDGCHC	1 cut(s)	384
SetI	ASST	3 cut(s)	215, 361, 384
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	215
Sse9I	AATT	3 cut(s)	29, 81, 480
SseBI	AGGCCT	1 cut(s)	392
SstI	GAGCTC	1 cut(s)	384
StuI	AGGCCT	1 cut(s)	392
StyD4I	CCNGG	3 cut(s)	155, 369, 449
TaaI	ACNGT	2 cut(s)	255, 293
TaiI	ACGT	1 cut(s)	215
TaqI	TCGA	3 cut(s)	35, 178, 471
TaqII	GACCGA	1 cut(s)	238
TasI	AATT	3 cut(s)	29, 81, 480
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	2 cut(s)	114, 460
TseI	GCWGC	4 cut(s)	17, 20, 94, 359
TspGWI	ACGGA	3 cut(s)	47, 176, 318
XagI	CCTNNNNNAGG	1 cut(s)	374
XapI	RAATTY	2 cut(s)	29, 81
XmnI	GAANNNNTTC	1 cut(s)	459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.