Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Reverse (-)

5501873 .. 5504320

Gene Structure 2448 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006245

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCTAGTGAATGTTGCTGCTCTCCAGTTTACAACTTCTGCCCTTTTTGGGACTCGTTCTGCAACTTCAAACTTTCAGGTCTTGCAGACTAAGAGAAATTTCTCCATGAAGCCGGTAGTAATGAGAGCGAGGCAGCATGCCAGAACCGAAAGTGCGAAAACTCTAAACAGAAGAATGCAGAAGAAGTACAATGGCACGCCTAAGAAGCCGAGGCTTTCAGTATTCTGTTCAGACAAACAATTGTATGCTATGCTGGTAGATGACCAAAACAAGAAGTGTTTGTTTTATGGAAGCACTCTGCAGAAATCTATTCGCCAGGATCCCCATTGTAGTACCGCTGAAGCTGCAAAACGTGTTGGCGAGGAGCTAATCAAGGCCTGCAATGATCTCAACATAGGCGAAATATCGTCTTATGATCGCAATGGGTTTGCTACCGGGGAAAGGATTCATGCATTTGAGATTGCAATTTCAGAATACGGCTCTTCAATTGTGACCCAAGACGAGTTGAAGAAAATCGCCTACAAGGTCATCGCGTCCAGCATGATCTTTGGCCTGGGCTCAGGCTCCACCGTCAAACACGTTGTGGATCGCTTGGGCGAGCTTTTACAACGGGGAAAAGGGAAGGTTTTGGAATTGAAGGAAGAGTTGGACTCTAAACTTGTTAGTGTCCTCAAGTCCTTGGAGTTGGATGTGGAGATAAGATCAAAAGAATCAATTGAGCAAACTTTGCCCTCAGAAGTCAAGGCCAAGATTGAAGTCAAGGCCAGATTTTTTTTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

262

Amino Acids

29.21

Weight (kDa)

9.53

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L18p	PF00861	49 - 161	4.6e-16	Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	536
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	3 cut(s)	317, 330, 597
AcsI	RAATTY	1 cut(s)	100
AcuI	CTGAAG	1 cut(s)	363
AdeI	CACNNNGTG	1 cut(s)	586
AfaI	GTAC	2 cut(s)	191, 337
AfiI	CCNNNNNNNGG	2 cut(s)	51, 444
AflIII	ACRYGT	2 cut(s)	355, 580
AgsI	TTSAA	5 cut(s)	72, 489, 511, 640, 758
AjnI	CCWGG	2 cut(s)	318, 555
AjuI	GAANNNNNNNTTGG	2 cut(s)	632, 664
AluBI	AGCT	3 cut(s)	347, 370, 604
AluI	AGCT	3 cut(s)	347, 370, 604
AlwI	GGATC	3 cut(s)	317, 330, 597
AoxI	GGCC	4 cut(s)	378, 553, 747, 765
ApeKI	GCWGC	3 cut(s)	20, 136, 347
ApoI	RAATTY	1 cut(s)	100
Asp700I	GAANNNNTTC	1 cut(s)	447
AsuC2I	CCSGG	1 cut(s)	439
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	1 cut(s)	563
BbvI	GCAGC	3 cut(s)	7, 148, 334
BceAI	ACGGC	1 cut(s)	496
BciT130I	CCWGG	2 cut(s)	320, 557
BcnI	CCSGG	1 cut(s)	439
BfaI	CTAG	2 cut(s)	8, 784
BfmI	CTRYAG	1 cut(s)	302
BisI	GCNGC	3 cut(s)	21, 137, 348
BlsI	GCNGC	3 cut(s)	22, 138, 349
Bme1390I	CCNGG	3 cut(s)	320, 439, 557
BmiI	GGNNCC	2 cut(s)	324, 568
BmrFI	CCNGG	3 cut(s)	320, 439, 557
BplI	GAGNNNNNCTC	2 cut(s)	638, 670
BpmI	CTGGAG	1 cut(s)	11
Bpu10I	CCTNAGC	1 cut(s)	562
BpuEI	CTTGAG	1 cut(s)	659
BpuMI	CCSGG	1 cut(s)	439
BsaJI	CCNNGG	4 cut(s)	212, 438, 556, 681
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 444
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	1 cut(s)	28
Bse3DI	GCAATG	2 cut(s)	391, 430
BseBI	CCWGG	2 cut(s)	320, 557
BseDI	CCNNGG	4 cut(s)	212, 438, 556, 681
BseGI	GGATG	1 cut(s)	697
BseLI	CCNNNNNNNGG	2 cut(s)	51, 444
BseMI	GCAATG	2 cut(s)	391, 430
BseMII	CTCAG	2 cut(s)	576, 750
BseNI	ACTGG	1 cut(s)	28
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	3 cut(s)	7, 148, 334
Bsh1236I	CGCG	1 cut(s)	536
BshFI	GGCC	4 cut(s)	380, 555, 749, 767
BsiSI	CCGG	2 cut(s)	116, 438
BslFI	GGGAC	1 cut(s)	67
BslI	CCNNNNNNNGG	2 cut(s)	51, 444
BsmFI	GGGAC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	183
BsnI	GGCC	4 cut(s)	380, 555, 749, 767
Bsp1286I	GDGCHC	1 cut(s)	563
Bsp143I	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
BspACI	CCGC	1 cut(s)	339
BspANI	GGCC	4 cut(s)	380, 555, 749, 767
BspCNI	CTCAG	2 cut(s)	575, 749
BspFNI	CGCG	1 cut(s)	536
BspLI	GGNNCC	2 cut(s)	324, 568
BspMAI	CTGCAG	1 cut(s)	306
BspPI	GGATC	3 cut(s)	317, 330, 597
BspQI	GCTCTTC	1 cut(s)	490
BsrDI	GCAATG	2 cut(s)	391, 430
BsrFI	RCCGGY	1 cut(s)	115
BsrI	ACTGG	1 cut(s)	28
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	4 cut(s)	212, 438, 556, 681
BssMI	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
BssT1I	CCWWGG	1 cut(s)	681
Bst2UI	CCWGG	2 cut(s)	320, 557
Bst4CI	ACNGT	1 cut(s)	574
Bst6I	CTCTTC	2 cut(s)	490, 639
BstAPI	GCANNNNNTGC	1 cut(s)	730
BstC8I	GCNNGC	4 cut(s)	141, 200, 382, 602
BstDEI	CTNAG	4 cut(s)	93, 204, 562, 736
BstF5I	GGATG	1 cut(s)	697
BstFNI	CGCG	1 cut(s)	536
BstKTI	GATC	6 cut(s)	325, 391, 421, 549, 592, 707
BstMBI	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
BstMWI	GCNNNNNNNGC	3 cut(s)	208, 347, 730
BstNI	CCWGG	2 cut(s)	320, 557
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	3 cut(s)	318, 437, 555
BstSFI	CTRYAG	1 cut(s)	302
BstUI	CGCG	1 cut(s)	536
BstV1I	GCAGC	3 cut(s)	7, 148, 334
BstX2I	RGATCY	1 cut(s)	322
BstYI	RGATCY	1 cut(s)	322
BsuRI	GGCC	4 cut(s)	380, 555, 749, 767
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	697
Cac8I	GCNNGC	4 cut(s)	141, 200, 382, 602
Cfr10I	RCCGGY	1 cut(s)	115
CseI	GACGC	1 cut(s)	525
Csp6I	GTAC	2 cut(s)	190, 336
CviAII	CATG	4 cut(s)	109, 140, 452, 544
CviQI	GTAC	2 cut(s)	190, 336
DdeI	CTNAG	4 cut(s)	93, 204, 562, 736
DpnI	GATC	6 cut(s)	324, 390, 420, 548, 591, 706
DpnII	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
DraIII	CACNNNGTG	1 cut(s)	586
Eam1104I	CTCTTC	2 cut(s)	490, 639
EarI	CTCTTC	2 cut(s)	490, 639
Eco130I	CCWWGG	1 cut(s)	681
Eco147I	AGGCCT	1 cut(s)	380
Eco24I	GRGCYC	1 cut(s)	563
Eco57I	CTGAAG	1 cut(s)	363
EcoRII	CCWGG	2 cut(s)	318, 555
EcoT14I	CCWWGG	1 cut(s)	681
EcoT22I	ATGCAT	1 cut(s)	457
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	681
FaeI	CATG	4 cut(s)	112, 143, 455, 547
FaiI	YATR	9 cut(s)	110, 141, 249, 254, 291, 398, 417, 453, 545
FaqI	GGGAC	1 cut(s)	67
FatI	CATG	4 cut(s)	108, 139, 451, 543
Fnu4HI	GCNGC	3 cut(s)	21, 137, 348
FokI	GGATG	1 cut(s)	704
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	3 cut(s)	21, 137, 348
FspBI	CTAG	2 cut(s)	8, 784
GluI	GCNGC	3 cut(s)	21, 137, 348
GsuI	CTGGAG	1 cut(s)	11
HaeIII	GGCC	4 cut(s)	380, 555, 749, 767
HapII	CCGG	2 cut(s)	116, 438
HgaI	GACGC	1 cut(s)	525
Hin1II	CATG	4 cut(s)	112, 143, 455, 547
HinfI	GANTC	4 cut(s)	55, 448, 653, 713
HpaII	CCGG	2 cut(s)	116, 438
Hpy166II	GTNNAC	1 cut(s)	33
Hpy188I	TCNGA	3 cut(s)	235, 475, 739
Hpy8I	GTNNAC	1 cut(s)	33
HpyAV	CCTTC	2 cut(s)	619, 634
HpyCH4III	ACNGT	1 cut(s)	574
HpyCH4IV	ACGT	2 cut(s)	355, 582
HpyCH4V	TGCA	8 cut(s)	65, 88, 181, 304, 350, 384, 455, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	208, 347, 730
HpyF3I	CTNAG	4 cut(s)	93, 204, 562, 736
HpySE526I	ACGT	2 cut(s)	355, 582
Hsp92II	CATG	4 cut(s)	112, 143, 455, 547
Kzo9I	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
LguI	GCTCTTC	1 cut(s)	490
LmnI	GCTCC	2 cut(s)	367, 572
Lsp1109I	GCAGC	3 cut(s)	7, 148, 334
MaeI	CTAG	2 cut(s)	8, 784
MaeII	ACGT	2 cut(s)	355, 582
MaeIII	GTNAC	1 cut(s)	493
MalI	GATC	6 cut(s)	324, 390, 420, 548, 591, 706
MboI	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
MboII	GAAGA	5 cut(s)	186, 196, 477, 523, 656
MfeI	CAATTG	3 cut(s)	242, 489, 717
MflI	RGATCY	1 cut(s)	322
MhlI	GDGCHC	1 cut(s)	563
MluCI	AATT	6 cut(s)	100, 242, 468, 489, 635, 717
MlyI	GAGTC	2 cut(s)	49, 647
MmeI	TCCRAC	2 cut(s)	630, 669
MnlI	CCTC	5 cut(s)	126, 207, 358, 683, 745
Mph1103I	ATGCAT	1 cut(s)	457
MroXI	GAANNNNTTC	1 cut(s)	447
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	2 cut(s)	116, 438
MspR9I	CCNGG	3 cut(s)	320, 439, 557
MunI	CAATTG	3 cut(s)	242, 489, 717
Mva1269I	GAATGC	1 cut(s)	183
MvaI	CCWGG	2 cut(s)	320, 557
MvnI	CGCG	1 cut(s)	536
MwoI	GCNNNNNNNGC	3 cut(s)	208, 347, 730
NciI	CCSGG	1 cut(s)	439
NdeII	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
NlaIII	CATG	4 cut(s)	112, 143, 455, 547
NlaIV	GGNNCC	2 cut(s)	324, 568
NmeAIII	GCCGAG	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	493
NsiI	ATGCAT	1 cut(s)	457
NspI	RCATGY	1 cut(s)	143
PaeI	GCATGC	1 cut(s)	143
PceI	AGGCCT	1 cut(s)	380
PciSI	GCTCTTC	1 cut(s)	490
PctI	GAATGC	1 cut(s)	183
PdmI	GAANNNNTTC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	448, 713
PkrI	GCNGC	3 cut(s)	22, 138, 349
PleI	GAGTC	2 cut(s)	49, 647
PpsI	GAGTC	2 cut(s)	49, 647
Psp6I	CCWGG	2 cut(s)	318, 555
PspGI	CCWGG	2 cut(s)	318, 555
PspN4I	GGNNCC	2 cut(s)	324, 568
PstI	CTGCAG	1 cut(s)	306
PsuI	RGATCY	1 cut(s)	322
RsaI	GTAC	2 cut(s)	191, 337
RsaNI	GTAC	2 cut(s)	190, 336
SapI	GCTCTTC	1 cut(s)	490
SatI	GCNGC	3 cut(s)	21, 137, 348
Sau3AI	GATC	6 cut(s)	322, 388, 418, 546, 589, 704
SchI	GAGTC	2 cut(s)	49, 647
ScrFI	CCNGG	3 cut(s)	320, 439, 557
SduI	GDGCHC	1 cut(s)	563
SetI	ASST	8 cut(s)	84, 349, 358, 372, 531, 585, 606, 630
SfcI	CTRYAG	1 cut(s)	302
SmlI	CTYRAG	1 cut(s)	674
SmoI	CTYRAG	1 cut(s)	674
SphI	GCATGC	1 cut(s)	143
Sse9I	AATT	6 cut(s)	100, 242, 468, 489, 635, 717
SseBI	AGGCCT	1 cut(s)	380
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	2 cut(s)	8, 784
StuI	AGGCCT	1 cut(s)	380
StyD4I	CCNGG	3 cut(s)	318, 437, 555
StyI	CCWWGG	1 cut(s)	681
TaaI	ACNGT	1 cut(s)	574
TaiI	ACGT	2 cut(s)	358, 585
TasI	AATT	6 cut(s)	100, 242, 468, 489, 635, 717
TatI	WGTACW	1 cut(s)	189
TfiI	GAWTC	2 cut(s)	448, 713
TseFI	GTSAC	1 cut(s)	493
TseI	GCWGC	3 cut(s)	20, 136, 347
Tsp45I	GTSAC	1 cut(s)	493
TspDTI	ATGAA	2 cut(s)	125, 440
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	1 cut(s)	143
XmnI	GAANNNNTTC	1 cut(s)	447
XspI	CTAG	2 cut(s)	8, 784
Zsp2I	ATGCAT	1 cut(s)	457

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.