Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010226.1

Orthogroup ID

OG0004153

Physical Location & Seq

Genomic Coordinates Reverse (-)

80494 .. 82444

Gene Structure 1951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010226.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

atgagagcgaggcagcattccagaaccgaaagtgcgaaaactctaaacagaagaatgcagaagaagtacaatggcacgcctaagaagccgaggctttcagtattctgttcagacaaacaattgtatgctatgctggtagatgaccaaaacaagaaatgtttgttttatggaagcaccctgcagaaatctattcgccaggatccccattgtagtacccctgaagctgcaaaacgtgttggcaaggagttaatcaaggcctgcaatgatctcaacataggcgaaatatcgtcttatgatcgcaatgggtttgctaccggggaaaggattcaagcatttgagattgcaatttcagaatacgggtcggcggcgtggctagagacgattgaatcatccggagagatgtcgtggcggtggggatcgcgactagacgggtcgaatggcttaggtcagccagaactcgacgacgaaggtgattggagcagatgtttgtattggactgaaccagatgatgggcctgaagggatctcatgggtgactaccctaatgggcttcgagttgttaggttggggtcctcccctagtccattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0008097 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009941 GO:0019843 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0070013 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L18p

Protein Analysis

195

Amino Acids

22.03

Weight (kDa)

5.97

Isoelectric Point (pI)

45.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14205
fragaria_vesca	FvH4_4g31280 FvH4_4g31280 FvH4_4g31280 FvH4_5g23030 FvH4_5g23030 FvH4_5g23030 FvH4_7g03450
malus_domestica	MD16G1072000.v1.1
prunus_persica	Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1 Prupe.1G275600_v2.0.a1
pyrus_communis	pycom16g06230
rosa_chinensis	RchiOBHm_Chr4g0439701 RchiOBHm_Chr6g0288631
rosa_laevigata	RLG00000006245 RLG00000012387
rosa_multiflora	Rmu_co8507331.1_g000001 Rmu_sc0002058.1_g000002 Rmu_sc0010226.1_g000018 Rmu_ssc0000029.1_g000013
rosa_roxburghii	Rroxscaffold_5G00380640 Rroxscaffold_7G00179970
rosa_rugosa	Rorug04G0320700
rosa_samantha	Rh4AG371800 Rh4BG383600 Rh4CG398300 Rh4DG378400 Rh6AG309100 Rh6CG321700 Rh6DG307500
rosa_wichuraiana	Rw4G031730 Rw6G026690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	509
AccII	CGCG	1 cut(s)	421
AccIII	TCCGGA	1 cut(s)	392
AciI	CCGC	2 cut(s)	365, 409
AclWI	GGATC	4 cut(s)	194, 207, 424, 530
AcuI	CTGAAG	2 cut(s)	240, 537
AfaI	GTAC	2 cut(s)	68, 214
AfiI	CCNNNNNNNGG	2 cut(s)	321, 509
AflIII	ACRYGT	1 cut(s)	232
AgsI	TTSAA	2 cut(s)	329, 386
AjnI	CCWGG	1 cut(s)	195
AluBI	AGCT	1 cut(s)	224
AluI	AGCT	1 cut(s)	224
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	4 cut(s)	194, 207, 424, 530
Aor13HI	TCCGGA	1 cut(s)	392
AoxI	GGCC	2 cut(s)	255, 512
ApeKI	GCWGC	2 cut(s)	13, 224
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	2 cut(s)	512, 569
AsuC2I	CCSGG	1 cut(s)	316
AsuHPI	GGTGA	2 cut(s)	482, 544
AvaII	GGWCC	1 cut(s)	569
BamHI	GGATCC	1 cut(s)	199
BbvI	GCAGC	2 cut(s)	25, 211
BccI	CCATC	1 cut(s)	503
BciT130I	CCWGG	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	316
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	3 cut(s)	374, 425, 578
BfmI	CTRYAG	1 cut(s)	179
BisI	GCNGC	3 cut(s)	14, 225, 366
BlsI	GCNGC	3 cut(s)	15, 226, 367
Bme1390I	CCNGG	2 cut(s)	197, 316
Bme18I	GGWCC	1 cut(s)	569
BmgT120I	GGNCC	2 cut(s)	512, 569
BmiI	GGNNCC	2 cut(s)	201, 570
BmrFI	CCNGG	2 cut(s)	197, 316
Bpu10I	CCTNAGC	1 cut(s)	442
BpuMI	CCSGG	1 cut(s)	316
BsaJI	CCNNGG	2 cut(s)	89, 315
BsaWI	WCCGGW	1 cut(s)	392
BsaXI	ACNNNNNCTCC	2 cut(s)	469, 499
Bsc4I	CCNNNNNNNGG	2 cut(s)	321, 509
Bse3DI	GCAATG	2 cut(s)	268, 307
BseAI	TCCGGA	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	197
BseDI	CCNNGG	2 cut(s)	89, 315
BseGI	GGATG	1 cut(s)	389
BseLI	CCNNNNNNNGG	2 cut(s)	321, 509
BseMI	GCAATG	2 cut(s)	268, 307
BseXI	GCAGC	2 cut(s)	25, 211
Bsh1236I	CGCG	1 cut(s)	421
BshFI	GGCC	2 cut(s)	257, 514
BsiSI	CCGG	2 cut(s)	315, 393
BslI	CCNNNNNNNGG	2 cut(s)	321, 509
BsmAI	GTCTC	1 cut(s)	371
BsmBI	CGTCTC	1 cut(s)	371
BsmI	GAATGC	2 cut(s)	16, 60
BsnI	GGCC	2 cut(s)	257, 514
Bsp13I	TCCGGA	1 cut(s)	392
Bsp143I	GATC	5 cut(s)	199, 265, 295, 416, 522
Bsp68I	TCGCGA	1 cut(s)	421
BspACI	CCGC	2 cut(s)	365, 409
BspANI	GGCC	2 cut(s)	257, 514
BspEI	TCCGGA	1 cut(s)	392
BspFNI	CGCG	1 cut(s)	421
BspLI	GGNNCC	2 cut(s)	201, 570
BspMAI	CTGCAG	1 cut(s)	183
BspPI	GGATC	4 cut(s)	194, 207, 424, 530
BsrDI	GCAATG	2 cut(s)	268, 307
BssECI	CCNNGG	2 cut(s)	89, 315
BssMI	GATC	5 cut(s)	199, 265, 295, 416, 522
Bst2UI	CCWGG	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	77, 259
BstDEI	CTNAG	2 cut(s)	81, 442
BstF5I	GGATG	1 cut(s)	389
BstFNI	CGCG	1 cut(s)	421
BstKTI	GATC	5 cut(s)	202, 268, 298, 419, 525
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	5 cut(s)	199, 265, 295, 416, 522
BstMWI	GCNNNNNNNGC	1 cut(s)	85
BstNI	CCWGG	1 cut(s)	197
BstSCI	CCNGG	2 cut(s)	195, 314
BstSFI	CTRYAG	1 cut(s)	179
BstUI	CGCG	1 cut(s)	421
BstV1I	GCAGC	2 cut(s)	25, 211
BstX2I	RGATCY	2 cut(s)	199, 522
BstYI	RGATCY	2 cut(s)	199, 522
BsuRI	GGCC	2 cut(s)	257, 514
BtsCI	GGATG	1 cut(s)	389
BtuMI	TCGCGA	1 cut(s)	421
Cac8I	GCNNGC	2 cut(s)	77, 259
Cfr13I	GGNCC	2 cut(s)	512, 569
Csp6I	GTAC	2 cut(s)	67, 213
CviAII	CATG	1 cut(s)	528
CviJI	RGCY	9 cut(s)	88, 94, 224, 257, 373, 441, 451, 514, 549
CviKI_1	RGCY	9 cut(s)	88, 94, 224, 257, 373, 441, 451, 514, 549
CviQI	GTAC	2 cut(s)	67, 213
DdeI	CTNAG	2 cut(s)	81, 442
DpnI	GATC	5 cut(s)	201, 267, 297, 418, 524
DpnII	GATC	5 cut(s)	199, 265, 295, 416, 522
Eco147I	AGGCCT	1 cut(s)	257
Eco47I	GGWCC	1 cut(s)	569
Eco57I	CTGAAG	2 cut(s)	240, 537
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRII	CCWGG	1 cut(s)	195
Esp3I	CGTCTC	1 cut(s)	371
FaeI	CATG	1 cut(s)	531
FaiI	YATR	6 cut(s)	126, 131, 168, 275, 294, 529
FatI	CATG	1 cut(s)	527
Fnu4HI	GCNGC	3 cut(s)	14, 225, 366
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	3 cut(s)	14, 225, 366
FspBI	CTAG	3 cut(s)	374, 425, 578
GluI	GCNGC	3 cut(s)	14, 225, 366
HaeIII	GGCC	2 cut(s)	257, 514
HapII	CCGG	2 cut(s)	315, 393
Hin1II	CATG	1 cut(s)	531
HinfI	GANTC	2 cut(s)	325, 386
HpaII	CCGG	2 cut(s)	315, 393
HphI	GGTGA	2 cut(s)	482, 544
Hpy188I	TCNGA	2 cut(s)	112, 352
Hpy188III	TCNNGA	3 cut(s)	21, 393, 420
Hpy99I	CGWCG	2 cut(s)	464, 467
HpyAV	CCTTC	2 cut(s)	461, 512
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	5 cut(s)	58, 181, 227, 261, 344
HpyF10VI	GCNNNNNNNGC	1 cut(s)	85
HpyF3I	CTNAG	2 cut(s)	81, 442
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	1 cut(s)	531
Kpn2I	TCCGGA	1 cut(s)	392
Kzo9I	GATC	5 cut(s)	199, 265, 295, 416, 522
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	25, 211
MaeI	CTAG	3 cut(s)	374, 425, 578
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	1 cut(s)	532
MalI	GATC	5 cut(s)	201, 267, 297, 418, 524
MboI	GATC	5 cut(s)	199, 265, 295, 416, 522
MboII	GAAGA	2 cut(s)	63, 73
MfeI	CAATTG	1 cut(s)	119
MflI	RGATCY	2 cut(s)	199, 522
MluCI	AATT	2 cut(s)	119, 345
MnlI	CCTC	3 cut(s)	3, 84, 582
MroI	TCCGGA	1 cut(s)	392
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	1 cut(s)	248
MspI	CCGG	2 cut(s)	315, 393
MspR9I	CCNGG	2 cut(s)	197, 316
MunI	CAATTG	1 cut(s)	119
Mva1269I	GAATGC	2 cut(s)	16, 60
MvaI	CCWGG	1 cut(s)	197
MvnI	CGCG	1 cut(s)	421
MwoI	GCNNNNNNNGC	1 cut(s)	85
NciI	CCSGG	1 cut(s)	316
NdeII	GATC	5 cut(s)	199, 265, 295, 416, 522
NlaIII	CATG	1 cut(s)	531
NlaIV	GGNNCC	2 cut(s)	201, 570
NmeAIII	GCCGAG	1 cut(s)	114
NmuCI	GTSAC	1 cut(s)	532
NruI	TCGCGA	1 cut(s)	421
PceI	AGGCCT	1 cut(s)	257
PctI	GAATGC	2 cut(s)	16, 60
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	325, 386
PflMI	CCANNNNNTGG	1 cut(s)	509
PkrI	GCNGC	3 cut(s)	15, 226, 367
PpuMI	RGGWCCY	1 cut(s)	569
Psp5II	RGGWCCY	1 cut(s)	569
Psp6I	CCWGG	1 cut(s)	195
PspGI	CCWGG	1 cut(s)	195
PspN4I	GGNNCC	2 cut(s)	201, 570
PspPI	GGNCC	2 cut(s)	512, 569
PspPPI	RGGWCCY	1 cut(s)	569
PstI	CTGCAG	1 cut(s)	183
PsuI	RGATCY	2 cut(s)	199, 522
RruI	TCGCGA	1 cut(s)	421
RsaI	GTAC	2 cut(s)	68, 214
RsaNI	GTAC	2 cut(s)	67, 213
SaqAI	TTAA	1 cut(s)	248
SatI	GCNGC	3 cut(s)	14, 225, 366
Sau3AI	GATC	5 cut(s)	199, 265, 295, 416, 522
Sau96I	GGNCC	2 cut(s)	512, 569
ScrFI	CCNGG	2 cut(s)	197, 316
SetI	ASST	5 cut(s)	226, 235, 448, 472, 565
SfcI	CTRYAG	1 cut(s)	179
SinI	GGWCC	1 cut(s)	569
Sse9I	AATT	2 cut(s)	119, 345
SseBI	AGGCCT	1 cut(s)	257
SsiI	CCGC	2 cut(s)	365, 409
SspMI	CTAG	3 cut(s)	374, 425, 578
StuI	AGGCCT	1 cut(s)	257
StyD4I	CCNGG	2 cut(s)	195, 314
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	3 cut(s)	434, 459, 552
TasI	AATT	2 cut(s)	119, 345
TatI	WGTACW	1 cut(s)	66
TauI	GCSGC	1 cut(s)	368
TfiI	GAWTC	2 cut(s)	325, 386
Tru1I	TTAA	1 cut(s)	248
Tru9I	TTAA	1 cut(s)	248
TseFI	GTSAC	1 cut(s)	532
TseI	GCWGC	2 cut(s)	13, 224
Tsp45I	GTSAC	1 cut(s)	532
Van91I	CCANNNNNTGG	1 cut(s)	509
VpaK11BI	GGWCC	1 cut(s)	569
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	3 cut(s)	374, 425, 578

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.