Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0005687

Physical Location & Seq

Genomic Coordinates Reverse (-)

32906662 .. 32907761

Gene Structure 1100 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g35670.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCACACCAACTGCCGAACCTCCTCCTCCAACTCCACCCAATGCTTCTCTCTTCTTCAATCACTCACCAACACCCCTCAAATTCCACTTCTACCCTCCTCCTTCCCCCTATTCCCCCCAAACCATCCGCCACGTCACCCACACCCCCTCCGATGGCCACCCCGACTCCAACAACTCCATGGTCCCCTCCGCCATCGCCTCCGCCATCCGCAGAGCCTCCACCTCCCCCGTCCATTTCATGCAGCGCATCGAAAACGACCAGAAAAACGGCATCGTTTTGCCTGGCCCCGACTTCCAGCGCCTCTGCATTCACCAGCTCGACCTCTTCCGCCGTATCGTCGATCCCGACGCTCTCCTCTCCGTCAGTCACTTCATCATTCTTTCCAATTTAGCTCAATTTATAACCAGTCTCCTTCCTCCTCGAATGCGGCTTCGAATGAGTCCTTGGATGGCTGCTTCATTCTTCTCCGAATTCGATTCAAATAATCTCTCTGATAAGTTTCTGCCCAGCTATTCTTTTCACAACTGGTACATCGCAGTCAGTGACTCAATATGGAAAATCATTGGCAAGGTTTGGGGATCCAAAGTATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0009987 GO:0010109 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048037 GO:0048038 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0060255 GO:0065007 GO:0071704 GO:0080005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.37

Weight (kDa)

9.2

Isoelectric Point (pI)

52.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67840 AT1G67840
fragaria_vesca	FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g35670
malus_domestica	MD13G1099700.v1.1
prunus_persica	Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1
pyrus_communis	pycom12g22130 pycom13g08710
rosa_chinensis	RchiOBHm_Chr4g0433151
rosa_laevigata	RLG00000006779
rosa_multiflora	Rmu_sc0020880.1_g000001 Rmu_ssc0000295.1_g000015
rosa_roxburghii	Rroxscaffold_5G00374630
rosa_rugosa	Rorug04G0266300 Rorug04G0266400
rosa_samantha	Rh4AG320100 Rh4BG328300 Rh4CG343700 Rh4DG323700
rosa_wichuraiana	Rw4G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	404
AciI	CCGC	6 cut(s)	130, 192, 204, 211, 331, 430
AclWI	GGATC	3 cut(s)	338, 576, 589
AcoI	YGGCCR	1 cut(s)	157
AcsI	RAATTY	2 cut(s)	83, 473
AfaI	GTAC	1 cut(s)	533
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	2 cut(s)	61, 483
AjiI	CACGTC	1 cut(s)	136
AjnI	CCWGG	1 cut(s)	283
AjuI	GAANNNNNNNTTGG	2 cut(s)	430, 462
AluBI	AGCT	3 cut(s)	319, 395, 513
AluI	AGCT	3 cut(s)	319, 395, 513
Alw26I	GTCTC	1 cut(s)	416
AlwI	GGATC	3 cut(s)	338, 576, 589
AoxI	GGCC	2 cut(s)	157, 286
ApeKI	GCWGC	2 cut(s)	244, 455
ApoI	RAATTY	2 cut(s)	83, 473
AspLEI	GCGC	2 cut(s)	249, 303
AspS9I	GGNCC	2 cut(s)	184, 287
AsuHPI	GGTGA	3 cut(s)	60, 130, 305
AsuII	TTCGAA	1 cut(s)	436
AvaII	GGWCC	1 cut(s)	184
BalI	TGGCCA	1 cut(s)	159
BamHI	GGATCC	1 cut(s)	581
BbvI	GCAGC	2 cut(s)	256, 442
BccI	CCATC	5 cut(s)	134, 149, 203, 215, 445
BceAI	ACGGC	2 cut(s)	286, 318
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	416
BfoI	RGCGCY	1 cut(s)	304
BisI	GCNGC	3 cut(s)	245, 431, 456
BlsI	GCNGC	3 cut(s)	246, 432, 457
Bme1390I	CCNGG	1 cut(s)	285
Bme18I	GGWCC	1 cut(s)	184
BmgBI	CACGTC	1 cut(s)	136
BmgT120I	GGNCC	2 cut(s)	184, 287
BmiI	GGNNCC	3 cut(s)	186, 289, 583
BmrFI	CCNGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	258, 282
Bpu14I	TTCGAA	1 cut(s)	436
BsaJI	CCNNGG	2 cut(s)	180, 446
BsaXI	ACNNNNNCTCC	4 cut(s)	134, 152, 164, 182
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
Bse1I	ACTGG	2 cut(s)	408, 533
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	2 cut(s)	180, 446
BseGI	GGATG	3 cut(s)	126, 207, 456
BseLI	CCNNNNNNNGG	1 cut(s)	155
BseNI	ACTGG	2 cut(s)	408, 533
BseRI	GAGGAG	5 cut(s)	15, 18, 90, 347, 411
BseXI	GCAGC	2 cut(s)	256, 442
BseYI	CCCAGC	1 cut(s)	509
BshFI	GGCC	2 cut(s)	159, 288
BslFI	GGGAC	1 cut(s)	170
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	416
BsmFI	GGGAC	1 cut(s)	170
BsmI	GAATGC	2 cut(s)	309, 432
BsnI	GGCC	2 cut(s)	159, 288
Bsp119I	TTCGAA	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	343, 581
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	6 cut(s)	130, 192, 204, 211, 331, 430
BspANI	GGCC	2 cut(s)	159, 288
BspLI	GGNNCC	3 cut(s)	186, 289, 583
BspPI	GGATC	3 cut(s)	338, 576, 589
BspT104I	TTCGAA	1 cut(s)	436
BsrI	ACTGG	2 cut(s)	408, 533
BssECI	CCNNGG	2 cut(s)	180, 446
BssMI	GATC	2 cut(s)	343, 581
BssT1I	CCWWGG	2 cut(s)	180, 446
Bst2UI	CCWGG	1 cut(s)	285
Bst6I	CTCTTC	2 cut(s)	59, 332
BstBI	TTCGAA	1 cut(s)	436
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	3 cut(s)	126, 207, 456
BstH2I	RGCGCY	1 cut(s)	304
BstHHI	GCGC	2 cut(s)	249, 303
BstKTI	GATC	2 cut(s)	346, 584
BstMAI	GTCTC	1 cut(s)	416
BstMBI	GATC	2 cut(s)	343, 581
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	256, 442
BstX2I	RGATCY	1 cut(s)	581
BstYI	RGATCY	1 cut(s)	581
BsuRI	GGCC	2 cut(s)	159, 288
BtgI	CCRYGG	1 cut(s)	180
BtgZI	GCGATG	2 cut(s)	181, 520
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	126, 207, 456
BtsIMutI	CAGTG	1 cut(s)	550
CfoI	GCGC	2 cut(s)	249, 303
Cfr13I	GGNCC	2 cut(s)	184, 287
CseI	GACGC	1 cut(s)	359
Csp6I	GTAC	1 cut(s)	532
CviAII	CATG	2 cut(s)	181, 241
CviJI	RGCY	8 cut(s)	159, 218, 288, 319, 395, 433, 455, 513
CviKI_1	RGCY	8 cut(s)	159, 218, 288, 319, 395, 433, 455, 513
CviQI	GTAC	1 cut(s)	532
DpnI	GATC	2 cut(s)	345, 583
DpnII	GATC	2 cut(s)	343, 581
EaeI	YGGCCR	1 cut(s)	157
Eam1104I	CTCTTC	2 cut(s)	59, 332
EarI	CTCTTC	2 cut(s)	59, 332
EciI	GGCGGA	4 cut(s)	119, 181, 193, 320
Eco130I	CCWWGG	2 cut(s)	180, 446
Eco47I	GGWCC	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	473
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	2 cut(s)	180, 446
ErhI	CCWWGG	2 cut(s)	180, 446
FaeI	CATG	2 cut(s)	184, 244
FaiI	YATR	4 cut(s)	182, 242, 404, 556
FaqI	GGGAC	1 cut(s)	170
FatI	CATG	2 cut(s)	180, 240
Fnu4HI	GCNGC	3 cut(s)	245, 431, 456
FokI	GGATG	3 cut(s)	113, 194, 463
Fsp4HI	GCNGC	3 cut(s)	245, 431, 456
GlaI	GCGC	2 cut(s)	248, 302
GluI	GCNGC	3 cut(s)	245, 431, 456
GsaI	CCCAGC	1 cut(s)	513
HaeII	RGCGCY	1 cut(s)	304
HaeIII	GGCC	2 cut(s)	159, 288
HgaI	GACGC	1 cut(s)	359
HhaI	GCGC	2 cut(s)	249, 303
Hin1II	CATG	2 cut(s)	184, 244
Hin6I	GCGC	2 cut(s)	247, 301
HinP1I	GCGC	2 cut(s)	247, 301
HinfI	GANTC	4 cut(s)	167, 442, 479, 548
HphI	GGTGA	3 cut(s)	60, 130, 305
Hpy166II	GTNNAC	1 cut(s)	6
Hpy188I	TCNGA	3 cut(s)	154, 472, 496
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	6
Hpy99I	CGWCG	2 cut(s)	344, 353
HpyAV	CCTTC	2 cut(s)	114, 425
HpyCH4IV	ACGT	1 cut(s)	135
HpyCH4V	TGCA	2 cut(s)	244, 309
HpySE526I	ACGT	1 cut(s)	135
Hsp92II	CATG	2 cut(s)	184, 244
HspAI	GCGC	2 cut(s)	247, 301
Kzo9I	GATC	2 cut(s)	343, 581
LpnPI	CCDG	8 cut(s)	270, 275, 297, 311, 329, 421, 514, 523
Lsp1109I	GCAGC	2 cut(s)	256, 442
LweI	GCATC	2 cut(s)	258, 282
MaeII	ACGT	1 cut(s)	135
MaeIII	GTNAC	3 cut(s)	136, 368, 545
MalI	GATC	2 cut(s)	345, 583
MboI	GATC	2 cut(s)	343, 581
MboII	GAAGA	4 cut(s)	46, 49, 319, 457
MflI	RGATCY	1 cut(s)	581
MlsI	TGGCCA	1 cut(s)	159
MluCI	AATT	4 cut(s)	83, 388, 398, 473
MluNI	TGGCCA	1 cut(s)	159
MlyI	GAGTC	3 cut(s)	161, 451, 542
MmeI	TCCRAC	2 cut(s)	56, 195
Mox20I	TGGCCA	1 cut(s)	159
MscI	TGGCCA	1 cut(s)	159
MseI	TTAA	1 cut(s)	595
Msp20I	TGGCCA	1 cut(s)	159
MspR9I	CCNGG	1 cut(s)	285
Mva1269I	GAATGC	2 cut(s)	309, 432
MvaI	CCWGG	1 cut(s)	285
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	343, 581
NlaIII	CATG	2 cut(s)	184, 244
NlaIV	GGNNCC	3 cut(s)	186, 289, 583
NmuCI	GTSAC	3 cut(s)	136, 368, 545
NspV	TTCGAA	1 cut(s)	436
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PctI	GAATGC	2 cut(s)	309, 432
PfeI	GAWTC	1 cut(s)	479
PkrI	GCNGC	3 cut(s)	246, 432, 457
PleI	GAGTC	3 cut(s)	161, 450, 542
PpsI	GAGTC	3 cut(s)	161, 450, 542
PsiI	TTATAA	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	509
PspGI	CCWGG	1 cut(s)	283
PspN4I	GGNNCC	3 cut(s)	186, 289, 583
PspPI	GGNCC	2 cut(s)	184, 287
PsuI	RGATCY	1 cut(s)	581
RsaI	GTAC	1 cut(s)	533
RsaNI	GTAC	1 cut(s)	532
SaqAI	TTAA	1 cut(s)	595
SatI	GCNGC	3 cut(s)	245, 431, 456
Sau3AI	GATC	2 cut(s)	343, 581
Sau96I	GGNCC	2 cut(s)	184, 287
SchI	GAGTC	3 cut(s)	161, 451, 542
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	8 cut(s)	25, 138, 227, 321, 327, 397, 515, 576
SfaNI	GCATC	2 cut(s)	258, 282
SfuI	TTCGAA	1 cut(s)	436
SinI	GGWCC	1 cut(s)	184
Sse9I	AATT	4 cut(s)	83, 388, 398, 473
SsiI	CCGC	6 cut(s)	130, 192, 204, 211, 331, 430
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	2 cut(s)	180, 446
TaiI	ACGT	1 cut(s)	138
TaqI	TCGA	6 cut(s)	252, 321, 342, 424, 436, 477
TasI	AATT	4 cut(s)	83, 388, 398, 473
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	1 cut(s)	479
Tru1I	TTAA	1 cut(s)	595
Tru9I	TTAA	1 cut(s)	595
TscAI	CASTG	1 cut(s)	550
TseFI	GTSAC	3 cut(s)	136, 368, 545
TseI	GCWGC	2 cut(s)	244, 455
Tsp45I	GTSAC	3 cut(s)	136, 368, 545
TspDTI	ATGAA	3 cut(s)	229, 364, 450
TspGWI	ACGGA	1 cut(s)	352
TspRI	CASTG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	2 cut(s)	83, 473
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.