Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005687

Physical Location & Seq

Genomic Coordinates Forward (+)

43866811 .. 43867383

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0266400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAATTCTGATGTACCTATATGCGTTGGGAAGGTCATGGCAGGGTTGACTGAGGTTAATTGTTTTAGGAATTGGGCATCAATGATACCATCCACTCTACCTAAGATGATATCAGTGCAGCAAGTGTCGGTTCCTAAGAAGACTGAGAAGAAAATGGAGATGAAGATGGGGTGGCCGGATTCGAGTTTGGTCTCTGTGGGCTCGAAACGAAAGGCCATCTTCGAACTCCCTAAGGTTGGGAAAAGGTATCTGGCTCTTCCCTCCACTGAGTTGCAGGTGGATGAGAATACTACTTTGATGCTGCAGCACAAAAATGGCAAAATTATTGTTTCTCCTAAGAAAAAGAAACTGGGGCGTCCCTGCGGAAGCAAGAATAAACCCAAATCTGCTCGAGCTATTGGGATGGAGGAGCTTGTGAAGAAGCCTTGTAAATGGAAGAGTCAAAGGGATAAAGCTGGCGAGTTTGATACTGCAGAGAAAGCCATTGGCATGGTGATCCCTGAATTGGATGGGGTGGAACAGGAAGGTATTATGGAAGGGGAGTCTCCCCTTCTAACTCCAAATGTTATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0009987 GO:0010109 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048037 GO:0048038 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0060255 GO:0065007 GO:0071704 GO:0080005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

20.97

Weight (kDa)

9.53

Isoelectric Point (pI)

37.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67840 AT1G67840
fragaria_vesca	FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g35670
malus_domestica	MD13G1099700.v1.1
prunus_persica	Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1
pyrus_communis	pycom12g22130 pycom13g08710
rosa_chinensis	RchiOBHm_Chr4g0433151
rosa_laevigata	RLG00000006779
rosa_multiflora	Rmu_sc0020880.1_g000001 Rmu_ssc0000295.1_g000015
rosa_roxburghii	Rroxscaffold_5G00374630
rosa_rugosa	Rorug04G0266300 Rorug04G0266400
rosa_samantha	Rh4AG320100 Rh4BG328300 Rh4CG343700 Rh4DG323700
rosa_wichuraiana	Rw4G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	265
Acc36I	ACCTGC	1 cut(s)	265
AciI	CCGC	1 cut(s)	363
AclWI	GGATC	1 cut(s)	490
AcoI	YGGCCR	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	355
AfaI	GTAC	1 cut(s)	15
AfiI	CCNNNNNNNGG	2 cut(s)	236, 505
AluBI	AGCT	3 cut(s)	395, 412, 455
AluI	AGCT	3 cut(s)	395, 412, 455
Alw26I	GTCTC	2 cut(s)	196, 549
AlwI	GGATC	1 cut(s)	490
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	2 cut(s)	173, 213
ApeKI	GCWGC	3 cut(s)	118, 301, 304
ApoI	RAATTY	1 cut(s)	4
AsuHPI	GGTGA	1 cut(s)	505
AsuII	TTCGAA	1 cut(s)	222
AvaI	CYCGRG	1 cut(s)	390
AxyI	CCTNAGG	1 cut(s)	231
BanII	GRGCYC	1 cut(s)	203
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	130, 288, 316
BccI	CCATC	5 cut(s)	97, 160, 224, 397, 503
BcoDI	GTCTC	2 cut(s)	196, 549
BfmI	CTRYAG	2 cut(s)	302, 471
BfuAI	ACCTGC	1 cut(s)	265
BisI	GCNGC	3 cut(s)	119, 302, 305
BlsI	GCNGC	3 cut(s)	120, 303, 306
BmeT110I	CYCGRG	1 cut(s)	390
BmiI	GGNNCC	1 cut(s)	132
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	2 cut(s)	86, 288
BmuI	ACTGGG	1 cut(s)	359
BpiI	GAAGAC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	222
BsaHI	GRCGYC	1 cut(s)	355
BsaI	GGTCTC	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	236, 505
Bse1I	ACTGG	1 cut(s)	354
Bse21I	CCTNAGG	1 cut(s)	231
BseGI	GGATG	4 cut(s)	89, 286, 408, 514
BseLI	CCNNNNNNNGG	2 cut(s)	236, 505
BseMII	CTCAG	3 cut(s)	42, 135, 258
BseNI	ACTGG	1 cut(s)	354
BseRI	GAGGAG	1 cut(s)	422
BseXI	GCAGC	3 cut(s)	130, 288, 316
BsgI	GTGCAG	1 cut(s)	137
BshFI	GGCC	2 cut(s)	175, 215
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	342
BslI	CCNNNNNNNGG	2 cut(s)	236, 505
BsmAI	GTCTC	2 cut(s)	196, 549
BsmFI	GGGAC	1 cut(s)	342
BsnI	GGCC	2 cut(s)	175, 215
Bso31I	GGTCTC	1 cut(s)	196
BsoBI	CYCGRG	1 cut(s)	390
Bsp119I	TTCGAA	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	495
BspACI	CCGC	1 cut(s)	363
BspANI	GGCC	2 cut(s)	175, 215
BspCNI	CTCAG	3 cut(s)	43, 136, 259
BspLI	GGNNCC	1 cut(s)	132
BspMAI	CTGCAG	2 cut(s)	306, 475
BspMI	ACCTGC	1 cut(s)	265
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	1 cut(s)	261
BspT104I	TTCGAA	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	354
BssMI	GATC	1 cut(s)	495
BssNI	GRCGYC	1 cut(s)	355
Bst6I	CTCTTC	2 cut(s)	261, 431
BstACI	GRCGYC	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	222
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	7 cut(s)	51, 102, 135, 144, 231, 267, 336
BstF5I	GGATG	4 cut(s)	89, 286, 408, 514
BstKTI	GATC	1 cut(s)	498
BstMAI	GTCTC	2 cut(s)	196, 549
BstMBI	GATC	1 cut(s)	495
BstMWI	GCNNNNNNNGC	1 cut(s)	479
BstSFI	CTRYAG	2 cut(s)	302, 471
BstV1I	GCAGC	3 cut(s)	130, 288, 316
BstV2I	GAAGAC	1 cut(s)	146
BstXI	CCANNNNNNTGG	1 cut(s)	490
Bsu36I	CCTNAGG	1 cut(s)	231
BsuRI	GGCC	2 cut(s)	175, 215
BtsCI	GGATG	4 cut(s)	89, 286, 408, 514
BtsIMutI	CAGTG	2 cut(s)	120, 264
BveI	ACCTGC	1 cut(s)	265
Cac8I	GCNNGC	1 cut(s)	457
CseI	GACGC	1 cut(s)	344
Csp6I	GTAC	1 cut(s)	14
CviAII	CATG	2 cut(s)	37, 490
CviJI	RGCY	9 cut(s)	175, 201, 215, 254, 395, 412, 424, 455, 482
CviKI_1	RGCY	9 cut(s)	175, 201, 215, 254, 395, 412, 424, 455, 482
CviQI	GTAC	1 cut(s)	14
DdeI	CTNAG	7 cut(s)	51, 102, 135, 144, 231, 267, 336
DpnI	GATC	1 cut(s)	497
DpnII	GATC	1 cut(s)	495
EaeI	YGGCCR	1 cut(s)	173
Eam1104I	CTCTTC	2 cut(s)	261, 431
EarI	CTCTTC	2 cut(s)	261, 431
Eco24I	GRGCYC	1 cut(s)	203
Eco31I	GGTCTC	1 cut(s)	196
Eco32I	GATATC	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	231
Eco88I	CYCGRG	1 cut(s)	390
EcoRI	GAATTC	1 cut(s)	4
EcoRV	GATATC	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	203
FaeI	CATG	2 cut(s)	40, 493
FaiI	YATR	5 cut(s)	20, 22, 38, 491, 533
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	1 cut(s)	342
FatI	CATG	2 cut(s)	36, 489
Fnu4HI	GCNGC	3 cut(s)	119, 302, 305
FokI	GGATG	4 cut(s)	76, 293, 415, 521
FriOI	GRGCYC	1 cut(s)	203
Fsp4HI	GCNGC	3 cut(s)	119, 302, 305
GluI	GCNGC	3 cut(s)	119, 302, 305
HaeIII	GGCC	2 cut(s)	175, 215
HapII	CCGG	1 cut(s)	176
HgaI	GACGC	1 cut(s)	344
Hin1I	GRCGYC	1 cut(s)	355
Hin1II	CATG	2 cut(s)	40, 493
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	179, 439, 542
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	505
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	1 cut(s)	10
Hpy8I	GTNNAC	1 cut(s)	48
HpyAV	CCTTC	4 cut(s)	25, 518, 530, 560
HpyCH4V	TGCA	4 cut(s)	118, 274, 304, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	479
HpyF3I	CTNAG	7 cut(s)	51, 102, 135, 144, 231, 267, 336
Hsp92I	GRCGYC	1 cut(s)	355
Hsp92II	CATG	2 cut(s)	40, 493
Kzo9I	GATC	1 cut(s)	495
LguI	GCTCTTC	1 cut(s)	261
LmnI	GCTCC	1 cut(s)	409
LpnPI	CCDG	9 cut(s)	27, 189, 236, 260, 335, 373, 441, 506, 513
Lsp1109I	GCAGC	3 cut(s)	130, 288, 316
LweI	GCATC	2 cut(s)	86, 288
MalI	GATC	1 cut(s)	497
MboI	GATC	1 cut(s)	495
MboII	GAAGA	7 cut(s)	151, 160, 175, 211, 248, 430, 448
MhlI	GDGCHC	1 cut(s)	203
MluCI	AATT	5 cut(s)	4, 58, 70, 321, 503
MlyI	GAGTC	2 cut(s)	448, 551
MnlI	CCTC	3 cut(s)	46, 271, 400
MseI	TTAA	2 cut(s)	57, 571
MslI	CAYNNNNRTG	2 cut(s)	312, 488
MspI	CCGG	1 cut(s)	176
MwoI	GCNNNNNNNGC	1 cut(s)	479
NdeII	GATC	1 cut(s)	495
NlaIII	CATG	2 cut(s)	40, 493
NlaIV	GGNNCC	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	222
PaeR7I	CTCGAG	1 cut(s)	390
PaqCI	CACCTGC	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	261
PfeI	GAWTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	120, 303, 306
PleI	GAGTC	2 cut(s)	447, 550
PpsI	GAGTC	2 cut(s)	447, 550
PspN4I	GGNNCC	1 cut(s)	132
PspXI	VCTCGAGB	1 cut(s)	390
PstI	CTGCAG	2 cut(s)	306, 475
RsaI	GTAC	1 cut(s)	15
RsaNI	GTAC	1 cut(s)	14
RseI	CAYNNNNRTG	2 cut(s)	312, 488
SapI	GCTCTTC	1 cut(s)	261
SaqAI	TTAA	2 cut(s)	57, 571
SatI	GCNGC	3 cut(s)	119, 302, 305
Sau3AI	GATC	1 cut(s)	495
SchI	GAGTC	2 cut(s)	448, 551
SduI	GDGCHC	1 cut(s)	203
SfaNI	GCATC	2 cut(s)	86, 288
SfcI	CTRYAG	2 cut(s)	302, 471
Sfr274I	CTCGAG	1 cut(s)	390
SfuI	TTCGAA	1 cut(s)	222
SlaI	CTCGAG	1 cut(s)	390
SmiMI	CAYNNNNRTG	2 cut(s)	312, 488
SmlI	CTYRAG	1 cut(s)	390
SmoI	CTYRAG	1 cut(s)	390
Sse9I	AATT	5 cut(s)	4, 58, 70, 321, 503
SsiI	CCGC	1 cut(s)	363
TaqI	TCGA	4 cut(s)	182, 203, 222, 391
TasI	AATT	5 cut(s)	4, 58, 70, 321, 503
TfiI	GAWTC	1 cut(s)	179
Tru1I	TTAA	2 cut(s)	57, 571
Tru9I	TTAA	2 cut(s)	57, 571
TscAI	CASTG	2 cut(s)	120, 271
TseI	GCWGC	3 cut(s)	118, 301, 304
TspDTI	ATGAA	2 cut(s)	17, 176
TspRI	CASTG	2 cut(s)	120, 271
XapI	RAATTY	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.