Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005687

Physical Location & Seq

Genomic Coordinates Reverse (-)

55660767 .. 55667356

Gene Structure 6590 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2856 bp

ATGGGATCGACCGGATCGTGGTGGAGGGGTGGCGGCTTGACTGCGGGGTTGAATGTGGGGTTGGATTCCGGTGGCCTTGGGGCACGGGTTTCGACCAATGGAATGTATACATATGGTTTTGGTGTGGGTGGTGCCTCGACGGCGGTGGTGACATGGCCTCATGGTGGTAGGGTTGGTGGTGAGGTCCTCATGGGTTGGGCGGGATGCATTGGTACTCAACAATCTGTCAATGACATCTTTCTCGGTGCAACTGCATGGCTTAAGGAGTTTCAACATGCTAGACAAGTGCCTAAACCTACTCATGCACGAACTACACAAACCGGAAACCGAGTCTCGAGGGTAGATGGAACACACCGAGTTTTTGGCTATCAAGGAAGGCCTCAAACCGCTGCAGATAATGTAGACCGAGAATGTGGCGGCCTGGTGAATAATATCAAGACTGACTTAAGGTTAATTCAGTATGCCATGCTCCAAGGACTTATAATGGAGTGGCGAGATAGACTAGCAAGGATTCTTATCAGAAGATGGGGATGTAGCTCAAATGGTAGAGCGCCCGCTTTGCATGCGGGAGCCGTCTTAGCTCAGCTGGTAGAGCGCGTGGCTTTTAACCACGTGGTCGTGGGTTCGATTCCCACAGACGGCGTCTTTTGCTTTATTTTTTTTTTCTTTTACCGCCAAGTTGGTGCACCCATCCGACGTCGTTTTGGCTTTCGGTTGGGCACACTGAACTGTCTGCCTGAAAACTTCCTCCCTCCTCATCCTCCAACGTCCCCCAATGCTTCTCTCTGCTGCAATCGCTCACCAACACCCCTCAAATTCCACTTCTACCCTCCTCATTTCCCCTATTGCCCCCAAACTCCCCTCCACCTCCCTCAAACCCCCTCACCGACCTCACCTCCTCCCCATCGCCTCCCTCCAGAACCCTACCCCCCAAACCATCCGCCACGTCACCCACACCCCTCCGATGCCGACCCCGGAGCCAATAACTCCATGGTCCCCTCCGCCTCGGCCGTCGCCTCCGCCATCCGCCGAGCCTCCTCCTCCCCCGTCGACTTCATGCAGAGGATCGACAAGGACCAGAAAAACGGCATCGTTTTGCCTAGCCCCGACTTCCAGCGGCTCTGCATTCAGCAGCTCGACCTCTTCCGCCGTATCGTCCATCCCGACGCTCTCCTCTCGGTATATGTAAGACCAGCCGGTAGCTATGTGATGGACCGATTAGAGCTGCGTAGAGTGACTTGCTATCCCGGCGTGAATGCATCAGATGTTGTGATTTTAGTGGGAAGTTTTAGTGTTGCCACCGGTTTTCGCGCCGCAGAGGCAGTTCTTTCCAATCACAAAGTGGAAGTTATAGCGGAGTGTAAAGCTATGGTTTTTCCTATGGTGAAGCACCCTTTTGTGGTGGGGTTCTTGGTTGCTGAGTTACCCAGGATGGAAATGCCATCACCGGGAAGTGTCCGGGGTGAAGGCTGTGATTTGGTTCACTGCCCCACTCCTGAGGAAGCCTATGCTTCGCCTCAGGGATCCGATGCCATATCTTGGGATGAGTACTCTTTGGAGAATGAACCGGAACCAGTAGTGACAATGTACAAGTTTAGTGCGGAGCAGAGATCAATTGCTATCAACATATCTCTGTCTTTAGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTCCAGCAATCATCGTGGCAGAATAACGTAAGGATGAGCAGTCTAGTTGAGCAGATTCGTGGTCCTCTTTCTAGCATTCGAACTTTGAGTAAAATGTTGTCCGTGCATACAAAGAGAAGTGAGATTTCTTATGACATTGTTGAAGATATACTGGTACAAGGCGATCAAGTGAAAGATACCCTTCAGCAACTCCAAGATGCTGCTAATATTATGCGCTATAGCGAACAGGACTCTACATACGTATATCCTGACACACGGAGGTCTCAATTATTGAATAACTTGCCAAGTGATAGTTCCAGCGTTAAGATGCAACTTTCTGGTGAACAACTTTCTCTAAAAGCTCCAACCAAAGATATAGAGATGCCGATGCCACCTCTAGCCCTTGCTCCTTTACAGCAAGATGGGATTAGACCATGCAATGTTTCTGATATACTGGTAGATTTGGTAGAAGCTGTAAGACCTCTTGCCCATAACCAGCAGCGTAGGGTACAACTGAGTGAACTTGAAAAATCTTTGCAAGTAGCTGTAGAAGAACCTGCTTTACGACAGGCTCTGAGCAATTTAATCGAAAGTGCATTATTGCGTACGCATGCTGGGGGAAAGGTAGAAATTGTGTCTACTGGAGCTCCAGCAGGTGGTGCTCTTGTAGTAATTGATGACGATGGGCCTGACATGCATTATATGACACAGATGCATTCCCTCGCACCCTTTGGAACTGATCTCCTCTCAGAAAATATGGTTGAAGACAACATGACGTGGAACTTTGTTGCTGGGCTGACTGTTGCCCGCGAGATACTCGAAAGTTATGGTTGTGTAATCCGTGTCATATCACCCCGGAATAAAGATGCTGCCCTTGGAGCAGGTGGAACTCGAGTCGAAGTCTGGCTTCCTTCTCTCATGGAATTCTCTGTTCAGAACACCACATCAGTGAAATCTTGGACTGCTTCTTCGAAGCTCAGATCTCTTCAGTTGTCAACAAAGGTTGCTCGCCTTGTTCGACAATATCCTCGGCCATGGGCAAGGGACTCGCTAGACATGGATGGAGACCCGCCTCCTGATCTAGACTCTAGAGCATCCTCGACTCCTATATTGCGGCCATTGATTGTGGAAGCTGAGGTGCTCCTCTACCCGGAGAGGACTGGACGCCATCTCCGGCACAAACTGTTGGAAATGTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0009987 GO:0010109 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048037 GO:0048038 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0060255 GO:0065007 GO:0071704 GO:0080005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

951

Amino Acids

104.63

Weight (kDa)

7.34

Isoelectric Point (pI)

53.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	737 - 856	2.9e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67840 AT1G67840
fragaria_vesca	FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g35670
malus_domestica	MD13G1099700.v1.1
prunus_persica	Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1
pyrus_communis	pycom12g22130 pycom13g08710
rosa_chinensis	RchiOBHm_Chr4g0433151
rosa_laevigata	RLG00000006779
rosa_multiflora	Rmu_sc0020880.1_g000001 Rmu_ssc0000295.1_g000015
rosa_roxburghii	Rroxscaffold_5G00374630
rosa_rugosa	Rorug04G0266300 Rorug04G0266400
rosa_samantha	Rh4AG320100 Rh4BG328300 Rh4CG343700 Rh4DG323700
rosa_wichuraiana	Rw4G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	482
AarI	CACCTGC	2 cut(s)	2300, 2528
AatII	GACGTC	1 cut(s)	700
Acc36I	ACCTGC	3 cut(s)	2221, 2300, 2528
AccB1I	GGYRCC	1 cut(s)	131
AccB7I	CCANNNNNTGG	2 cut(s)	1539, 2312
AccI	GTMKAC	4 cut(s)	107, 402, 1050, 2294
AccII	CGCG	3 cut(s)	597, 1311, 2466
AclWI	GGATC	6 cut(s)	13, 22, 1073, 1518, 1531, 1668
AcoI	YGGCCR	3 cut(s)	1008, 2687, 2771
AcsI	RAATTY	2 cut(s)	815, 2579
AcuI	CTGAAG	2 cut(s)	1844, 2627
AcvI	CACGTG	1 cut(s)	613
AcyI	GRCGYC	3 cut(s)	642, 697, 2821
AdeI	CACNNNGTG	1 cut(s)	1342
AfaI	GTAC	6 cut(s)	214, 1550, 1589, 1833, 2166, 2263
AfiI	CCNNNNNNNGG	8 cut(s)	18, 164, 638, 1399, 1448, 1539, 2312, 2806
AflII	CTTAAG	2 cut(s)	260, 445
AgeI	ACCGGT	1 cut(s)	1301
AgsI	TTSAA	6 cut(s)	52, 272, 1820, 1951, 2183, 2420
AjiI	CACGTC	2 cut(s)	947, 2433
AjnI	CCWGG	2 cut(s)	420, 1427
AjuI	GAANNNNNNNTTGG	4 cut(s)	44, 76, 1954, 1986
AleI	CACNNNNGTG	1 cut(s)	2603
Alw21I	GWGCWC	4 cut(s)	688, 2305, 2320, 2799
Alw26I	GTCTC	3 cut(s)	337, 1944, 2715
Alw44I	GTGCAC	1 cut(s)	684
AlwI	GGATC	6 cut(s)	13, 22, 1073, 1518, 1531, 1668
AlwNI	CAGNNNCTG	1 cut(s)	2230
Ama87I	CYCGRG	2 cut(s)	334, 2547
AoxI	GGCC	8 cut(s)	73, 155, 377, 418, 1008, 2342, 2687, 2771
ApaLI	GTGCAC	1 cut(s)	684
ApeKI	GCWGC	7 cut(s)	389, 789, 1132, 1225, 1877, 2155, 2525
ApoI	RAATTY	2 cut(s)	815, 2579
ArsI	GACNNNNNNTTYG	2 cut(s)	2608, 2640
AsiGI	ACCGGT	1 cut(s)	1301
AspLEI	GCGC	4 cut(s)	553, 597, 1313, 1893
AspS9I	GGNCC	6 cut(s)	184, 994, 1075, 1213, 1739, 2342
AsuC2I	CCSGG	6 cut(s)	975, 1248, 1449, 1460, 2512, 2807
AsuII	TTCGAA	2 cut(s)	1756, 2627
AvaI	CYCGRG	2 cut(s)	334, 2547
AvaII	GGWCC	5 cut(s)	184, 994, 1075, 1213, 1739
AxyI	CCTNAGG	2 cut(s)	1497, 1518
BaeGI	GKGCMC	3 cut(s)	85, 688, 722
BamHI	GGATCC	1 cut(s)	1523
BanI	GGYRCC	1 cut(s)	131
BanII	GRGCYC	1 cut(s)	2305
BbrPI	CACGTG	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	2427
Bbv12I	GWGCWC	4 cut(s)	688, 2305, 2320, 2799
BbvCI	CCTCAGC	1 cut(s)	2790
BbvI	GCAGC	7 cut(s)	376, 776, 1144, 1212, 1864, 2167, 2512
BceAI	ACGGC	6 cut(s)	156, 557, 655, 995, 1102, 1134
BcgI	CGANNNNNNTGC	6 cut(s)	72, 106, 2224, 2258, 2685, 2719
BciT130I	CCWGG	2 cut(s)	422, 1429
BcnI	CCSGG	6 cut(s)	975, 1248, 1449, 1460, 2512, 2807
BcoDI	GTCTC	3 cut(s)	337, 1944, 2715
BfaI	CTAG	9 cut(s)	279, 503, 1101, 1721, 1749, 2054, 2708, 2738, 2745
BfmI	CTRYAG	3 cut(s)	390, 1894, 2202
BfoI	RGCGCY	1 cut(s)	554
BfrI	CTTAAG	2 cut(s)	260, 445
BfuAI	ACCTGC	3 cut(s)	2221, 2300, 2528
BglI	GCCNNNNNGGC	2 cut(s)	140, 1319
BglII	AGATCT	1 cut(s)	2636
BlpI	GCTNAGC	1 cut(s)	582
BmcAI	AGTACT	1 cut(s)	1550
Bme1390I	CCNGG	8 cut(s)	422, 975, 1248, 1429, 1449, 1460, 2512, 2807
Bme18I	GGWCC	5 cut(s)	184, 994, 1075, 1213, 1739
BmeT110I	CYCGRG	2 cut(s)	334, 2547
BmgBI	CACGTC	2 cut(s)	947, 2433
BmgT120I	GGNCC	6 cut(s)	184, 994, 1075, 1213, 1739, 2342
BmiI	GGNNCC	6 cut(s)	133, 571, 979, 996, 1525, 1572
BmrFI	CCNGG	8 cut(s)	422, 975, 1248, 1429, 1449, 1460, 2512, 2807
BpiI	GAAGAC	1 cut(s)	2427
BpmI	CTGGAG	4 cut(s)	900, 1664, 2289, 2319
Bpu10I	CCTNAGC	1 cut(s)	2790
Bpu1102I	GCTNAGC	1 cut(s)	582
Bpu14I	TTCGAA	2 cut(s)	1756, 2627
BpuMI	CCSGG	6 cut(s)	975, 1248, 1449, 1460, 2512, 2807
BsaAI	YACGTR	2 cut(s)	613, 1918
BsaBI	GATNNNNATC	1 cut(s)	515
BsaHI	GRCGYC	3 cut(s)	642, 697, 2821
BsaI	GGTCTC	2 cut(s)	1944, 2715
BsaWI	WCCGGW	5 cut(s)	11, 68, 320, 1301, 1567
BsaXI	ACNNNNNCTCC	6 cut(s)	880, 910, 2287, 2317, 2811, 2841
Bsc4I	CCNNNNNNNGG	8 cut(s)	18, 164, 638, 1399, 1448, 1539, 2312, 2806
Bse118I	RCCGGY	2 cut(s)	1196, 1301
Bse1I	ACTGG	5 cut(s)	1574, 1833, 2115, 2302, 2821
Bse21I	CCTNAGG	2 cut(s)	1497, 1518
Bse3DI	GCAATG	2 cut(s)	1677, 2101
Bse8I	GATNNNNATC	1 cut(s)	515
BseBI	CCWGG	2 cut(s)	422, 1429
BseJI	GATNNNNATC	1 cut(s)	515
BseLI	CCNNNNNNNGG	8 cut(s)	18, 164, 638, 1399, 1448, 1539, 2312, 2806
BseMI	GCAATG	2 cut(s)	1677, 2101
BseMII	CTCAG	9 cut(s)	596, 1410, 1488, 1532, 2162, 2222, 2418, 2647, 2781
BseNI	ACTGG	5 cut(s)	1574, 1833, 2115, 2302, 2821
BseRI	GAGGAG	8 cut(s)	744, 822, 888, 1027, 1030, 1163, 2390, 2789
BseSI	GKGCMC	3 cut(s)	85, 688, 722
BseX3I	CGGCCG	1 cut(s)	1008
BseXI	GCAGC	7 cut(s)	376, 776, 1144, 1212, 1864, 2167, 2512
BseYI	CCCAGC	2 cut(s)	2270, 2447
Bsh1236I	CGCG	3 cut(s)	597, 1311, 2466
Bsh1285I	CGRYCG	2 cut(s)	12, 1011
BshFI	GGCC	8 cut(s)	75, 157, 379, 420, 1010, 2344, 2689, 2773
BshNI	GGYRCC	1 cut(s)	131
BshTI	ACCGGT	1 cut(s)	1301
BsiEI	CGRYCG	2 cut(s)	12, 1011
BsiHKAI	GWGCWC	4 cut(s)	688, 2305, 2320, 2799
BsiHKCI	CYCGRG	2 cut(s)	334, 2547
BsiWI	CGTACG	1 cut(s)	2261
BslFI	GGGAC	3 cut(s)	754, 980, 2714
BslI	CCNNNNNNNGG	8 cut(s)	18, 164, 638, 1399, 1448, 1539, 2312, 2806
BsmAI	GTCTC	3 cut(s)	337, 1944, 2715
BsmFI	GGGAC	3 cut(s)	754, 980, 2714
BsmI	GAATGC	4 cut(s)	1125, 1261, 1752, 2371
BsnI	GGCC	8 cut(s)	75, 157, 379, 420, 1010, 2344, 2689, 2773
Bso31I	GGTCTC	2 cut(s)	1944, 2715
BsoBI	CYCGRG	2 cut(s)	334, 2547
Bsp119I	TTCGAA	2 cut(s)	1756, 2627
Bsp1286I	GDGCHC	6 cut(s)	85, 688, 722, 2305, 2320, 2799
Bsp1407I	TGTACA	1 cut(s)	1587
Bsp1720I	GCTNAGC	1 cut(s)	582
Bsp19I	CCATGG	2 cut(s)	990, 2690
BspANI	GGCC	8 cut(s)	75, 157, 379, 420, 1010, 2344, 2689, 2773
BspCNI	CTCAG	9 cut(s)	595, 1411, 1489, 1531, 2163, 2223, 2417, 2646, 2782
BspFNI	CGCG	3 cut(s)	597, 1311, 2466
BspLI	GGNNCC	6 cut(s)	133, 571, 979, 996, 1525, 1572
BspMAI	CTGCAG	1 cut(s)	394
BspMI	ACCTGC	3 cut(s)	2221, 2300, 2528
BspPI	GGATC	6 cut(s)	13, 22, 1073, 1518, 1531, 1668
BspT104I	TTCGAA	2 cut(s)	1756, 2627
BspT107I	GGYRCC	1 cut(s)	131
BspTI	CTTAAG	2 cut(s)	260, 445
BspTNI	GGTCTC	2 cut(s)	1944, 2715
BsrDI	GCAATG	2 cut(s)	1677, 2101
BsrFI	RCCGGY	2 cut(s)	1196, 1301
BsrGI	TGTACA	1 cut(s)	1587
BsrI	ACTGG	5 cut(s)	1574, 1833, 2115, 2302, 2821
BssAI	RCCGGY	2 cut(s)	1196, 1301
BssNAI	GTATAC	1 cut(s)	108
BssNI	GRCGYC	3 cut(s)	642, 697, 2821
BssT1I	CCWWGG	5 cut(s)	76, 472, 990, 2530, 2690
Bst1107I	GTATAC	1 cut(s)	108
Bst2UI	CCWGG	2 cut(s)	422, 1429
Bst4CI	ACNGT	3 cut(s)	731, 2458, 2841
Bst6I	CTCTTC	2 cut(s)	1148, 2646
BstACI	GRCGYC	3 cut(s)	642, 697, 2821
BstAFI	CTTAAG	2 cut(s)	260, 445
BstAPI	GCANNNNNTGC	1 cut(s)	2315
BstAUI	TGTACA	1 cut(s)	1587
BstBAI	YACGTR	2 cut(s)	613, 1918
BstBI	TTCGAA	2 cut(s)	1756, 2627
BstC8I	GCNNGC	5 cut(s)	555, 564, 2268, 2464, 2665
BstDSI	CCRYGG	2 cut(s)	990, 2690
BstFNI	CGCG	3 cut(s)	597, 1311, 2466
BstH2I	RGCGCY	1 cut(s)	554
BstHHI	GCGC	4 cut(s)	553, 597, 1313, 1893
BstMAI	GTCTC	3 cut(s)	337, 1944, 2715
BstMCI	CGRYCG	2 cut(s)	12, 1011
BstNI	CCWGG	2 cut(s)	422, 1429
BstNSI	RCATGY	4 cut(s)	278, 566, 2270, 2353
BstSCI	CCNGG	8 cut(s)	420, 973, 1246, 1427, 1447, 1458, 2510, 2805
BstSFI	CTRYAG	3 cut(s)	390, 1894, 2202
BstSLI	GKGCMC	3 cut(s)	85, 688, 722
BstSNI	TACGTA	1 cut(s)	1918
BstUI	CGCG	3 cut(s)	597, 1311, 2466
BstV1I	GCAGC	7 cut(s)	376, 776, 1144, 1212, 1864, 2167, 2512
BstV2I	GAAGAC	1 cut(s)	2427
BstX2I	RGATCY	2 cut(s)	1523, 2636
BstYI	RGATCY	2 cut(s)	1523, 2636
BstZ17I	GTATAC	1 cut(s)	108
BstZI	CGGCCG	1 cut(s)	1008
Bsu36I	CCTNAGG	2 cut(s)	1497, 1518
BsuRI	GGCC	8 cut(s)	75, 157, 379, 420, 1010, 2344, 2689, 2773
BtgI	CCRYGG	2 cut(s)	990, 2690
BtgZI	GCGATG	1 cut(s)	890
BtrI	CACGTC	2 cut(s)	947, 2433
BtsI	GCAGTG	1 cut(s)	1483
BtsIMutI	CAGTG	3 cut(s)	722, 1483, 2610
BveI	ACCTGC	3 cut(s)	2221, 2300, 2528
Cac8I	GCNNGC	5 cut(s)	555, 564, 2268, 2464, 2665
CaiI	CAGNNNCTG	1 cut(s)	2230
CfoI	GCGC	4 cut(s)	553, 597, 1313, 1893
Cfr10I	RCCGGY	2 cut(s)	1196, 1301
Cfr13I	GGNCC	6 cut(s)	184, 994, 1075, 1213, 1739, 2342
CseI	GACGC	3 cut(s)	631, 1175, 2829
Csp6I	GTAC	6 cut(s)	213, 1549, 1588, 1832, 2165, 2262
CspAI	ACCGGT	1 cut(s)	1301
CspCI	CAANNNNNGTGG	2 cut(s)	1673, 1708
CviQI	GTAC	6 cut(s)	213, 1549, 1588, 1832, 2165, 2262
DraIII	CACNNNGTG	1 cut(s)	1342
EaeI	YGGCCR	3 cut(s)	1008, 2687, 2771
EagI	CGGCCG	1 cut(s)	1008
Eam1104I	CTCTTC	2 cut(s)	1148, 2646
EarI	CTCTTC	2 cut(s)	1148, 2646
EciI	GGCGGA	5 cut(s)	930, 991, 1009, 1016, 1136
Ecl136II	GAGCTC	1 cut(s)	2303
EclXI	CGGCCG	1 cut(s)	1008
Eco105I	TACGTA	1 cut(s)	1918
Eco130I	CCWWGG	5 cut(s)	76, 472, 990, 2530, 2690
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	2305
Eco31I	GGTCTC	2 cut(s)	1944, 2715
Eco47I	GGWCC	5 cut(s)	184, 994, 1075, 1213, 1739
Eco52I	CGGCCG	1 cut(s)	1008
Eco53kI	GAGCTC	1 cut(s)	2303
Eco57I	CTGAAG	2 cut(s)	1844, 2627
Eco72I	CACGTG	1 cut(s)	613
Eco81I	CCTNAGG	2 cut(s)	1497, 1518
Eco88I	CYCGRG	2 cut(s)	334, 2547
EcoICRI	GAGCTC	1 cut(s)	2303
EcoO109I	RGGNCCY	1 cut(s)	184
EcoRI	GAATTC	1 cut(s)	2579
EcoRII	CCWGG	2 cut(s)	420, 1427
EcoT14I	CCWWGG	5 cut(s)	76, 472, 990, 2530, 2690
EcoT22I	ATGCAT	4 cut(s)	209, 1261, 2355, 2373
EcoT38I	GRGCYC	1 cut(s)	2305
ErhI	CCWWGG	5 cut(s)	76, 472, 990, 2530, 2690
FalI	AAGNNNNNCTT	6 cut(s)	428, 460, 1842, 1874, 2547, 2579
FaqI	GGGAC	3 cut(s)	754, 980, 2714
FauI	CCCGC	6 cut(s)	37, 193, 559, 562, 2471, 2733
FauNDI	CATATG	2 cut(s)	112, 1651
FblI	GTMKAC	4 cut(s)	107, 402, 1050, 2294
FriOI	GRGCYC	1 cut(s)	2305
FspBI	CTAG	9 cut(s)	279, 503, 1101, 1721, 1749, 2054, 2708, 2738, 2745
GlaI	GCGC	4 cut(s)	552, 596, 1312, 1892
GsaI	CCCAGC	2 cut(s)	2274, 2451
GsuI	CTGGAG	4 cut(s)	900, 1664, 2289, 2319
HaeII	RGCGCY	1 cut(s)	554
HaeIII	GGCC	8 cut(s)	75, 157, 379, 420, 1010, 2344, 2689, 2773
HgaI	GACGC	3 cut(s)	631, 1175, 2829
HhaI	GCGC	4 cut(s)	553, 597, 1313, 1893
Hin1I	GRCGYC	3 cut(s)	642, 697, 2821
Hin6I	GCGC	4 cut(s)	551, 595, 1311, 1891
HinP1I	GCGC	4 cut(s)	551, 595, 1311, 1891
HincII	GTYRAC	2 cut(s)	1051, 2652
HindII	GTYRAC	2 cut(s)	1051, 2652
Hpy166II	GTNNAC	9 cut(s)	108, 403, 686, 1051, 1483, 2000, 2177, 2295, 2652
Hpy188III	TCNNGA	9 cut(s)	334, 436, 917, 1163, 1496, 1925, 2732, 2738, 2745
Hpy8I	GTNNAC	9 cut(s)	108, 403, 686, 1051, 1483, 2000, 2177, 2295, 2652
Hpy99I	CGWCG	6 cut(s)	142, 699, 702, 1016, 1052, 1169
HpyAV	CCTTC	4 cut(s)	369, 1460, 1868, 2577
HpyCH4III	ACNGT	3 cut(s)	731, 2458, 2841
HpyCH4IV	ACGT	7 cut(s)	612, 697, 767, 946, 1704, 1917, 2432
HpySE526I	ACGT	7 cut(s)	612, 697, 767, 946, 1704, 1917, 2432
Hsp92I	GRCGYC	3 cut(s)	642, 697, 2821
HspAI	GCGC	4 cut(s)	551, 595, 1311, 1891
Lsp1109I	GCAGC	7 cut(s)	376, 776, 1144, 1212, 1864, 2167, 2512
MaeI	CTAG	9 cut(s)	279, 503, 1101, 1721, 1749, 2054, 2708, 2738, 2745
MaeII	ACGT	7 cut(s)	612, 697, 767, 946, 1704, 1917, 2432
MaeIII	GTNAC	6 cut(s)	148, 947, 1234, 1422, 1579, 1674
MboII	GAAGA	7 cut(s)	534, 1135, 1832, 2219, 2432, 2616, 2633
MfeI	CAATTG	1 cut(s)	1614
MflI	RGATCY	2 cut(s)	1523, 2636
MhlI	GDGCHC	6 cut(s)	85, 688, 722, 2305, 2320, 2799
MluCI	AATT	8 cut(s)	453, 815, 1614, 1943, 2236, 2286, 2328, 2579
MlyI	GAGTC	6 cut(s)	339, 1901, 2559, 2696, 2735, 2752
MmeI	TCCRAC	5 cut(s)	42, 718, 788, 2045, 2823
Mph1103I	ATGCAT	4 cut(s)	209, 1261, 2355, 2373
MseI	TTAA	6 cut(s)	261, 446, 452, 606, 1980, 2240
MslI	CAYNNNNRTG	1 cut(s)	2603
MspA1I	CMGCKG	3 cut(s)	389, 586, 1117
MspCI	CTTAAG	2 cut(s)	260, 445
MspR9I	CCNGG	8 cut(s)	422, 975, 1248, 1429, 1449, 1460, 2512, 2807
MunI	CAATTG	1 cut(s)	1614
Mva1269I	GAATGC	4 cut(s)	1125, 1261, 1752, 2371
MvaI	CCWGG	2 cut(s)	422, 1429
MvnI	CGCG	3 cut(s)	597, 1311, 2466
NciI	CCSGG	6 cut(s)	975, 1248, 1449, 1460, 2512, 2807
NcoI	CCATGG	2 cut(s)	990, 2690
NdeI	CATATG	2 cut(s)	112, 1651
NlaIV	GGNNCC	6 cut(s)	133, 571, 979, 996, 1525, 1572
NmeAIII	GCCGAG	3 cut(s)	986, 1055, 2665
NmuCI	GTSAC	4 cut(s)	148, 947, 1234, 1579
NsiI	ATGCAT	4 cut(s)	209, 1261, 2355, 2373
NspI	RCATGY	4 cut(s)	278, 566, 2270, 2353
NspV	TTCGAA	2 cut(s)	1756, 2627
OliI	CACNNNNGTG	1 cut(s)	2603
PaeI	GCATGC	2 cut(s)	566, 2270
PaeR7I	CTCGAG	2 cut(s)	334, 2547
PaqCI	CACCTGC	2 cut(s)	2300, 2528
PceI	AGGCCT	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	3 cut(s)	14, 1161, 2671
PctI	GAATGC	4 cut(s)	1125, 1261, 1752, 2371
PfeI	GAWTC	4 cut(s)	65, 511, 628, 1732
Pfl23II	CGTACG	1 cut(s)	2261
PflFI	GACNNNGTC	1 cut(s)	641
PflMI	CCANNNNNTGG	2 cut(s)	1539, 2312
PinAI	ACCGGT	1 cut(s)	1301
PleI	GAGTC	6 cut(s)	338, 1901, 2558, 2696, 2735, 2752
PmaCI	CACGTG	1 cut(s)	613
PmlI	CACGTG	1 cut(s)	613
PpsI	GAGTC	6 cut(s)	338, 1901, 2558, 2696, 2735, 2752
Ppu21I	YACGTR	2 cut(s)	613, 1918
PpuMI	RGGWCCY	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	482
Psp124BI	GAGCTC	1 cut(s)	2305
Psp5II	RGGWCCY	1 cut(s)	184
Psp6I	CCWGG	2 cut(s)	420, 1427
PspCI	CACGTG	1 cut(s)	613
PspFI	CCCAGC	2 cut(s)	2270, 2447
PspGI	CCWGG	2 cut(s)	420, 1427
PspLI	CGTACG	1 cut(s)	2261
PspN4I	GGNNCC	6 cut(s)	133, 571, 979, 996, 1525, 1572
PspPI	GGNCC	6 cut(s)	184, 994, 1075, 1213, 1739, 2342
PspPPI	RGGWCCY	1 cut(s)	184
PspXI	VCTCGAGB	1 cut(s)	2547
PsrI	GAACNNNNNNTAC	2 cut(s)	2202, 2234
PstI	CTGCAG	1 cut(s)	394
PstNI	CAGNNNCTG	1 cut(s)	2230
PsuI	RGATCY	2 cut(s)	1523, 2636
PsyI	GACNNNGTC	1 cut(s)	641
PvuII	CAGCTG	1 cut(s)	586
RsaI	GTAC	6 cut(s)	214, 1550, 1589, 1833, 2166, 2263
RsaNI	GTAC	6 cut(s)	213, 1549, 1588, 1832, 2165, 2262
RseI	CAYNNNNRTG	1 cut(s)	2603
SacI	GAGCTC	1 cut(s)	2305
SalI	GTCGAC	1 cut(s)	1049
SaqAI	TTAA	6 cut(s)	261, 446, 452, 606, 1980, 2240
Sau96I	GGNCC	6 cut(s)	184, 994, 1075, 1213, 1739, 2342
ScaI	AGTACT	1 cut(s)	1550
SchI	GAGTC	6 cut(s)	339, 1901, 2559, 2696, 2735, 2752
ScrFI	CCNGG	8 cut(s)	422, 975, 1248, 1429, 1449, 1460, 2512, 2807
SduI	GDGCHC	6 cut(s)	85, 688, 722, 2305, 2320, 2799
SfcI	CTRYAG	3 cut(s)	390, 1894, 2202
Sfr274I	CTCGAG	2 cut(s)	334, 2547
SfuI	TTCGAA	2 cut(s)	1756, 2627
SinI	GGWCC	5 cut(s)	184, 994, 1075, 1213, 1739
SlaI	CTCGAG	2 cut(s)	334, 2547
SmiMI	CAYNNNNRTG	1 cut(s)	2603
SmlI	CTYRAG	4 cut(s)	260, 334, 445, 2547
SmoI	CTYRAG	4 cut(s)	260, 334, 445, 2547
SnaBI	TACGTA	1 cut(s)	1918
SphI	GCATGC	2 cut(s)	566, 2270
Sse9I	AATT	8 cut(s)	453, 815, 1614, 1943, 2236, 2286, 2328, 2579
SseBI	AGGCCT	1 cut(s)	379
SspI	AATATT	1 cut(s)	1885
SspMI	CTAG	9 cut(s)	279, 503, 1101, 1721, 1749, 2054, 2708, 2738, 2745
SstI	GAGCTC	1 cut(s)	2305
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	8 cut(s)	420, 973, 1246, 1427, 1447, 1458, 2510, 2805
StyI	CCWWGG	5 cut(s)	76, 472, 990, 2530, 2690
TaaI	ACNGT	3 cut(s)	731, 2458, 2841
TaiI	ACGT	7 cut(s)	615, 700, 770, 949, 1707, 1920, 2435
TaqII	GACCGA	2 cut(s)	420, 1230
TasI	AATT	8 cut(s)	453, 815, 1614, 1943, 2236, 2286, 2328, 2579
TatI	WGTACW	2 cut(s)	1548, 1587
TauI	GCSGC	5 cut(s)	36, 420, 1120, 1316, 2773
TfiI	GAWTC	4 cut(s)	65, 511, 628, 1732
Tru1I	TTAA	6 cut(s)	261, 446, 452, 606, 1980, 2240
Tru9I	TTAA	6 cut(s)	261, 446, 452, 606, 1980, 2240
TscAI	CASTG	3 cut(s)	729, 1490, 2610
TseFI	GTSAC	4 cut(s)	148, 947, 1234, 1579
TseI	GCWGC	7 cut(s)	389, 789, 1132, 1225, 1877, 2155, 2525
Tsp45I	GTSAC	4 cut(s)	148, 947, 1234, 1579
TspDTI	ATGAA	2 cut(s)	1045, 1578
TspGWI	ACGGA	3 cut(s)	1768, 1948, 2486
TspRI	CASTG	3 cut(s)	729, 1490, 2610
Tth111I	GACNNNGTC	1 cut(s)	641
Van91I	CCANNNNNTGG	2 cut(s)	1539, 2312
Vha464I	CTTAAG	2 cut(s)	260, 445
VneI	GTGCAC	1 cut(s)	684
VpaK11BI	GGWCC	5 cut(s)	184, 994, 1075, 1213, 1739
XapI	RAATTY	2 cut(s)	815, 2579
XbaI	TCTAGA	2 cut(s)	2737, 2744
XceI	RCATGY	4 cut(s)	278, 566, 2270, 2353
XcmI	CCANNNNNNNNNTGG	2 cut(s)	988, 1339
XhoI	CTCGAG	2 cut(s)	334, 2547
XmiI	GTMKAC	4 cut(s)	107, 402, 1050, 2294
XspI	CTAG	9 cut(s)	279, 503, 1101, 1721, 1749, 2054, 2708, 2738, 2745
ZraI	GACGTC	1 cut(s)	698
ZrmI	AGTACT	1 cut(s)	1550
Zsp2I	ATGCAT	4 cut(s)	209, 1261, 2355, 2373

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.