Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0005687

Physical Location & Seq

Genomic Coordinates Forward (+)

43866010 .. 43866744

Gene Structure 735 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0266300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGGTGGGTCGTCTTCTCGGACCAAAAGCTCGCTTTCCTGGTTTTAAAGGCACAATCTCTTCCATTTGGAGAATCAAATCGGGGATGACGATCCAAGATGCAGGTGATCGTTTCCTTTTCCAGTTTGAGCGTGAAGCTGACAGAAATCGTGCTCTCCATGGTGGACCGTGGATCTATCGGAATAGGATGCTTCTGTTGGGTGGTTATGATGGGGTTGGACCGGTGGAGGCAGTTCCACTGTGGAGCCTGGAGACGTGGGTGGCGGTGAAGGGTTTACCGGTAGGCCTGCGCAATAAGGCTGCCCTAACCCTAATCGGCTCAACCATTGGTCAGGTTATTCGCTTTGATCAAACGGCTCTCCATCGTAGGGAGGAGCAGCAAAGGATCCGGGTGATATTGGATACTCGTTGCCGGATCCGTTCATGGATGCTGGTTGAATTTTCGTCCACTGTTGAACTCGAGATCATCCTGATTTTCGAGAAAGTGAAGGGTTTATGTAGGGATTGTGGCTTGTTTGAACATGATGTTCTGGGCTGTGACGGTTTCCTAGTAAAAGAGAAAGAGGAGTTGCTGCAAAAGCCGCCGGCTGCTACGATGGCCGGGTTATCGCTGGAGGCTCCGGGGACAGATGCGGGCTATGTTGCTGCTTTGAGTTTGAACTTGGTGCACCAGAGCGTGATTGATACTGGTTTGGCAGTGGTGATGGCCCCAGAGTTGGTTGGGCTGCATACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0009987 GO:0010109 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048037 GO:0048038 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0060255 GO:0065007 GO:0071704 GO:0080005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

27.01

Weight (kDa)

8.37

Isoelectric Point (pI)

31.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	2 - 66	3e-09	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67840 AT1G67840
fragaria_vesca	FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g35670
malus_domestica	MD13G1099700.v1.1
prunus_persica	Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1
pyrus_communis	pycom12g22130 pycom13g08710
rosa_chinensis	RchiOBHm_Chr4g0433151
rosa_laevigata	RLG00000006779
rosa_multiflora	Rmu_sc0020880.1_g000001 Rmu_ssc0000295.1_g000015
rosa_roxburghii	Rroxscaffold_5G00374630
rosa_rugosa	Rorug04G0266300 Rorug04G0266400
rosa_samantha	Rh4AG320100 Rh4BG328300 Rh4CG343700 Rh4DG323700
rosa_wichuraiana	Rw4G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	92
Acc16I	TGCGCA	1 cut(s)	290
Acc36I	ACCTGC	1 cut(s)	92
AciI	CCGC	3 cut(s)	263, 581, 632
AclWI	GGATC	6 cut(s)	85, 179, 379, 392, 409, 422
AcoI	YGGCCR	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	437
AfiI	CCNNNNNNNGG	2 cut(s)	367, 715
AgeI	ACCGGT	2 cut(s)	220, 277
AgsI	TTSAA	4 cut(s)	437, 455, 518, 658
AjiI	CACGTC	1 cut(s)	255
AjnI	CCWGG	2 cut(s)	37, 246
AluBI	AGCT	2 cut(s)	29, 137
AluI	AGCT	2 cut(s)	29, 137
Alw21I	GWGCWC	2 cut(s)	154, 669
Alw26I	GTCTC	1 cut(s)	245
Alw44I	GTGCAC	1 cut(s)	665
AlwI	GGATC	6 cut(s)	85, 179, 379, 392, 409, 422
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	3 cut(s)	283, 597, 705
ApaLI	GTGCAC	1 cut(s)	665
ApeKI	GCWGC	6 cut(s)	299, 376, 571, 587, 644, 724
ApoI	RAATTY	1 cut(s)	437
AsiGI	ACCGGT	2 cut(s)	220, 277
AspLEI	GCGC	1 cut(s)	291
AspS9I	GGNCC	4 cut(s)	20, 164, 218, 706
AsuC2I	CCSGG	3 cut(s)	389, 601, 621
AsuHPI	GGTGA	4 cut(s)	116, 277, 403, 712
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	3 cut(s)	20, 164, 218
BaeGI	GKGCMC	1 cut(s)	669
BamHI	GGATCC	2 cut(s)	384, 414
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	154, 669
BbvI	GCAGC	6 cut(s)	286, 388, 558, 574, 631, 711
BccI	CCATC	4 cut(s)	203, 369, 589, 697
BceAI	ACGGC	1 cut(s)	369
BciT130I	CCWGG	2 cut(s)	39, 248
BciVI	GTATCC	1 cut(s)	394
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	3 cut(s)	389, 601, 621
BcoDI	GTCTC	1 cut(s)	245
BfaI	CTAG	1 cut(s)	548
BfuAI	ACCTGC	1 cut(s)	92
BfuI	GTATCC	1 cut(s)	394
BisI	GCNGC	7 cut(s)	300, 377, 572, 581, 588, 645, 725
BlsI	GCNGC	7 cut(s)	301, 378, 573, 582, 589, 646, 726
Bme1390I	CCNGG	5 cut(s)	39, 248, 389, 601, 621
Bme18I	GGWCC	3 cut(s)	20, 164, 218
BmeT110I	CYCGRG	1 cut(s)	458
BmgBI	CACGTC	1 cut(s)	255
BmgT120I	GGNCC	4 cut(s)	20, 164, 218, 706
BmiI	GGNNCC	5 cut(s)	245, 386, 416, 618, 708
BmrFI	CCNGG	5 cut(s)	39, 248, 389, 601, 621
BmsI	GCATC	4 cut(s)	88, 177, 417, 619
BpiI	GAAGAC	1 cut(s)	5
BpmI	CTGGAG	2 cut(s)	269, 632
BpuMI	CCSGG	3 cut(s)	389, 601, 621
BsaBI	GATNNNNATC	1 cut(s)	89
BsaJI	CCNNGG	3 cut(s)	157, 167, 620
BsaWI	WCCGGW	2 cut(s)	220, 277
Bsc4I	CCNNNNNNNGG	2 cut(s)	367, 715
Bse118I	RCCGGY	3 cut(s)	220, 277, 583
Bse1I	ACTGG	2 cut(s)	121, 691
Bse8I	GATNNNNATC	1 cut(s)	89
BseBI	CCWGG	2 cut(s)	39, 248
BseDI	CCNNGG	3 cut(s)	157, 167, 620
BseGI	GGATG	4 cut(s)	90, 192, 432, 465
BseJI	GATNNNNATC	1 cut(s)	89
BseLI	CCNNNNNNNGG	2 cut(s)	367, 715
BseNI	ACTGG	2 cut(s)	121, 691
BseRI	GAGGAG	2 cut(s)	386, 578
BseSI	GKGCMC	1 cut(s)	669
BseXI	GCAGC	6 cut(s)	286, 388, 558, 574, 631, 711
BshFI	GGCC	3 cut(s)	285, 599, 707
BshTI	ACCGGT	2 cut(s)	220, 277
BsiHKAI	GWGCWC	2 cut(s)	154, 669
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	7 cut(s)	221, 278, 388, 412, 584, 600, 620
BslFI	GGGAC	1 cut(s)	637
BslI	CCNNNNNNNGG	2 cut(s)	367, 715
BsmAI	GTCTC	1 cut(s)	245
BsmBI	CGTCTC	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	637
BsnI	GGCC	3 cut(s)	285, 599, 707
BsoBI	CYCGRG	1 cut(s)	458
Bsp1286I	GDGCHC	2 cut(s)	154, 669
Bsp143I	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
Bsp19I	CCATGG	1 cut(s)	157
BspACI	CCGC	3 cut(s)	263, 581, 632
BspANI	GGCC	3 cut(s)	285, 599, 707
BspLI	GGNNCC	5 cut(s)	245, 386, 416, 618, 708
BspMI	ACCTGC	1 cut(s)	92
BspPI	GGATC	6 cut(s)	85, 179, 379, 392, 409, 422
BsrFI	RCCGGY	3 cut(s)	220, 277, 583
BsrI	ACTGG	2 cut(s)	121, 691
BssAI	RCCGGY	3 cut(s)	220, 277, 583
BssECI	CCNNGG	3 cut(s)	157, 167, 620
BssMI	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
BssT1I	CCWWGG	1 cut(s)	157
Bst2UI	CCWGG	2 cut(s)	39, 248
Bst4CI	ACNGT	4 cut(s)	168, 240, 451, 542
Bst6I	CTCTTC	1 cut(s)	64
BstC8I	GCNNGC	4 cut(s)	31, 287, 585, 634
BstDSI	CCRYGG	2 cut(s)	157, 167
BstF5I	GGATG	4 cut(s)	90, 192, 432, 465
BstHHI	GCGC	1 cut(s)	291
BstKTI	GATC	7 cut(s)	93, 109, 174, 349, 387, 417, 465
BstMAI	GTCTC	1 cut(s)	245
BstMBI	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
BstMWI	GCNNNNNNNGC	3 cut(s)	577, 580, 596
BstNI	CCWGG	2 cut(s)	39, 248
BstSCI	CCNGG	5 cut(s)	37, 246, 387, 599, 619
BstSLI	GKGCMC	1 cut(s)	669
BstV1I	GCAGC	6 cut(s)	286, 388, 558, 574, 631, 711
BstV2I	GAAGAC	1 cut(s)	5
BstX2I	RGATCY	3 cut(s)	171, 384, 414
BstYI	RGATCY	3 cut(s)	171, 384, 414
BsuI	GTATCC	1 cut(s)	394
BsuRI	GGCC	3 cut(s)	285, 599, 707
BtgI	CCRYGG	2 cut(s)	157, 167
BtrI	CACGTC	1 cut(s)	255
BtsCI	GGATG	4 cut(s)	90, 192, 432, 465
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	3 cut(s)	236, 447, 702
BveI	ACCTGC	1 cut(s)	92
Cac8I	GCNNGC	4 cut(s)	31, 287, 585, 634
CfoI	GCGC	1 cut(s)	291
Cfr10I	RCCGGY	3 cut(s)	220, 277, 583
Cfr13I	GGNCC	4 cut(s)	20, 164, 218, 706
CspAI	ACCGGT	2 cut(s)	220, 277
CviAII	CATG	3 cut(s)	158, 423, 521
DpnI	GATC	7 cut(s)	92, 108, 173, 348, 386, 416, 464
DpnII	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
DraI	TTTAAA	1 cut(s)	46
EaeI	YGGCCR	1 cut(s)	597
Eam1104I	CTCTTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	64
Eco130I	CCWWGG	1 cut(s)	157
Eco147I	AGGCCT	1 cut(s)	285
Eco47I	GGWCC	3 cut(s)	20, 164, 218
Eco88I	CYCGRG	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	37, 246
EcoT14I	CCWWGG	1 cut(s)	157
ErhI	CCWWGG	1 cut(s)	157
Esp3I	CGTCTC	1 cut(s)	245
FaeI	CATG	3 cut(s)	161, 426, 524
FaiI	YATR	7 cut(s)	159, 207, 424, 496, 522, 639, 729
FaqI	GGGAC	1 cut(s)	637
FatI	CATG	3 cut(s)	157, 422, 520
FauI	CCCGC	1 cut(s)	625
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	7 cut(s)	300, 377, 572, 581, 588, 645, 725
FokI	GGATG	4 cut(s)	97, 199, 439, 452
Fsp4HI	GCNGC	7 cut(s)	300, 377, 572, 581, 588, 645, 725
FspBI	CTAG	1 cut(s)	548
FspI	TGCGCA	1 cut(s)	290
GlaI	GCGC	1 cut(s)	290
GluI	GCNGC	7 cut(s)	300, 377, 572, 581, 588, 645, 725
GsuI	CTGGAG	2 cut(s)	269, 632
HaeIII	GGCC	3 cut(s)	285, 599, 707
HapII	CCGG	7 cut(s)	221, 278, 388, 412, 584, 600, 620
HhaI	GCGC	1 cut(s)	291
Hin1II	CATG	3 cut(s)	161, 426, 524
Hin6I	GCGC	1 cut(s)	289
HinP1I	GCGC	1 cut(s)	289
HinfI	GANTC	1 cut(s)	72
HpaII	CCGG	7 cut(s)	221, 278, 388, 412, 584, 600, 620
HphI	GGTGA	4 cut(s)	116, 277, 403, 712
Hpy166II	GTNNAC	4 cut(s)	164, 275, 447, 667
Hpy188I	TCNGA	2 cut(s)	20, 180
Hpy188III	TCNNGA	3 cut(s)	460, 469, 478
Hpy8I	GTNNAC	4 cut(s)	164, 275, 447, 667
HpyAV	CCTTC	2 cut(s)	262, 481
HpyCH4III	ACNGT	4 cut(s)	168, 240, 451, 542
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	4 cut(s)	101, 574, 667, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	577, 580, 596
HpySE526I	ACGT	1 cut(s)	254
Hsp92II	CATG	3 cut(s)	161, 426, 524
HspAI	GCGC	1 cut(s)	289
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
LmnI	GCTCC	3 cut(s)	243, 373, 622
Lsp1109I	GCAGC	6 cut(s)	286, 388, 558, 574, 631, 711
LweI	GCATC	4 cut(s)	88, 177, 417, 619
MaeI	CTAG	1 cut(s)	548
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	536
MalI	GATC	7 cut(s)	92, 108, 173, 348, 386, 416, 464
MboI	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
MboII	GAAGA	2 cut(s)	5, 51
MflI	RGATCY	3 cut(s)	171, 384, 414
MhlI	GDGCHC	2 cut(s)	154, 669
MluCI	AATT	1 cut(s)	437
MmeI	TCCRAC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	220, 364, 556, 607
MroNI	GCCGGC	1 cut(s)	583
MseI	TTAA	1 cut(s)	45
MspI	CCGG	7 cut(s)	221, 278, 388, 412, 584, 600, 620
MspR9I	CCNGG	5 cut(s)	39, 248, 389, 601, 621
MvaI	CCWGG	2 cut(s)	39, 248
MwoI	GCNNNNNNNGC	3 cut(s)	577, 580, 596
NaeI	GCCGGC	1 cut(s)	585
NciI	CCSGG	3 cut(s)	389, 601, 621
NcoI	CCATGG	1 cut(s)	157
NdeII	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
NgoMIV	GCCGGC	1 cut(s)	583
NlaIII	CATG	3 cut(s)	161, 426, 524
NlaIV	GGNNCC	5 cut(s)	245, 386, 416, 618, 708
NmuCI	GTSAC	1 cut(s)	536
NsbI	TGCGCA	1 cut(s)	290
PaeR7I	CTCGAG	1 cut(s)	458
PaqCI	CACCTGC	1 cut(s)	92
PceI	AGGCCT	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	86
PdiI	GCCGGC	1 cut(s)	585
PfeI	GAWTC	1 cut(s)	72
PinAI	ACCGGT	2 cut(s)	220, 277
PkrI	GCNGC	7 cut(s)	301, 378, 573, 582, 589, 646, 726
Psp6I	CCWGG	2 cut(s)	37, 246
PspGI	CCWGG	2 cut(s)	37, 246
PspN4I	GGNNCC	5 cut(s)	245, 386, 416, 618, 708
PspPI	GGNCC	4 cut(s)	20, 164, 218, 706
PsuI	RGATCY	3 cut(s)	171, 384, 414
SaqAI	TTAA	1 cut(s)	45
SatI	GCNGC	7 cut(s)	300, 377, 572, 581, 588, 645, 725
Sau3AI	GATC	7 cut(s)	90, 106, 171, 346, 384, 414, 462
Sau96I	GGNCC	4 cut(s)	20, 164, 218, 706
ScrFI	CCNGG	5 cut(s)	39, 248, 389, 601, 621
SduI	GDGCHC	2 cut(s)	154, 669
SetI	ASST	6 cut(s)	31, 106, 139, 257, 336, 734
SfaNI	GCATC	4 cut(s)	88, 177, 417, 619
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	3 cut(s)	20, 164, 218
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	437
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	3 cut(s)	263, 581, 632
SspMI	CTAG	1 cut(s)	548
StuI	AGGCCT	1 cut(s)	285
StyD4I	CCNGG	5 cut(s)	37, 246, 387, 599, 619
StyI	CCWWGG	1 cut(s)	157
TaaI	ACNGT	4 cut(s)	168, 240, 451, 542
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	2 cut(s)	459, 477
TasI	AATT	1 cut(s)	437
TauI	GCSGC	1 cut(s)	583
TfiI	GAWTC	1 cut(s)	72
Tru1I	TTAA	1 cut(s)	45
Tru9I	TTAA	1 cut(s)	45
TscAI	CASTG	3 cut(s)	243, 454, 702
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	6 cut(s)	299, 376, 571, 587, 644, 724
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	1 cut(s)	411
TspGWI	ACGGA	1 cut(s)	407
TspRI	CASTG	3 cut(s)	243, 454, 702
VneI	GTGCAC	1 cut(s)	665
VpaK11BI	GGWCC	3 cut(s)	20, 164, 218
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	458
XspI	CTAG	1 cut(s)	548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.