Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020880.1

Orthogroup ID

OG0005687

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2086

Gene Structure 2086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020880.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1111 bp

gggatccgatgccatatcttgggatgagtactctttggagaatgaaccggaacgagtagtgacaatgtacaagtttagtgcggagcagagatcaattgctatcaacatttctcggtctttagctatggcatatgttatggatcagaaagcaatgttactccagcaatcatcctggcagaataacgtaaggatgagcagtctagttgagcagattcgtggtcctctttctagcattcgaactttgagtaaaatgttgtccttgcatacaaagagaagtgagatttcttatgacattgttgaagatatactggtacaaggcgatcaagtgaaagatacccttcagcaactccaagatgctgtttacttgactaaggctaatattattcgctgtagcgaacaagactctacatatgtatatcctgacgcacggaggtctcaattattgaataacttgcccagtgatagttccagcattaagatgcaaatttctggtgaacaactttctctaaatgctccaaccaaagatatagagataccgatgccacctctagcccttgctcctttacggcaagatggaattagaccatgcaatgtttctgatatactggtagatttggtagaagctgtaagacctcttgcccataaccagcagcgtagagtagaactgagtgaacttggaaaatctttgcaagtagctgtagaagaacctgctttacgacaggctctgagcaatttaatcgaaagtgcattattgcgtacgcatgctgggggaaaggtagaaattgtgtctactgaagctccagcaggtggtgctcttgtagtaattgatgacgatgggcctgacatgcattatatgacacagatgcattccctcgcaccctttggaactgatctcctctcagaaaatatggttgaagacaacatgacatggaactttgttgctgggctgactgttgcccgcgagatactcgaaagttatggttgtgtagtccgtgtcatatcaccccggaataaagatgctgcccttggagcaggtggaactcgagtcgaaatctggcttccttctctcatggaattctctggtattgatggccctcttcaggatgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004673 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009593 GO:0009987 GO:0010109 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0016775 GO:0018106 GO:0018193 GO:0018202 GO:0019222 GO:0019538 GO:0031323 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0048037 GO:0048038 GO:0050789 GO:0050794 GO:0050896 GO:0051606 GO:0051775 GO:0051776 GO:0060255 GO:0065007 GO:0071704 GO:0080005 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00760 ko01100 map00760 map01100

Pfam Domains

Protein Families

No domains found.

Protein Analysis

369

Amino Acids

40.78

Weight (kDa)

4.75

Isoelectric Point (pI)

68.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005687)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67840 AT1G67840
fragaria_vesca	FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g25720 FvH4_4g35670
malus_domestica	MD13G1099700.v1.1
prunus_persica	Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1 Prupe.1G246300_v2.0.a1
pyrus_communis	pycom12g22130 pycom13g08710
rosa_chinensis	RchiOBHm_Chr4g0433151
rosa_laevigata	RLG00000006779
rosa_multiflora	Rmu_sc0020880.1_g000001 Rmu_ssc0000295.1_g000015
rosa_roxburghii	Rroxscaffold_5G00374630
rosa_rugosa	Rorug04G0266300 Rorug04G0266400
rosa_samantha	Rh4AG320100 Rh4BG328300 Rh4CG343700 Rh4DG323700
rosa_wichuraiana	Rw4G027790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	795, 1023
Acc36I	ACCTGC	3 cut(s)	716, 795, 1023
AccB7I	CCANNNNNTGG	2 cut(s)	19, 807
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	1 cut(s)	961
AciI	CCGC	2 cut(s)	81, 959
AclWI	GGATC	2 cut(s)	11, 148
AcsI	RAATTY	2 cut(s)	484, 1074
AcuI	CTGAAG	3 cut(s)	324, 814, 1083
AfaI	GTAC	4 cut(s)	30, 69, 313, 758
AfiI	CCNNNNNNNGG	3 cut(s)	19, 807, 1100
AgsI	TTSAA	3 cut(s)	300, 446, 915
AjnI	CCWGG	1 cut(s)	171
AluBI	AGCT	4 cut(s)	123, 624, 696, 798
AluI	AGCT	4 cut(s)	123, 624, 696, 798
Alw21I	GWGCWC	1 cut(s)	815
Alw26I	GTCTC	1 cut(s)	439
AlwI	GGATC	2 cut(s)	11, 148
AlwNI	CAGNNNCTG	1 cut(s)	725
Ama87I	CYCGRG	1 cut(s)	1042
AoxI	GGCC	2 cut(s)	837, 1091
ApeKI	GCWGC	2 cut(s)	650, 1020
ApoI	RAATTY	2 cut(s)	484, 1074
AspS9I	GGNCC	3 cut(s)	219, 837, 1092
AsuC2I	CCSGG	1 cut(s)	1007
AsuHPI	GGTGA	2 cut(s)	504, 994
AsuII	TTCGAA	1 cut(s)	236
AvaI	CYCGRG	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	219
BamHI	GGATCC	1 cut(s)	3
BbsI	GAAGAC	1 cut(s)	922
Bbv12I	GWGCWC	1 cut(s)	815
BbvI	GCAGC	2 cut(s)	662, 1007
BccI	CCATC	3 cut(s)	567, 828, 1083
BceAI	ACGGC	1 cut(s)	582
BcgI	CGANNNNNNTGC	2 cut(s)	719, 753
BciT130I	CCWGG	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	1007
BcoDI	GTCTC	1 cut(s)	439
BfaI	CTAG	3 cut(s)	201, 229, 549
BfmI	CTRYAG	2 cut(s)	389, 697
BfuAI	ACCTGC	3 cut(s)	716, 795, 1023
BisI	GCNGC	2 cut(s)	651, 1021
BlsI	GCNGC	2 cut(s)	652, 1022
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	173, 1007
Bme18I	GGWCC	1 cut(s)	219
BmeT110I	CYCGRG	1 cut(s)	1042
BmgT120I	GGNCC	3 cut(s)	219, 837, 1092
BmiI	GGNNCC	1 cut(s)	5
BmrFI	CCNGG	2 cut(s)	173, 1007
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	5 cut(s)	344, 469, 529, 853, 1007
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	922
BpmI	CTGGAG	2 cut(s)	144, 784
Bpu14I	TTCGAA	1 cut(s)	236
BpuMI	CCSGG	1 cut(s)	1007
BsaI	GGTCTC	1 cut(s)	439
BsaJI	CCNNGG	2 cut(s)	1005, 1025
BsaWI	WCCGGW	1 cut(s)	47
BsaXI	ACNNNNNCTCC	2 cut(s)	782, 812
Bsc4I	CCNNNNNNNGG	3 cut(s)	19, 807, 1100
Bse1I	ACTGG	3 cut(s)	313, 457, 610
Bse3DI	GCAATG	2 cut(s)	157, 596
BseBI	CCWGG	1 cut(s)	173
BseDI	CCNNGG	2 cut(s)	1005, 1025
BseGI	GGATG	4 cut(s)	29, 168, 196, 1109
BseLI	CCNNNNNNNGG	3 cut(s)	19, 807, 1100
BseMI	GCAATG	2 cut(s)	157, 596
BseMII	CTCAG	3 cut(s)	657, 717, 913
BseNI	ACTGG	3 cut(s)	313, 457, 610
BseRI	GAGGAG	1 cut(s)	885
BseXI	GCAGC	2 cut(s)	662, 1007
BseYI	CCCAGC	2 cut(s)	765, 942
Bsh1236I	CGCG	1 cut(s)	961
BshFI	GGCC	2 cut(s)	839, 1093
BsiHKAI	GWGCWC	1 cut(s)	815
BsiHKCI	CYCGRG	1 cut(s)	1042
BsiSI	CCGG	2 cut(s)	48, 1007
BsiWI	CGTACG	1 cut(s)	756
BslI	CCNNNNNNNGG	3 cut(s)	19, 807, 1100
BsmAI	GTCTC	1 cut(s)	439
BsmI	GAATGC	2 cut(s)	232, 866
BsnI	GGCC	2 cut(s)	839, 1093
Bso31I	GGTCTC	1 cut(s)	439
BsoBI	CYCGRG	1 cut(s)	1042
Bsp119I	TTCGAA	1 cut(s)	236
Bsp1286I	GDGCHC	1 cut(s)	815
Bsp1407I	TGTACA	1 cut(s)	67
Bsp143I	GATC	5 cut(s)	3, 90, 140, 320, 890
BspACI	CCGC	2 cut(s)	81, 959
BspANI	GGCC	2 cut(s)	839, 1093
BspCNI	CTCAG	3 cut(s)	658, 718, 912
BspFNI	CGCG	1 cut(s)	961
BspLI	GGNNCC	1 cut(s)	5
BspMI	ACCTGC	3 cut(s)	716, 795, 1023
BspPI	GGATC	2 cut(s)	11, 148
BspT104I	TTCGAA	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	439
BsrDI	GCAATG	2 cut(s)	157, 596
BsrGI	TGTACA	1 cut(s)	67
BsrI	ACTGG	3 cut(s)	313, 457, 610
BssECI	CCNNGG	2 cut(s)	1005, 1025
BssMI	GATC	5 cut(s)	3, 90, 140, 320, 890
BssT1I	CCWWGG	1 cut(s)	1025
Bst2UI	CCWGG	1 cut(s)	173
Bst4CI	ACNGT	1 cut(s)	953
Bst6I	CTCTTC	1 cut(s)	1102
BstAPI	GCANNNNNTGC	1 cut(s)	810
BstAUI	TGTACA	1 cut(s)	67
BstBI	TTCGAA	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	763, 959
BstDEI	CTNAG	4 cut(s)	370, 666, 726, 899
BstF5I	GGATG	4 cut(s)	29, 168, 196, 1109
BstFNI	CGCG	1 cut(s)	961
BstKTI	GATC	5 cut(s)	6, 93, 143, 323, 893
BstMAI	GTCTC	1 cut(s)	439
BstMBI	GATC	5 cut(s)	3, 90, 140, 320, 890
BstMWI	GCNNNNNNNGC	3 cut(s)	810, 845, 1029
BstNI	CCWGG	1 cut(s)	173
BstNSI	RCATGY	2 cut(s)	765, 848
BstSCI	CCNGG	2 cut(s)	171, 1005
BstSFI	CTRYAG	2 cut(s)	389, 697
BstUI	CGCG	1 cut(s)	961
BstV1I	GCAGC	2 cut(s)	662, 1007
BstV2I	GAAGAC	1 cut(s)	922
BstX2I	RGATCY	1 cut(s)	3
BstYI	RGATCY	1 cut(s)	3
BsuRI	GGCC	2 cut(s)	839, 1093
BtsCI	GGATG	4 cut(s)	29, 168, 196, 1109
BtsIMutI	CAGTG	1 cut(s)	464
BveI	ACCTGC	3 cut(s)	716, 795, 1023
Cac8I	GCNNGC	2 cut(s)	763, 959
CaiI	CAGNNNCTG	1 cut(s)	725
Cfr13I	GGNCC	3 cut(s)	219, 837, 1092
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	4 cut(s)	29, 68, 312, 757
CviAII	CATG	6 cut(s)	586, 762, 845, 923, 928, 1070
CviQI	GTAC	4 cut(s)	29, 68, 312, 757
DdeI	CTNAG	4 cut(s)	370, 666, 726, 899
DpnI	GATC	5 cut(s)	5, 92, 142, 322, 892
DpnII	GATC	5 cut(s)	3, 90, 140, 320, 890
Eam1104I	CTCTTC	1 cut(s)	1102
EarI	CTCTTC	1 cut(s)	1102
Eco130I	CCWWGG	1 cut(s)	1025
Eco31I	GGTCTC	1 cut(s)	439
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	3 cut(s)	324, 814, 1083
Eco88I	CYCGRG	1 cut(s)	1042
EcoRI	GAATTC	1 cut(s)	1074
EcoRII	CCWGG	1 cut(s)	171
EcoT14I	CCWWGG	1 cut(s)	1025
EcoT22I	ATGCAT	2 cut(s)	850, 868
ErhI	CCWWGG	1 cut(s)	1025
FaeI	CATG	6 cut(s)	589, 765, 848, 926, 931, 1073
FalI	AAGNNNNNCTT	2 cut(s)	322, 354
FatI	CATG	6 cut(s)	585, 761, 844, 922, 927, 1069
FauI	CCCGC	1 cut(s)	966
FauNDI	CATATG	2 cut(s)	131, 410
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	2 cut(s)	651, 1021
FokI	GGATG	3 cut(s)	36, 155, 203
Fsp4HI	GCNGC	2 cut(s)	651, 1021
FspBI	CTAG	3 cut(s)	201, 229, 549
GluI	GCNGC	2 cut(s)	651, 1021
GsaI	CCCAGC	2 cut(s)	769, 946
GsuI	CTGGAG	2 cut(s)	144, 784
HaeIII	GGCC	2 cut(s)	839, 1093
HapII	CCGG	2 cut(s)	48, 1007
HgaI	GACGC	1 cut(s)	432
Hin1II	CATG	6 cut(s)	589, 765, 848, 926, 931, 1073
HinfI	GANTC	3 cut(s)	212, 402, 1045
HpaII	CCGG	2 cut(s)	48, 1007
HphI	GGTGA	2 cut(s)	504, 994
Hpy166II	GTNNAC	4 cut(s)	362, 495, 672, 790
Hpy188I	TCNGA	5 cut(s)	8, 145, 599, 727, 902
Hpy188III	TCNNGA	2 cut(s)	420, 1101
Hpy8I	GTNNAC	4 cut(s)	362, 495, 672, 790
HpyAV	CCTTC	2 cut(s)	348, 1072
HpyCH4III	ACNGT	1 cut(s)	953
HpyCH4IV	ACGT	1 cut(s)	184
HpyCH4V	TGCA	7 cut(s)	263, 482, 589, 689, 747, 848, 866
HpyF10VI	GCNNNNNNNGC	3 cut(s)	810, 845, 1029
HpyF3I	CTNAG	4 cut(s)	370, 666, 726, 899
HpySE526I	ACGT	1 cut(s)	184
Hsp92II	CATG	6 cut(s)	589, 765, 848, 926, 931, 1073
Kzo9I	GATC	5 cut(s)	3, 90, 140, 320, 890
LmnI	GCTCC	5 cut(s)	83, 518, 563, 803, 1029
Lsp1109I	GCAGC	2 cut(s)	662, 1007
LweI	GCATC	5 cut(s)	344, 469, 529, 853, 1007
MaeI	CTAG	3 cut(s)	201, 229, 549
MaeII	ACGT	1 cut(s)	184
MaeIII	GTNAC	2 cut(s)	59, 154
MalI	GATC	5 cut(s)	5, 92, 142, 322, 892
MboI	GATC	5 cut(s)	3, 90, 140, 320, 890
MboII	GAAGA	4 cut(s)	312, 714, 927, 1089
MfeI	CAATTG	1 cut(s)	94
MflI	RGATCY	1 cut(s)	3
MhlI	GDGCHC	1 cut(s)	815
MluCI	AATT	8 cut(s)	94, 438, 484, 577, 731, 781, 823, 1074
MlyI	GAGTC	2 cut(s)	396, 1054
MmeI	TCCRAC	1 cut(s)	540
MnlI	CCTC	7 cut(s)	232, 424, 556, 643, 882, 906, 1105
Mph1103I	ATGCAT	2 cut(s)	850, 868
MseI	TTAA	2 cut(s)	475, 735
MslI	CAYNNNNRTG	1 cut(s)	477
MspI	CCGG	2 cut(s)	48, 1007
MspR9I	CCNGG	2 cut(s)	173, 1007
MunI	CAATTG	1 cut(s)	94
Mva1269I	GAATGC	2 cut(s)	232, 866
MvaI	CCWGG	1 cut(s)	173
MvnI	CGCG	1 cut(s)	961
MwoI	GCNNNNNNNGC	3 cut(s)	810, 845, 1029
NciI	CCSGG	1 cut(s)	1007
NdeI	CATATG	2 cut(s)	131, 410
NdeII	GATC	5 cut(s)	3, 90, 140, 320, 890
NlaIII	CATG	6 cut(s)	589, 765, 848, 926, 931, 1073
NlaIV	GGNNCC	1 cut(s)	5
NmuCI	GTSAC	1 cut(s)	59
NsiI	ATGCAT	2 cut(s)	850, 868
NspI	RCATGY	2 cut(s)	765, 848
NspV	TTCGAA	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	765
PaeR7I	CTCGAG	1 cut(s)	1042
PaqCI	CACCTGC	2 cut(s)	795, 1023
PctI	GAATGC	2 cut(s)	232, 866
PfeI	GAWTC	1 cut(s)	212
Pfl23II	CGTACG	1 cut(s)	756
PflMI	CCANNNNNTGG	2 cut(s)	19, 807
PkrI	GCNGC	2 cut(s)	652, 1022
PleI	GAGTC	2 cut(s)	396, 1053
PpsI	GAGTC	2 cut(s)	396, 1053
Psp6I	CCWGG	1 cut(s)	171
PspFI	CCCAGC	2 cut(s)	765, 942
PspGI	CCWGG	1 cut(s)	171
PspLI	CGTACG	1 cut(s)	756
PspN4I	GGNNCC	1 cut(s)	5
PspPI	GGNCC	3 cut(s)	219, 837, 1092
PspXI	VCTCGAGB	1 cut(s)	1042
PsrI	GAACNNNNNNTAC	2 cut(s)	697, 729
PstNI	CAGNNNCTG	1 cut(s)	725
PsuI	RGATCY	1 cut(s)	3
RsaI	GTAC	4 cut(s)	30, 69, 313, 758
RsaNI	GTAC	4 cut(s)	29, 68, 312, 757
RseI	CAYNNNNRTG	1 cut(s)	477
SaqAI	TTAA	2 cut(s)	475, 735
SatI	GCNGC	2 cut(s)	651, 1021
Sau3AI	GATC	5 cut(s)	3, 90, 140, 320, 890
Sau96I	GGNCC	3 cut(s)	219, 837, 1092
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	2 cut(s)	396, 1054
ScrFI	CCNGG	2 cut(s)	173, 1007
SduI	GDGCHC	1 cut(s)	815
SfaNI	GCATC	5 cut(s)	344, 469, 529, 853, 1007
SfcI	CTRYAG	2 cut(s)	389, 697
Sfr274I	CTCGAG	1 cut(s)	1042
SfuI	TTCGAA	1 cut(s)	236
SinI	GGWCC	1 cut(s)	219
SlaI	CTCGAG	1 cut(s)	1042
SmiMI	CAYNNNNRTG	1 cut(s)	477
SmlI	CTYRAG	1 cut(s)	1042
SmoI	CTYRAG	1 cut(s)	1042
SphI	GCATGC	1 cut(s)	765
Sse9I	AATT	8 cut(s)	94, 438, 484, 577, 731, 781, 823, 1074
SsiI	CCGC	2 cut(s)	81, 959
SspI	AATATT	1 cut(s)	380
SspMI	CTAG	3 cut(s)	201, 229, 549
StyD4I	CCNGG	2 cut(s)	171, 1005
StyI	CCWWGG	1 cut(s)	1025
TaaI	ACNGT	1 cut(s)	953
TaiI	ACGT	1 cut(s)	187
TaqI	TCGA	5 cut(s)	236, 739, 970, 1043, 1048
TaqII	GACCGA	1 cut(s)	103
TasI	AATT	8 cut(s)	94, 438, 484, 577, 731, 781, 823, 1074
TatI	WGTACW	2 cut(s)	28, 67
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	2 cut(s)	475, 735
Tru9I	TTAA	2 cut(s)	475, 735
TscAI	CASTG	1 cut(s)	464
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	650, 1020
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	58
TspGWI	ACGGA	2 cut(s)	443, 981
TspRI	CASTG	1 cut(s)	464
Van91I	CCANNNNNTGG	2 cut(s)	19, 807
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	2 cut(s)	484, 1074
XceI	RCATGY	2 cut(s)	765, 848
XhoI	CTCGAG	1 cut(s)	1042
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	3 cut(s)	201, 229, 549
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	2 cut(s)	850, 868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.