Rw4G027790

Histidine kinase-like ATPases

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
Physical Location & Seq
Reverse (-)
54514333 .. 54517782
3450 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G027790.1

Sequence Viewer

Length: 1350 bp
ATGCTTCTCTCTGCTGCAATCACTCACCAACACCCCTCAAATTCCACTTCTACCCTCCTCCTTTCCCCTATTTCCCCCAAACTCCCCTCCACCTCCCTCAAACCCCCTCAGCGACCTCACCTCCTCCCCAACGCCTCCCTCCAGAACCCTACCCCCCAAACCATCCGCCACGTCACCCACACCCCCTCCGATGCGGACCCCGAAGCCAACAACTCCATGGTCCCCTCCGCCTCCGCCGTCGCCTCCGCCATCCGCCGAGCATCCACCTCCCCCGTCGACTTCATGCAGAGGATCGACAAGGACCAGAAAAACGGCATCGTTTTGCCCAGCTCCGACTTCCAGCGACTCTGCATTCAGCAGCTCGACCTCTTCCGCCGTATCGTCCATCCCGACGCTCTCCTCTCGGTATATGTAAGACCAGCTGGTAGCTATGTGATGGACCGATTAGAGCTGCGTAGAGTGACTTGCTATCCCGGCGTGAATGCATCAGATATTGTGATTTTGGTTGGCAGTTTTAGTGTTGCCACCGGTTTTCGCGCCGCAGAGGCAGTTCTTTCCAATCACAAAGTGGAAGTTATAGCGGAGTGTAAAGCTGTGGTTTTTCCTATGGTGAAGCACCCTTTTGTGGTGGGTTTCCTGGTTGCTGAGTTACCCAGGATGGAAATGCCGTCACCGGGGAGTGTCAGGGGTGAAGGCTGTGATTTGGTTCACTGCCCCACTCCTGAGGAAGCCTATGCTTCGCCTCAGGGATCCGATGCCATATCTTGGGATGAGTACTCTTTGGAGAATGAACCGGAACGAGTAGTGACAATGTACAAGTTTAGTGCGGAGCAGAGATCAATTGCTATCAACATTTCTCGGTCTTTAGCTATGGCATATGTTATGGATCAGAAAGCAATGTTACTCCAGCAATCATCGTGGCAGAATAACGTAAGGATGAGTAGTCTAGTTGAGCAGATTCGTGGTCCTCTTTCTAGCATTCGAACTTTGAGTAAAATGTTGTCCATGCATACAAAGAGAAGTGAGATTTCTTATGACATTGCTGAAGATATACTGGTACAAGGCGATCAAGTGAAAGATACCCTTCAGCAACTCCAAGATGCTGTTTACTTGACTAAGGCTAATATTATTCGCTGTAGCGAACAAGACTCTACATATGTATATCCTGACGCACGGAGGTCCCAATTATTGAATAACTTGCCCAGTGATAGTTCCAGCATTAAGATGCAAATTTCTGGTGAACAACTTTCTCTAAATGCTCCAACCAAAGATATAGAGATACCGATGCCACCTCTAGCCCTTGCTCCTTTACGGCAAGATGGAATTAGGAAGACCATGCAATGTTTCTGA

Protein Analysis

449

Amino Acids

49.62

Weight (kDa)

6.56

Isoelectric Point (pI)

60.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 765
AccI GTMKAC 1 cut(s) 276
AccII CGCG 1 cut(s) 537
AclWI GGATC 4 cut(s) 299, 744, 757, 894
AcsI RAATTY 2 cut(s) 40, 1230
AcuI CTGAAG 2 cut(s) 1065, 1070
AdeI CACNNNGTG 1 cut(s) 568
AfaI GTAC 3 cut(s) 776, 815, 1059
AfiI CCNNNNNNNGG 3 cut(s) 625, 674, 765
AgeI ACCGGT 1 cut(s) 527
AgsI TTSAA 1 cut(s) 1192
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 2 cut(s) 636, 653
AluBI AGCT 7 cut(s) 330, 361, 422, 429, 451, 593, 869
AluI AGCT 7 cut(s) 330, 361, 422, 429, 451, 593, 869
AlwI GGATC 4 cut(s) 299, 744, 757, 894
ApeKI GCWGC 3 cut(s) 14, 358, 451
ApoI RAATTY 2 cut(s) 40, 1230
AsiGI ACCGGT 1 cut(s) 527
AspLEI GCGC 1 cut(s) 539
AspS9I GGNCC 6 cut(s) 196, 220, 301, 439, 965, 1179
AsuC2I CCSGG 2 cut(s) 474, 675
AsuHPI GGTGA 7 cut(s) 17, 110, 166, 622, 663, 701, 1250
AsuII TTCGAA 1 cut(s) 982
AvaII GGWCC 6 cut(s) 196, 220, 301, 439, 965, 1179
AxyI CCTNAGG 2 cut(s) 723, 744
BamHI GGATCC 1 cut(s) 749
BbsI GAAGAC 1 cut(s) 1337
BbvCI CCTCAGC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 370, 438
BccI CCATC 6 cut(s) 170, 257, 393, 430, 652, 1313
BceAI ACGGC 5 cut(s) 221, 328, 360, 652, 1328
BciT130I CCWGG 2 cut(s) 638, 655
BcnI CCSGG 2 cut(s) 474, 675
BfaI CTAG 3 cut(s) 947, 975, 1295
BfmI CTRYAG 1 cut(s) 1135
BglI GCCNNNNNGGC 1 cut(s) 545
BisI GCNGC 4 cut(s) 15, 359, 452, 540
BlsI GCNGC 4 cut(s) 16, 360, 453, 541
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 4 cut(s) 474, 638, 655, 675
Bme18I GGWCC 6 cut(s) 196, 220, 301, 439, 965, 1179
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 6 cut(s) 196, 220, 301, 439, 965, 1179
BmiI GGNNCC 4 cut(s) 198, 222, 751, 1181
BmrFI CCNGG 4 cut(s) 474, 638, 655, 675
BmrI ACTGGG 1 cut(s) 1197
BmsI GCATC 8 cut(s) 181, 269, 324, 494, 745, 1090, 1215, 1275
BmuI ACTGGG 1 cut(s) 1197
BpiI GAAGAC 1 cut(s) 1337
BpmI CTGGAG 2 cut(s) 125, 890
Bpu10I CCTNAGC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 982
BpuMI CCSGG 2 cut(s) 474, 675
BsaJI CCNNGG 3 cut(s) 216, 653, 674
BsaWI WCCGGW 2 cut(s) 527, 793
BsaXI ACNNNNNCTCC 4 cut(s) 105, 135, 170, 200
Bsc4I CCNNNNNNNGG 3 cut(s) 625, 674, 765
Bse118I RCCGGY 1 cut(s) 527
Bse1I ACTGG 2 cut(s) 1059, 1203
Bse21I CCTNAGG 2 cut(s) 723, 744
Bse3DI GCAATG 3 cut(s) 903, 1038, 1346
BseBI CCWGG 2 cut(s) 638, 655
BseDI CCNNGG 3 cut(s) 216, 653, 674
BseGI GGATG 7 cut(s) 162, 249, 260, 385, 663, 775, 942
BseLI CCNNNNNNNGG 3 cut(s) 625, 674, 765
BseMI GCAATG 3 cut(s) 903, 1038, 1346
BseMII CTCAG 4 cut(s) 122, 636, 714, 758
BseNI ACTGG 2 cut(s) 1059, 1203
BseRI GAGGAG 3 cut(s) 47, 113, 389
BseXI GCAGC 2 cut(s) 370, 438
BseYI CCCAGC 1 cut(s) 326
Bsh1236I CGCG 1 cut(s) 537
BshTI ACCGGT 1 cut(s) 527
BsiSI CCGG 4 cut(s) 474, 528, 674, 794
BslFI GGGAC 2 cut(s) 206, 1165
BslI CCNNNNNNNGG 3 cut(s) 625, 674, 765
BsmFI GGGAC 2 cut(s) 206, 1165
BsmI GAATGC 3 cut(s) 351, 487, 978
Bsp119I TTCGAA 1 cut(s) 982
Bsp1407I TGTACA 1 cut(s) 813
Bsp143I GATC 5 cut(s) 291, 749, 836, 886, 1066
Bsp19I CCATGG 1 cut(s) 216
BspCNI CTCAG 4 cut(s) 121, 637, 715, 757
BspFNI CGCG 1 cut(s) 537
BspLI GGNNCC 4 cut(s) 198, 222, 751, 1181
BspPI GGATC 4 cut(s) 299, 744, 757, 894
BspT104I TTCGAA 1 cut(s) 982
BsrDI GCAATG 3 cut(s) 903, 1038, 1346
BsrFI RCCGGY 1 cut(s) 527
BsrGI TGTACA 1 cut(s) 813
BsrI ACTGG 2 cut(s) 1059, 1203
BssAI RCCGGY 1 cut(s) 527
BssECI CCNNGG 3 cut(s) 216, 653, 674
BssMI GATC 5 cut(s) 291, 749, 836, 886, 1066
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 638, 655
Bst6I CTCTTC 1 cut(s) 374
BstAUI TGTACA 1 cut(s) 813
BstBI TTCGAA 1 cut(s) 982
BstDEI CTNAG 5 cut(s) 108, 645, 723, 744, 1116
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 7 cut(s) 162, 249, 260, 385, 663, 775, 942
BstFNI CGCG 1 cut(s) 537
BstHHI GCGC 1 cut(s) 539
BstKTI GATC 5 cut(s) 294, 752, 839, 889, 1069
BstMBI GATC 5 cut(s) 291, 749, 836, 886, 1066
BstMWI GCNNNNNNNGC 2 cut(s) 474, 545
BstNI CCWGG 2 cut(s) 638, 655
BstSCI CCNGG 4 cut(s) 472, 636, 653, 673
BstSFI CTRYAG 1 cut(s) 1135
BstUI CGCG 1 cut(s) 537
BstV1I GCAGC 2 cut(s) 370, 438
BstV2I GAAGAC 1 cut(s) 1337
BstX2I RGATCY 1 cut(s) 749
BstYI RGATCY 1 cut(s) 749
Bsu36I CCTNAGG 2 cut(s) 723, 744
BtgI CCRYGG 1 cut(s) 216
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 7 cut(s) 162, 249, 260, 385, 663, 775, 942
BtsI GCAGTG 1 cut(s) 709
BtsIMutI CAGTG 2 cut(s) 709, 1210
CfoI GCGC 1 cut(s) 539
Cfr10I RCCGGY 1 cut(s) 527
Cfr13I GGNCC 6 cut(s) 196, 220, 301, 439, 965, 1179
CseI GACGC 2 cut(s) 401, 1178
Csp6I GTAC 3 cut(s) 775, 814, 1058
CspAI ACCGGT 1 cut(s) 527
CspCI CAANNNNNGTGG 2 cut(s) 899, 934
CviAII CATG 4 cut(s) 217, 283, 1006, 1336
CviQI GTAC 3 cut(s) 775, 814, 1058
DdeI CTNAG 5 cut(s) 108, 645, 723, 744, 1116
DpnI GATC 5 cut(s) 293, 751, 838, 888, 1068
DpnII GATC 5 cut(s) 291, 749, 836, 886, 1066
DraIII CACNNNGTG 1 cut(s) 568
Eam1104I CTCTTC 1 cut(s) 374
EarI CTCTTC 1 cut(s) 374
EciI GGCGGA 6 cut(s) 155, 217, 223, 235, 242, 362
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 6 cut(s) 196, 220, 301, 439, 965, 1179
Eco57I CTGAAG 2 cut(s) 1065, 1070
Eco81I CCTNAGG 2 cut(s) 723, 744
EcoO109I RGGNCCY 1 cut(s) 1179
EcoRII CCWGG 2 cut(s) 636, 653
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 2 cut(s) 487, 1011
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 4 cut(s) 220, 286, 1009, 1339
FalI AAGNNNNNCTT 2 cut(s) 1068, 1100
FaqI GGGAC 2 cut(s) 206, 1165
FatI CATG 4 cut(s) 216, 282, 1005, 1335
FauNDI CATATG 2 cut(s) 877, 1156
FblI GTMKAC 1 cut(s) 276
Fnu4HI GCNGC 4 cut(s) 15, 359, 452, 540
FokI GGATG 7 cut(s) 149, 236, 247, 372, 670, 782, 949
Fsp4HI GCNGC 4 cut(s) 15, 359, 452, 540
FspBI CTAG 3 cut(s) 947, 975, 1295
GlaI GCGC 1 cut(s) 538
GluI GCNGC 4 cut(s) 15, 359, 452, 540
GsaI CCCAGC 1 cut(s) 330
GsuI CTGGAG 2 cut(s) 125, 890
HapII CCGG 4 cut(s) 474, 528, 674, 794
HgaI GACGC 2 cut(s) 401, 1178
HhaI GCGC 1 cut(s) 539
Hin1II CATG 4 cut(s) 220, 286, 1009, 1339
Hin6I GCGC 1 cut(s) 537
HinP1I GCGC 1 cut(s) 537
HincII GTYRAC 1 cut(s) 277
HindII GTYRAC 1 cut(s) 277
HinfI GANTC 3 cut(s) 345, 958, 1148
HpaII CCGG 4 cut(s) 474, 528, 674, 794
HphI GGTGA 7 cut(s) 17, 110, 166, 622, 663, 701, 1250
Hpy166II GTNNAC 4 cut(s) 277, 709, 1108, 1241
Hpy188I TCNGA 6 cut(s) 190, 334, 490, 754, 891, 1349
Hpy188III TCNNGA 4 cut(s) 142, 389, 722, 1166
Hpy8I GTNNAC 4 cut(s) 277, 709, 1108, 1241
Hpy99I CGWCG 3 cut(s) 242, 278, 395
HpyAV CCTTC 2 cut(s) 686, 1094
HpyCH4IV ACGT 2 cut(s) 171, 930
HpyCH4V TGCA 7 cut(s) 17, 286, 351, 485, 1009, 1228, 1339
HpyF10VI GCNNNNNNNGC 2 cut(s) 474, 545
HpyF3I CTNAG 5 cut(s) 108, 645, 723, 744, 1116
HpySE526I ACGT 2 cut(s) 171, 930
Hsp92II CATG 4 cut(s) 220, 286, 1009, 1339
HspAI GCGC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 291, 749, 836, 886, 1066
LmnI GCTCC 4 cut(s) 335, 829, 1264, 1309
Lsp1109I GCAGC 2 cut(s) 370, 438
LweI GCATC 8 cut(s) 181, 269, 324, 494, 745, 1090, 1215, 1275
MaeI CTAG 3 cut(s) 947, 975, 1295
MaeII ACGT 2 cut(s) 171, 930
MaeIII GTNAC 6 cut(s) 172, 460, 648, 669, 805, 900
MalI GATC 5 cut(s) 293, 751, 838, 888, 1068
MboI GATC 5 cut(s) 291, 749, 836, 886, 1066
MboII GAAGA 3 cut(s) 361, 1058, 1342
MfeI CAATTG 1 cut(s) 840
MflI RGATCY 1 cut(s) 749
MluCI AATT 5 cut(s) 40, 840, 1184, 1230, 1323
MlyI GAGTC 2 cut(s) 339, 1142
MmeI TCCRAC 2 cut(s) 357, 1286
Mph1103I ATGCAT 2 cut(s) 487, 1011
MseI TTAA 1 cut(s) 1221
MslI CAYNNNNRTG 1 cut(s) 1223
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 4 cut(s) 474, 528, 674, 794
MspR9I CCNGG 4 cut(s) 474, 638, 655, 675
MunI CAATTG 1 cut(s) 840
Mva1269I GAATGC 3 cut(s) 351, 487, 978
MvaI CCWGG 2 cut(s) 638, 655
MvnI CGCG 1 cut(s) 537
MwoI GCNNNNNNNGC 2 cut(s) 474, 545
NciI CCSGG 2 cut(s) 474, 675
NcoI CCATGG 1 cut(s) 216
NdeI CATATG 2 cut(s) 877, 1156
NdeII GATC 5 cut(s) 291, 749, 836, 886, 1066
NlaIII CATG 4 cut(s) 220, 286, 1009, 1339
NlaIV GGNNCC 4 cut(s) 198, 222, 751, 1181
NmeAIII GCCGAG 1 cut(s) 281
NmuCI GTSAC 4 cut(s) 172, 460, 669, 805
NsiI ATGCAT 2 cut(s) 487, 1011
NspV TTCGAA 1 cut(s) 982
PcsI WCGNNNNNNNCGW 1 cut(s) 387
PctI GAATGC 3 cut(s) 351, 487, 978
PfeI GAWTC 1 cut(s) 958
PflMI CCANNNNNTGG 1 cut(s) 765
PinAI ACCGGT 1 cut(s) 527
PkrI GCNGC 4 cut(s) 16, 360, 453, 541
PleI GAGTC 2 cut(s) 339, 1142
PpsI GAGTC 2 cut(s) 339, 1142
PpuMI RGGWCCY 1 cut(s) 1179
Psp5II RGGWCCY 1 cut(s) 1179
Psp6I CCWGG 2 cut(s) 636, 653
PspFI CCCAGC 1 cut(s) 326
PspGI CCWGG 2 cut(s) 636, 653
PspN4I GGNNCC 4 cut(s) 198, 222, 751, 1181
PspPI GGNCC 6 cut(s) 196, 220, 301, 439, 965, 1179
PspPPI RGGWCCY 1 cut(s) 1179
PsuI RGATCY 1 cut(s) 749
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 3 cut(s) 776, 815, 1059
RsaNI GTAC 3 cut(s) 775, 814, 1058
RseI CAYNNNNRTG 1 cut(s) 1223
SalI GTCGAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 1221
SatI GCNGC 4 cut(s) 15, 359, 452, 540
Sau3AI GATC 5 cut(s) 291, 749, 836, 886, 1066
Sau96I GGNCC 6 cut(s) 196, 220, 301, 439, 965, 1179
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 2 cut(s) 339, 1142
ScrFI CCNGG 4 cut(s) 474, 638, 655, 675
SfaNI GCATC 8 cut(s) 181, 269, 324, 494, 745, 1090, 1215, 1275
SfcI CTRYAG 1 cut(s) 1135
SfuI TTCGAA 1 cut(s) 982
SinI GGWCC 6 cut(s) 196, 220, 301, 439, 965, 1179
SmiMI CAYNNNNRTG 1 cut(s) 1223
Sse9I AATT 5 cut(s) 40, 840, 1184, 1230, 1323
SspI AATATT 1 cut(s) 1126
SspMI CTAG 3 cut(s) 947, 975, 1295
StyD4I CCNGG 4 cut(s) 472, 636, 653, 673
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 2 cut(s) 174, 933
TaqI TCGA 4 cut(s) 276, 294, 363, 982
TaqII GACCGA 2 cut(s) 456, 849
TasI AATT 5 cut(s) 40, 840, 1184, 1230, 1323
TatI WGTACW 2 cut(s) 774, 813
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 1 cut(s) 1221
Tru9I TTAA 1 cut(s) 1221
TscAI CASTG 2 cut(s) 716, 1210
TseFI GTSAC 4 cut(s) 172, 460, 669, 805
TseI GCWGC 3 cut(s) 14, 358, 451
Tsp45I GTSAC 4 cut(s) 172, 460, 669, 805
TspDTI ATGAA 2 cut(s) 271, 804
TspGWI ACGGA 1 cut(s) 1189
TspRI CASTG 2 cut(s) 716, 1210
Van91I CCANNNNNTGG 1 cut(s) 765
VpaK11BI GGWCC 6 cut(s) 196, 220, 301, 439, 965, 1179
XapI RAATTY 2 cut(s) 40, 1230
XcmI CCANNNNNNNNNTGG 2 cut(s) 214, 565
XmiI GTMKAC 1 cut(s) 276
XspI CTAG 3 cut(s) 947, 975, 1295
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 2 cut(s) 487, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.