Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0016322

Physical Location & Seq

Genomic Coordinates Reverse (-)

33130420 .. 33130815

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g36012.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGTCTCCCAATTATCAGCGTCTCTCTCACTCCCACGCGTCGCCGCCTCCCCTGCAGCTCGTCTCCATCGACCCTAAAATCTGGCGAGCCTGCGCCGGCAACTTCGTCACCATCCCCACCCTCTATACTAGGGTTTACTACTTCCCTCAAGGCCACCTCGAACACTCCACTAACTCCGCTTCTTCTCTCCCCTCGTGTTCTCTCCAAGCCCCTCATTCTCTGCCGCATCGCCGCCGTCGACTTCCTCGCCGATCCCACCACCAACGAGATCGTCACCAAGGTCCTTCTCCACCCCGTCCATCCTGGACTCTCCTCTCACCACGGCGCTGCCGTTACGGCGGAGGAAAAGAACCTGGAAAGGTCGAGATTAAGATTGACGTTGGCCGACTTGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

132

Amino Acids

14.87

Weight (kDa)

11.08

Isoelectric Point (pI)

75.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016322)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36012
malus_domestica	MD12G1118100.v1.1
rosa_laevigata	RLG00000002728
rosa_multiflora	Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001
rosa_rugosa	Rorug06G0016500
rosa_samantha	Rh6BG397800 Rh6CG403800
rosa_wichuraiana	Rw1G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	238
AccII	CGCG	1 cut(s)	38
AciI	CCGC	5 cut(s)	44, 177, 224, 232, 339
AclWI	GGATC	1 cut(s)	246
AcoI	YGGCCR	1 cut(s)	382
AflIII	ACRYGT	1 cut(s)	36
AjnI	CCWGG	2 cut(s)	302, 352
AluBI	AGCT	1 cut(s)	58
AluI	AGCT	1 cut(s)	58
Alw26I	GTCTC	3 cut(s)	9, 26, 67
AlwI	GGATC	1 cut(s)	246
AoxI	GGCC	2 cut(s)	151, 382
ApeKI	GCWGC	2 cut(s)	55, 327
AspLEI	GCGC	2 cut(s)	95, 327
AspS9I	GGNCC	1 cut(s)	281
AsuHPI	GGTGA	3 cut(s)	100, 266, 309
AvaII	GGWCC	1 cut(s)	281
BauI	CACGAG	1 cut(s)	193
BbvI	GCAGC	2 cut(s)	67, 314
BccI	CCATC	3 cut(s)	74, 119, 307
BceAI	ACGGC	4 cut(s)	219, 315, 338, 352
BciT130I	CCWGG	2 cut(s)	304, 354
BcoDI	GTCTC	3 cut(s)	9, 26, 67
BfaI	CTAG	2 cut(s)	129, 394
BfmI	CTRYAG	1 cut(s)	53
BfoI	RGCGCY	1 cut(s)	328
BglI	GCCNNNNNGGC	2 cut(s)	336, 390
BisI	GCNGC	5 cut(s)	44, 56, 224, 232, 328
BlsI	GCNGC	5 cut(s)	45, 57, 225, 233, 329
Bme1390I	CCNGG	2 cut(s)	304, 354
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	1 cut(s)	281
BmrFI	CCNGG	2 cut(s)	304, 354
BmsI	GCATC	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	277, 320
Bse118I	RCCGGY	1 cut(s)	95
BseBI	CCWGG	2 cut(s)	304, 354
BseDI	CCNNGG	2 cut(s)	277, 320
BseGI	GGATG	2 cut(s)	111, 299
BseRI	GAGGAG	1 cut(s)	302
BseXI	GCAGC	2 cut(s)	67, 314
Bsh1236I	CGCG	1 cut(s)	38
BshFI	GGCC	2 cut(s)	153, 384
BsiSI	CCGG	1 cut(s)	96
BsmAI	GTCTC	3 cut(s)	9, 26, 67
BsmBI	CGTCTC	2 cut(s)	26, 67
BsnI	GGCC	2 cut(s)	153, 384
Bsp143I	GATC	2 cut(s)	251, 268
BspACI	CCGC	5 cut(s)	44, 177, 224, 232, 339
BspANI	GGCC	2 cut(s)	153, 384
BspFNI	CGCG	1 cut(s)	38
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	1 cut(s)	246
BsrFI	RCCGGY	1 cut(s)	95
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	2 cut(s)	277, 320
BssMI	GATC	2 cut(s)	251, 268
BssSI	CACGAG	1 cut(s)	193
BssT1I	CCWWGG	1 cut(s)	277
Bst2BI	CACGAG	1 cut(s)	193
Bst2UI	CCWGG	2 cut(s)	304, 354
BstC8I	GCNNGC	3 cut(s)	87, 91, 97
BstDSI	CCRYGG	1 cut(s)	320
BstF5I	GGATG	2 cut(s)	111, 299
BstFNI	CGCG	1 cut(s)	38
BstH2I	RGCGCY	1 cut(s)	328
BstHHI	GCGC	2 cut(s)	95, 327
BstKTI	GATC	2 cut(s)	254, 271
BstMAI	GTCTC	3 cut(s)	9, 26, 67
BstMBI	GATC	2 cut(s)	251, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	52, 336, 390
BstNI	CCWGG	2 cut(s)	304, 354
BstSCI	CCNGG	2 cut(s)	302, 352
BstSFI	CTRYAG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	38
BstV1I	GCAGC	2 cut(s)	67, 314
BsuRI	GGCC	2 cut(s)	153, 384
BtgI	CCRYGG	1 cut(s)	320
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	111, 299
Cac8I	GCNNGC	3 cut(s)	87, 91, 97
CfoI	GCGC	2 cut(s)	95, 327
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	281
CseI	GACGC	2 cut(s)	8, 27
CviJI	RGCY	6 cut(s)	58, 89, 153, 209, 384, 393
CviKI_1	RGCY	6 cut(s)	58, 89, 153, 209, 384, 393
DpnI	GATC	2 cut(s)	253, 270
DpnII	GATC	2 cut(s)	251, 268
EaeI	YGGCCR	1 cut(s)	382
EciI	GGCGGA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	277
Eco47I	GGWCC	1 cut(s)	281
EcoO109I	RGGNCCY	1 cut(s)	281
EcoRII	CCWGG	2 cut(s)	302, 352
EcoT14I	CCWWGG	1 cut(s)	277
ErhI	CCWWGG	1 cut(s)	277
Esp3I	CGTCTC	2 cut(s)	26, 67
FaiI	YATR	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	238
Fnu4HI	GCNGC	5 cut(s)	44, 56, 224, 232, 328
FokI	GGATG	2 cut(s)	98, 286
Fsp4HI	GCNGC	5 cut(s)	44, 56, 224, 232, 328
FspBI	CTAG	2 cut(s)	129, 394
GlaI	GCGC	2 cut(s)	94, 326
GluI	GCNGC	5 cut(s)	44, 56, 224, 232, 328
HaeII	RGCGCY	1 cut(s)	328
HaeIII	GGCC	2 cut(s)	153, 384
HapII	CCGG	1 cut(s)	96
HgaI	GACGC	2 cut(s)	8, 27
HhaI	GCGC	2 cut(s)	95, 327
Hin6I	GCGC	2 cut(s)	93, 325
HinP1I	GCGC	2 cut(s)	93, 325
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	307
HpaII	CCGG	1 cut(s)	96
HphI	GGTGA	3 cut(s)	100, 266, 309
Hpy166II	GTNNAC	2 cut(s)	136, 239
Hpy188III	TCNNGA	1 cut(s)	364
Hpy8I	GTNNAC	2 cut(s)	136, 239
Hpy99I	CGWCG	2 cut(s)	43, 240
HpyAV	CCTTC	1 cut(s)	294
HpyCH4IV	ACGT	1 cut(s)	378
HpyCH4V	TGCA	1 cut(s)	55
HpyF10VI	GCNNNNNNNGC	3 cut(s)	52, 336, 390
HpySE526I	ACGT	1 cut(s)	378
HspAI	GCGC	2 cut(s)	93, 325
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	2 cut(s)	251, 268
LpnPI	CCDG	8 cut(s)	65, 67, 103, 109, 289, 316, 339, 366
Lsp1109I	GCAGC	2 cut(s)	67, 314
LweI	GCATC	1 cut(s)	235
MaeI	CTAG	2 cut(s)	129, 394
MaeII	ACGT	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	106, 272, 332
MalI	GATC	2 cut(s)	253, 270
MboI	GATC	2 cut(s)	251, 268
MboII	GAAGA	1 cut(s)	174
MluCI	AATT	1 cut(s)	10
MluI	ACGCGT	1 cut(s)	36
MlyI	GAGTC	1 cut(s)	301
MnlI	CCTC	9 cut(s)	57, 131, 156, 167, 202, 222, 255, 323, 335
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	369
MspI	CCGG	1 cut(s)	96
MspR9I	CCNGG	2 cut(s)	304, 354
MvaI	CCWGG	2 cut(s)	304, 354
MvnI	CGCG	1 cut(s)	38
MwoI	GCNNNNNNNGC	3 cut(s)	52, 336, 390
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	2 cut(s)	251, 268
NgoMIV	GCCGGC	1 cut(s)	95
NmuCI	GTSAC	2 cut(s)	106, 272
PcsI	WCGNNNNNNNCGW	3 cut(s)	66, 235, 328
PdiI	GCCGGC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	302
PkrI	GCNGC	5 cut(s)	45, 57, 225, 233, 329
PleI	GAGTC	1 cut(s)	301
PpsI	GAGTC	1 cut(s)	301
PpuMI	RGGWCCY	1 cut(s)	281
Psp5II	RGGWCCY	1 cut(s)	281
Psp6I	CCWGG	2 cut(s)	302, 352
PspGI	CCWGG	2 cut(s)	302, 352
PspPI	GGNCC	1 cut(s)	281
PspPPI	RGGWCCY	1 cut(s)	281
PstI	CTGCAG	1 cut(s)	57
SalI	GTCGAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	5 cut(s)	44, 56, 224, 232, 328
Sau3AI	GATC	2 cut(s)	251, 268
Sau96I	GGNCC	1 cut(s)	281
SchI	GAGTC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	304, 354
SetI	ASST	6 cut(s)	60, 159, 283, 355, 363, 381
SfaNI	GCATC	1 cut(s)	235
SfcI	CTRYAG	1 cut(s)	53
SinI	GGWCC	1 cut(s)	281
SmlI	CTYRAG	1 cut(s)	147
SmoI	CTYRAG	1 cut(s)	147
Sse9I	AATT	1 cut(s)	10
SsiI	CCGC	5 cut(s)	44, 177, 224, 232, 339
SspMI	CTAG	2 cut(s)	129, 394
StyD4I	CCNGG	2 cut(s)	302, 352
StyI	CCWWGG	1 cut(s)	277
TaiI	ACGT	1 cut(s)	381
TaqI	TCGA	4 cut(s)	69, 159, 238, 363
TasI	AATT	1 cut(s)	10
TauI	GCSGC	3 cut(s)	46, 226, 234
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseFI	GTSAC	2 cut(s)	106, 272
TseI	GCWGC	2 cut(s)	55, 327
Tsp45I	GTSAC	2 cut(s)	106, 272
VpaK11BI	GGWCC	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	238
XspI	CTAG	2 cut(s)	129, 394

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.