Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g36012 |
| malus_domestica | MD12G1118100.v1.1 |
| rosa_laevigata | RLG00000002728 |
| rosa_multiflora | Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001 |
| rosa_rugosa | Rorug06G0016500 |
| rosa_samantha | Rh6BG397800 Rh6CG403800 |
| rosa_wichuraiana | Rw1G013540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 282 |
| AclWI | GGATC | 4 cut(s) | 20, 33, 202, 330 |
| AgsI | TTSAA | 1 cut(s) | 352 |
| AjiI | CACGTC | 2 cut(s) | 112, 183 |
| AluBI | AGCT | 2 cut(s) | 21, 267 |
| AluI | AGCT | 2 cut(s) | 21, 267 |
| Alw21I | GWGCWC | 1 cut(s) | 120 |
| AlwI | GGATC | 4 cut(s) | 20, 33, 202, 330 |
| AoxI | GGCC | 1 cut(s) | 106 |
| AspLEI | GCGC | 1 cut(s) | 50 |
| AspS9I | GGNCC | 3 cut(s) | 61, 246, 279 |
| AsuHPI | GGTGA | 1 cut(s) | 222 |
| AvaII | GGWCC | 3 cut(s) | 61, 246, 279 |
| BamHI | GGATCC | 1 cut(s) | 25 |
| BbsI | GAAGAC | 2 cut(s) | 82, 219 |
| Bbv12I | GWGCWC | 1 cut(s) | 120 |
| BfmI | CTRYAG | 1 cut(s) | 255 |
| Bme18I | GGWCC | 3 cut(s) | 61, 246, 279 |
| BmgBI | CACGTC | 2 cut(s) | 112, 183 |
| BmgT120I | GGNCC | 3 cut(s) | 61, 246, 279 |
| BmiI | GGNNCC | 2 cut(s) | 27, 248 |
| BmsI | GCATC | 1 cut(s) | 293 |
| BpiI | GAAGAC | 2 cut(s) | 82, 219 |
| Bpu10I | CCTNAGC | 1 cut(s) | 275 |
| BpuEI | CTTGAG | 1 cut(s) | 87 |
| BsaBI | GATNNNNATC | 1 cut(s) | 30 |
| Bse118I | RCCGGY | 1 cut(s) | 50 |
| Bse1I | ACTGG | 1 cut(s) | 248 |
| Bse3DI | GCAATG | 1 cut(s) | 267 |
| Bse8I | GATNNNNATC | 1 cut(s) | 30 |
| BseJI | GATNNNNATC | 1 cut(s) | 30 |
| BseMI | GCAATG | 1 cut(s) | 267 |
| BseMII | CTCAG | 1 cut(s) | 289 |
| BseNI | ACTGG | 1 cut(s) | 248 |
| BshFI | GGCC | 1 cut(s) | 108 |
| BsiHKAI | GWGCWC | 1 cut(s) | 120 |
| BsiSI | CCGG | 1 cut(s) | 51 |
| BslFI | GGGAC | 1 cut(s) | 232 |
| BsmFI | GGGAC | 1 cut(s) | 232 |
| BsnI | GGCC | 1 cut(s) | 108 |
| Bsp1286I | GDGCHC | 1 cut(s) | 120 |
| Bsp143I | GATC | 3 cut(s) | 25, 207, 322 |
| BspACI | CCGC | 1 cut(s) | 282 |
| BspANI | GGCC | 1 cut(s) | 108 |
| BspCNI | CTCAG | 1 cut(s) | 288 |
| BspLI | GGNNCC | 2 cut(s) | 27, 248 |
| BspPI | GGATC | 4 cut(s) | 20, 33, 202, 330 |
| BsrDI | GCAATG | 1 cut(s) | 267 |
| BsrFI | RCCGGY | 1 cut(s) | 50 |
| BsrI | ACTGG | 1 cut(s) | 248 |
| BssAI | RCCGGY | 1 cut(s) | 50 |
| BssMI | GATC | 3 cut(s) | 25, 207, 322 |
| BstC8I | GCNNGC | 4 cut(s) | 42, 46, 52, 120 |
| BstDEI | CTNAG | 1 cut(s) | 275 |
| BstHHI | GCGC | 1 cut(s) | 50 |
| BstKTI | GATC | 3 cut(s) | 28, 210, 325 |
| BstMBI | GATC | 3 cut(s) | 25, 207, 322 |
| BstSFI | CTRYAG | 1 cut(s) | 255 |
| BstV2I | GAAGAC | 2 cut(s) | 82, 219 |
| BstX2I | RGATCY | 1 cut(s) | 25 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 187 |
| BstYI | RGATCY | 1 cut(s) | 25 |
| BsuRI | GGCC | 1 cut(s) | 108 |
| BtrI | CACGTC | 2 cut(s) | 112, 183 |
| Cac8I | GCNNGC | 4 cut(s) | 42, 46, 52, 120 |
| CfoI | GCGC | 1 cut(s) | 50 |
| Cfr10I | RCCGGY | 1 cut(s) | 50 |
| Cfr13I | GGNCC | 3 cut(s) | 61, 246, 279 |
| CviAII | CATG | 3 cut(s) | 10, 58, 201 |
| CviJI | RGCY | 4 cut(s) | 21, 108, 267, 290 |
| CviKI_1 | RGCY | 4 cut(s) | 21, 108, 267, 290 |
| DdeI | CTNAG | 1 cut(s) | 275 |
| DpnI | GATC | 3 cut(s) | 27, 209, 324 |
| DpnII | GATC | 3 cut(s) | 25, 207, 322 |
| Eco47I | GGWCC | 3 cut(s) | 61, 246, 279 |
| FaeI | CATG | 3 cut(s) | 13, 61, 204 |
| FaiI | YATR | 6 cut(s) | 11, 37, 59, 202, 257, 337 |
| FaqI | GGGAC | 1 cut(s) | 232 |
| FatI | CATG | 3 cut(s) | 9, 57, 200 |
| GlaI | GCGC | 1 cut(s) | 49 |
| HaeIII | GGCC | 1 cut(s) | 108 |
| HapII | CCGG | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 50 |
| Hin1II | CATG | 3 cut(s) | 13, 61, 204 |
| Hin6I | GCGC | 1 cut(s) | 48 |
| HinP1I | GCGC | 1 cut(s) | 48 |
| HindIII | AAGCTT | 1 cut(s) | 19 |
| HinfI | GANTC | 3 cut(s) | 159, 191, 236 |
| HpaII | CCGG | 1 cut(s) | 51 |
| HphI | GGTGA | 1 cut(s) | 222 |
| Hpy188I | TCNGA | 5 cut(s) | 75, 158, 196, 241, 322 |
| Hpy188III | TCNNGA | 2 cut(s) | 211, 277 |
| Hpy99I | CGWCG | 3 cut(s) | 116, 187, 223 |
| HpyAV | CCTTC | 1 cut(s) | 260 |
| HpyCH4IV | ACGT | 2 cut(s) | 111, 182 |
| HpyF3I | CTNAG | 1 cut(s) | 275 |
| HpySE526I | ACGT | 2 cut(s) | 111, 182 |
| Hsp92II | CATG | 3 cut(s) | 13, 61, 204 |
| HspAI | GCGC | 1 cut(s) | 48 |
| KroI | GCCGGC | 1 cut(s) | 50 |
| KroNI | GCCGGC | 1 cut(s) | 52 |
| Kzo9I | GATC | 3 cut(s) | 25, 207, 322 |
| LpnPI | CCDG | 6 cut(s) | 64, 173, 224, 229, 246, 262 |
| LweI | GCATC | 1 cut(s) | 293 |
| MaeII | ACGT | 2 cut(s) | 111, 182 |
| MalI | GATC | 3 cut(s) | 27, 209, 324 |
| MboI | GATC | 3 cut(s) | 25, 207, 322 |
| MboII | GAAGA | 2 cut(s) | 82, 219 |
| MflI | RGATCY | 1 cut(s) | 25 |
| MhlI | GDGCHC | 1 cut(s) | 120 |
| MluCI | AATT | 2 cut(s) | 296, 347 |
| MmeI | TCCRAC | 1 cut(s) | 264 |
| MnlI | CCTC | 6 cut(s) | 39, 81, 111, 152, 160, 216 |
| MreI | CGCCGGCG | 1 cut(s) | 50 |
| MroNI | GCCGGC | 1 cut(s) | 50 |
| MspI | CCGG | 1 cut(s) | 51 |
| NaeI | GCCGGC | 1 cut(s) | 52 |
| NdeII | GATC | 3 cut(s) | 25, 207, 322 |
| NgoMIV | GCCGGC | 1 cut(s) | 50 |
| NlaIII | CATG | 3 cut(s) | 13, 61, 204 |
| NlaIV | GGNNCC | 2 cut(s) | 27, 248 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 150 |
| PdiI | GCCGGC | 1 cut(s) | 52 |
| PfeI | GAWTC | 3 cut(s) | 159, 191, 236 |
| PflFI | GACNNNGTC | 2 cut(s) | 59, 223 |
| PspN4I | GGNNCC | 2 cut(s) | 27, 248 |
| PspPI | GGNCC | 3 cut(s) | 61, 246, 279 |
| PsuI | RGATCY | 1 cut(s) | 25 |
| PsyI | GACNNNGTC | 2 cut(s) | 59, 223 |
| Sau3AI | GATC | 3 cut(s) | 25, 207, 322 |
| Sau96I | GGNCC | 3 cut(s) | 61, 246, 279 |
| SduI | GDGCHC | 1 cut(s) | 120 |
| SetI | ASST | 5 cut(s) | 23, 114, 185, 227, 269 |
| SfaNI | GCATC | 1 cut(s) | 293 |
| SfcI | CTRYAG | 1 cut(s) | 255 |
| SgrAI | CRCCGGYG | 1 cut(s) | 50 |
| SinI | GGWCC | 3 cut(s) | 61, 246, 279 |
| SmlI | CTYRAG | 1 cut(s) | 102 |
| SmoI | CTYRAG | 1 cut(s) | 102 |
| Sse9I | AATT | 2 cut(s) | 296, 347 |
| SsiI | CCGC | 1 cut(s) | 282 |
| TaiI | ACGT | 2 cut(s) | 114, 185 |
| TaqI | TCGA | 2 cut(s) | 114, 206 |
| TasI | AATT | 2 cut(s) | 296, 347 |
| TfiI | GAWTC | 3 cut(s) | 159, 191, 236 |
| TspDTI | ATGAA | 3 cut(s) | 17, 92, 372 |
| TspGWI | ACGGA | 1 cut(s) | 142 |
| Tth111I | GACNNNGTC | 2 cut(s) | 59, 223 |
| VpaK11BI | GGWCC | 3 cut(s) | 61, 246, 279 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 240 |