Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002989.1

Orthogroup ID

OG0016322

Physical Location & Seq

Genomic Coordinates Reverse (-)

27174 .. 27476

Gene Structure 303 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002989.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

atggtccaaatgcctccggtgaactccaaagtcttctactttcctcatggccacgccaagcacgcccaaacccatgtcgatttccccgcctcctctgtcagaatcccacctctcattctctgttgcgctgccggaatcagatacatggctgaccccgaaaccaacgaggtcttcgccagaatccggctggccccttccgagaccaatgagctttctgctcaggaccgcatcgactgtcaaatcatcaacaccatgaacaaaattggattaacaccaaatatcttgggcgaaattgaaaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_resp B3

Protein Analysis

100

Amino Acids

11.13

Weight (kDa)

6.39

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016322)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36012
malus_domestica	MD12G1118100.v1.1
rosa_laevigata	RLG00000002728
rosa_multiflora	Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001
rosa_rugosa	Rorug06G0016500
rosa_samantha	Rh6BG397800 Rh6CG403800
rosa_wichuraiana	Rw1G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 226
AcoI	YGGCCR	1 cut(s)	49
AfiI	CCNNNNNNNGG	1 cut(s)	183
AgsI	TTSAA	1 cut(s)	296
AjuI	GAANNNNNNNTTGG	2 cut(s)	155, 187
AluBI	AGCT	1 cut(s)	211
AluI	AGCT	1 cut(s)	211
Alw26I	GTCTC	1 cut(s)	194
AoxI	GGCC	2 cut(s)	49, 189
ApeKI	GCWGC	1 cut(s)	128
AspLEI	GCGC	1 cut(s)	128
AspS9I	GGNCC	3 cut(s)	4, 190, 223
AsuHPI	GGTGA	1 cut(s)	31
AvaII	GGWCC	2 cut(s)	4, 223
BalI	TGGCCA	1 cut(s)	51
BbsI	GAAGAC	2 cut(s)	25, 163
BbvI	GCAGC	1 cut(s)	115
BcoDI	GTCTC	1 cut(s)	194
BisI	GCNGC	1 cut(s)	129
BlsI	GCNGC	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	4, 223
BmgT120I	GGNCC	3 cut(s)	4, 190, 223
BmiI	GGNNCC	1 cut(s)	192
BmsI	GCATC	1 cut(s)	237
BpiI	GAAGAC	2 cut(s)	25, 163
Bpu10I	CCTNAGC	1 cut(s)	219
BsaI	GGTCTC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	16
Bsc4I	CCNNNNNNNGG	1 cut(s)	183
BseLI	CCNNNNNNNGG	1 cut(s)	183
BseMII	CTCAG	1 cut(s)	233
BseRI	GAGGAG	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	115
BshFI	GGCC	2 cut(s)	51, 191
BsiSI	CCGG	3 cut(s)	17, 132, 184
BslI	CCNNNNNNNGG	1 cut(s)	183
BsmAI	GTCTC	1 cut(s)	194
BsnI	GGCC	2 cut(s)	51, 191
Bso31I	GGTCTC	1 cut(s)	194
BspACI	CCGC	2 cut(s)	87, 226
BspANI	GGCC	2 cut(s)	51, 191
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	192
BspTNI	GGTCTC	1 cut(s)	194
Bst4CI	ACNGT	1 cut(s)	236
BstC8I	GCNNGC	2 cut(s)	63, 189
BstDEI	CTNAG	1 cut(s)	219
BstHHI	GCGC	1 cut(s)	128
BstMAI	GTCTC	1 cut(s)	194
BstMWI	GCNNNNNNNGC	1 cut(s)	62
BstV1I	GCAGC	1 cut(s)	115
BstV2I	GAAGAC	2 cut(s)	25, 163
BsuRI	GGCC	2 cut(s)	51, 191
Cac8I	GCNNGC	2 cut(s)	63, 189
CfoI	GCGC	1 cut(s)	128
Cfr13I	GGNCC	3 cut(s)	4, 190, 223
CviAII	CATG	4 cut(s)	47, 74, 145, 253
CviJI	RGCY	5 cut(s)	51, 149, 187, 191, 211
CviKI_1	RGCY	5 cut(s)	51, 149, 187, 191, 211
DdeI	CTNAG	1 cut(s)	219
EaeI	YGGCCR	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	4, 223
FaeI	CATG	4 cut(s)	50, 77, 148, 256
FaiI	YATR	4 cut(s)	48, 75, 146, 254
FatI	CATG	4 cut(s)	46, 73, 144, 252
FauI	CCCGC	1 cut(s)	94
Fnu4HI	GCNGC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	129
GlaI	GCGC	1 cut(s)	127
GluI	GCNGC	1 cut(s)	129
HaeIII	GGCC	2 cut(s)	51, 191
HapII	CCGG	3 cut(s)	17, 132, 184
HhaI	GCGC	1 cut(s)	128
Hin1II	CATG	4 cut(s)	50, 77, 148, 256
Hin6I	GCGC	1 cut(s)	126
HinP1I	GCGC	1 cut(s)	126
HinfI	GANTC	3 cut(s)	102, 135, 180
HpaII	CCGG	3 cut(s)	17, 132, 184
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	1 cut(s)	22
Hpy188I	TCNGA	3 cut(s)	101, 140, 199
Hpy188III	TCNNGA	1 cut(s)	221
Hpy8I	GTNNAC	1 cut(s)	22
HpyAV	CCTTC	1 cut(s)	204
HpyCH4III	ACNGT	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	62
HpyF3I	CTNAG	1 cut(s)	219
Hsp92II	CATG	4 cut(s)	50, 77, 148, 256
HspAI	GCGC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	30, 145, 173, 190, 197, 206
Lsp1109I	GCAGC	1 cut(s)	115
LweI	GCATC	1 cut(s)	237
MboII	GAAGA	2 cut(s)	25, 163
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	2 cut(s)	261, 291
MluNI	TGGCCA	1 cut(s)	51
MnlI	CCTC	6 cut(s)	24, 54, 100, 103, 120, 160
Mox20I	TGGCCA	1 cut(s)	51
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	1 cut(s)	269
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	3 cut(s)	17, 132, 184
MwoI	GCNNNNNNNGC	1 cut(s)	62
NlaIII	CATG	4 cut(s)	50, 77, 148, 256
NlaIV	GGNNCC	1 cut(s)	192
PfeI	GAWTC	3 cut(s)	102, 135, 180
PkrI	GCNGC	1 cut(s)	130
PspN4I	GGNNCC	1 cut(s)	192
PspPI	GGNCC	3 cut(s)	4, 190, 223
SaqAI	TTAA	1 cut(s)	269
SatI	GCNGC	1 cut(s)	129
Sau96I	GGNCC	3 cut(s)	4, 190, 223
SetI	ASST	3 cut(s)	112, 171, 213
SfaNI	GCATC	1 cut(s)	237
SinI	GGWCC	2 cut(s)	4, 223
Sse9I	AATT	2 cut(s)	261, 291
SsiI	CCGC	2 cut(s)	87, 226
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	2 cut(s)	78, 231
TasI	AATT	2 cut(s)	261, 291
TfiI	GAWTC	3 cut(s)	102, 135, 180
Tru1I	TTAA	1 cut(s)	269
Tru9I	TTAA	1 cut(s)	269
TseI	GCWGC	1 cut(s)	128
TspDTI	ATGAA	1 cut(s)	269
VpaK11BI	GGWCC	2 cut(s)	4, 223
XcmI	CCANNNNNNNNNTGG	1 cut(s)	184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.