Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g36012 |
| malus_domestica | MD12G1118100.v1.1 |
| rosa_laevigata | RLG00000002728 |
| rosa_multiflora | Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001 |
| rosa_rugosa | Rorug06G0016500 |
| rosa_samantha | Rh6BG397800 Rh6CG403800 |
| rosa_wichuraiana | Rw1G013540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 141 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 174 |
| AjiI | CACGTC | 1 cut(s) | 118 |
| Alw21I | GWGCWC | 1 cut(s) | 54 |
| AoxI | GGCC | 1 cut(s) | 40 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 123, 155 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| BbsI | GAAGAC | 2 cut(s) | 16, 154 |
| Bbv12I | GWGCWC | 1 cut(s) | 54 |
| BmgBI | CACGTC | 1 cut(s) | 118 |
| BpiI | GAAGAC | 2 cut(s) | 16, 154 |
| BpuEI | CTTGAG | 1 cut(s) | 21 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BseRI | GAGGAG | 1 cut(s) | 70 |
| BshFI | GGCC | 1 cut(s) | 42 |
| BsiHKAI | GWGCWC | 1 cut(s) | 54 |
| BsiSI | CCGG | 1 cut(s) | 175 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 174 |
| BsnI | GGCC | 1 cut(s) | 42 |
| Bsp1286I | GDGCHC | 1 cut(s) | 54 |
| BspANI | GGCC | 1 cut(s) | 42 |
| BstC8I | GCNNGC | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 53 |
| BstV2I | GAAGAC | 2 cut(s) | 16, 154 |
| BsuRI | GGCC | 1 cut(s) | 42 |
| BtrI | CACGTC | 1 cut(s) | 118 |
| Cac8I | GCNNGC | 1 cut(s) | 54 |
| CseI | GACGC | 1 cut(s) | 76 |
| CviAII | CATG | 2 cut(s) | 65, 136 |
| CviJI | RGCY | 2 cut(s) | 42, 178 |
| CviKI_1 | RGCY | 2 cut(s) | 42, 178 |
| FaeI | CATG | 2 cut(s) | 68, 139 |
| FaiI | YATR | 2 cut(s) | 66, 137 |
| FatI | CATG | 2 cut(s) | 64, 135 |
| FblI | GTMKAC | 1 cut(s) | 141 |
| HaeIII | GGCC | 1 cut(s) | 42 |
| HapII | CCGG | 1 cut(s) | 175 |
| HgaI | GACGC | 1 cut(s) | 76 |
| Hin1II | CATG | 2 cut(s) | 68, 139 |
| HincII | GTYRAC | 1 cut(s) | 142 |
| HindII | GTYRAC | 1 cut(s) | 142 |
| HinfI | GANTC | 2 cut(s) | 93, 171 |
| HpaII | CCGG | 1 cut(s) | 175 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 142 |
| Hpy188I | TCNGA | 2 cut(s) | 9, 92 |
| Hpy8I | GTNNAC | 1 cut(s) | 142 |
| Hpy99I | CGWCG | 2 cut(s) | 122, 158 |
| HpyCH4IV | ACGT | 1 cut(s) | 117 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 53 |
| HpySE526I | ACGT | 1 cut(s) | 117 |
| Hsp92II | CATG | 2 cut(s) | 68, 139 |
| LpnPI | CCDG | 1 cut(s) | 97 |
| MaeII | ACGT | 1 cut(s) | 117 |
| MboII | GAAGA | 2 cut(s) | 16, 154 |
| MhlI | GDGCHC | 1 cut(s) | 54 |
| MnlI | CCTC | 6 cut(s) | 15, 45, 86, 91, 111, 151 |
| MspI | CCGG | 1 cut(s) | 175 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 53 |
| NlaIII | CATG | 2 cut(s) | 68, 139 |
| NmeAIII | GCCGAG | 1 cut(s) | 73 |
| PfeI | GAWTC | 2 cut(s) | 93, 171 |
| PflFI | GACNNNGTC | 1 cut(s) | 158 |
| PsyI | GACNNNGTC | 1 cut(s) | 158 |
| SalI | GTCGAC | 1 cut(s) | 140 |
| SduI | GDGCHC | 1 cut(s) | 54 |
| SetI | ASST | 3 cut(s) | 103, 120, 162 |
| SgeI | CNNG | 9 cut(s) | 50, 56, 61, 65, 77, 96, 128, 148, 169 |
| SmlI | CTYRAG | 1 cut(s) | 36 |
| SmoI | CTYRAG | 1 cut(s) | 36 |
| TaiI | ACGT | 1 cut(s) | 120 |
| TaqI | TCGA | 1 cut(s) | 141 |
| TfiI | GAWTC | 2 cut(s) | 93, 171 |
| TspDTI | ATGAA | 1 cut(s) | 26 |
| Tth111I | GACNNNGTC | 1 cut(s) | 158 |
| XmiI | GTMKAC | 1 cut(s) | 141 |