Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs)
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g36012 |
| malus_domestica | MD12G1118100.v1.1 |
| rosa_laevigata | RLG00000002728 |
| rosa_multiflora | Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001 |
| rosa_rugosa | Rorug06G0016500 |
| rosa_samantha | Rh6BG397800 Rh6CG403800 |
| rosa_wichuraiana | Rw1G013540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 87, 226 |
| AcsI | RAATTY | 2 cut(s) | 355, 389 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 183, 345 |
| AgsI | TTSAA | 2 cut(s) | 355, 464 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 155, 187 |
| AoxI | GGCC | 3 cut(s) | 49, 63, 330 |
| ApeKI | GCWGC | 2 cut(s) | 123, 447 |
| ApoI | RAATTY | 2 cut(s) | 355, 389 |
| AspS9I | GGNCC | 3 cut(s) | 4, 64, 223 |
| AsuHPI | GGTGA | 4 cut(s) | 31, 299, 397, 413 |
| AsuNHI | GCTAGC | 1 cut(s) | 187 |
| AvaII | GGWCC | 2 cut(s) | 4, 223 |
| BbsI | GAAGAC | 2 cut(s) | 25, 163 |
| BbvI | GCAGC | 2 cut(s) | 110, 434 |
| BfaI | CTAG | 1 cut(s) | 188 |
| BfmI | CTRYAG | 1 cut(s) | 448 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 62 |
| BisI | GCNGC | 2 cut(s) | 124, 448 |
| BlsI | GCNGC | 2 cut(s) | 125, 449 |
| Bme18I | GGWCC | 2 cut(s) | 4, 223 |
| BmgT120I | GGNCC | 3 cut(s) | 4, 64, 223 |
| BmsI | GCATC | 1 cut(s) | 237 |
| BmtI | GCTAGC | 1 cut(s) | 191 |
| BpiI | GAAGAC | 2 cut(s) | 25, 163 |
| Bpu10I | CCTNAGC | 1 cut(s) | 219 |
| BpuEI | CTTGAG | 2 cut(s) | 30, 311 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 426 |
| BsaWI | WCCGGW | 1 cut(s) | 16 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 183, 345 |
| BseDI | CCNNGG | 2 cut(s) | 162, 426 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 183, 345 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 1 cut(s) | 82 |
| BseXI | GCAGC | 2 cut(s) | 110, 434 |
| BshFI | GGCC | 3 cut(s) | 51, 65, 332 |
| BsiSI | CCGG | 2 cut(s) | 17, 184 |
| BslFI | GGGAC | 1 cut(s) | 362 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 183, 345 |
| BsmFI | GGGAC | 1 cut(s) | 362 |
| BsnI | GGCC | 3 cut(s) | 51, 65, 332 |
| Bsp19I | CCATGG | 1 cut(s) | 426 |
| BspACI | CCGC | 2 cut(s) | 87, 226 |
| BspANI | GGCC | 3 cut(s) | 51, 65, 332 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspMAI | CTGCAG | 1 cut(s) | 452 |
| BspOI | GCTAGC | 1 cut(s) | 191 |
| BssECI | CCNNGG | 2 cut(s) | 162, 426 |
| BssT1I | CCWWGG | 2 cut(s) | 162, 426 |
| Bst4CI | ACNGT | 1 cut(s) | 236 |
| BstC8I | GCNNGC | 2 cut(s) | 63, 189 |
| BstDEI | CTNAG | 1 cut(s) | 219 |
| BstDSI | CCRYGG | 1 cut(s) | 426 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 62 |
| BstSFI | CTRYAG | 1 cut(s) | 448 |
| BstV1I | GCAGC | 2 cut(s) | 110, 434 |
| BstV2I | GAAGAC | 2 cut(s) | 25, 163 |
| BsuRI | GGCC | 3 cut(s) | 51, 65, 332 |
| BtgI | CCRYGG | 1 cut(s) | 426 |
| BtsI | GCAGTG | 1 cut(s) | 457 |
| BtsIMutI | CAGTG | 1 cut(s) | 457 |
| Cac8I | GCNNGC | 2 cut(s) | 63, 189 |
| Cfr13I | GGNCC | 3 cut(s) | 4, 64, 223 |
| CviAII | CATG | 5 cut(s) | 74, 145, 374, 413, 427 |
| CviJI | RGCY | 7 cut(s) | 51, 65, 149, 187, 191, 211, 332 |
| CviKI_1 | RGCY | 7 cut(s) | 51, 65, 149, 187, 191, 211, 332 |
| DdeI | CTNAG | 1 cut(s) | 219 |
| Eco130I | CCWWGG | 2 cut(s) | 162, 426 |
| Eco147I | AGGCCT | 1 cut(s) | 332 |
| Eco47I | GGWCC | 2 cut(s) | 4, 223 |
| EcoT14I | CCWWGG | 2 cut(s) | 162, 426 |
| ErhI | CCWWGG | 2 cut(s) | 162, 426 |
| FaeI | CATG | 5 cut(s) | 77, 148, 377, 416, 430 |
| FaiI | YATR | 8 cut(s) | 75, 146, 336, 375, 414, 428, 435, 437 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 155, 187 |
| FaqI | GGGAC | 1 cut(s) | 362 |
| FatI | CATG | 5 cut(s) | 73, 144, 373, 412, 426 |
| FauI | CCCGC | 1 cut(s) | 94 |
| FauNDI | CATATG | 1 cut(s) | 435 |
| Fnu4HI | GCNGC | 2 cut(s) | 124, 448 |
| Fsp4HI | GCNGC | 2 cut(s) | 124, 448 |
| FspBI | CTAG | 1 cut(s) | 188 |
| GluI | GCNGC | 2 cut(s) | 124, 448 |
| HaeIII | GGCC | 3 cut(s) | 51, 65, 332 |
| HapII | CCGG | 2 cut(s) | 17, 184 |
| Hin1II | CATG | 5 cut(s) | 77, 148, 377, 416, 430 |
| HinfI | GANTC | 3 cut(s) | 102, 135, 180 |
| HpaII | CCGG | 2 cut(s) | 17, 184 |
| HphI | GGTGA | 4 cut(s) | 31, 299, 397, 413 |
| Hpy166II | GTNNAC | 1 cut(s) | 22 |
| Hpy188I | TCNGA | 3 cut(s) | 101, 140, 420 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy8I | GTNNAC | 1 cut(s) | 22 |
| Hpy99I | CGWCG | 1 cut(s) | 347 |
| HpyAV | CCTTC | 1 cut(s) | 204 |
| HpyCH4III | ACNGT | 1 cut(s) | 236 |
| HpyCH4IV | ACGT | 1 cut(s) | 342 |
| HpyCH4V | TGCA | 3 cut(s) | 131, 309, 450 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 62 |
| HpyF3I | CTNAG | 1 cut(s) | 219 |
| HpySE526I | ACGT | 1 cut(s) | 342 |
| Hsp92II | CATG | 5 cut(s) | 77, 148, 377, 416, 430 |
| LpnPI | CCDG | 6 cut(s) | 30, 47, 117, 190, 197, 206 |
| Lsp1109I | GCAGC | 2 cut(s) | 110, 434 |
| LweI | GCATC | 1 cut(s) | 237 |
| MaeI | CTAG | 1 cut(s) | 188 |
| MaeII | ACGT | 1 cut(s) | 342 |
| MboII | GAAGA | 2 cut(s) | 25, 163 |
| MluCI | AATT | 3 cut(s) | 261, 355, 389 |
| MnlI | CCTC | 7 cut(s) | 24, 54, 100, 103, 120, 160, 449 |
| MseI | TTAA | 1 cut(s) | 269 |
| MspI | CCGG | 2 cut(s) | 17, 184 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 62 |
| NcoI | CCATGG | 1 cut(s) | 426 |
| NdeI | CATATG | 1 cut(s) | 435 |
| NheI | GCTAGC | 1 cut(s) | 187 |
| NlaIII | CATG | 5 cut(s) | 77, 148, 377, 416, 430 |
| PceI | AGGCCT | 1 cut(s) | 332 |
| PfeI | GAWTC | 3 cut(s) | 102, 135, 180 |
| PkrI | GCNGC | 2 cut(s) | 125, 449 |
| PspPI | GGNCC | 3 cut(s) | 4, 64, 223 |
| PstI | CTGCAG | 1 cut(s) | 452 |
| SaqAI | TTAA | 1 cut(s) | 269 |
| SatI | GCNGC | 2 cut(s) | 124, 448 |
| Sau96I | GGNCC | 3 cut(s) | 4, 64, 223 |
| SetI | ASST | 4 cut(s) | 112, 171, 314, 345 |
| SfaNI | GCATC | 1 cut(s) | 237 |
| SfcI | CTRYAG | 1 cut(s) | 448 |
| SinI | GGWCC | 2 cut(s) | 4, 223 |
| SmlI | CTYRAG | 2 cut(s) | 45, 326 |
| SmoI | CTYRAG | 2 cut(s) | 45, 326 |
| Sse9I | AATT | 3 cut(s) | 261, 355, 389 |
| SseBI | AGGCCT | 1 cut(s) | 332 |
| SsiI | CCGC | 2 cut(s) | 87, 226 |
| SspMI | CTAG | 1 cut(s) | 188 |
| StuI | AGGCCT | 1 cut(s) | 332 |
| StyI | CCWWGG | 2 cut(s) | 162, 426 |
| TaaI | ACNGT | 1 cut(s) | 236 |
| TaiI | ACGT | 1 cut(s) | 345 |
| TaqI | TCGA | 1 cut(s) | 231 |
| TasI | AATT | 3 cut(s) | 261, 355, 389 |
| TfiI | GAWTC | 3 cut(s) | 102, 135, 180 |
| Tru1I | TTAA | 1 cut(s) | 269 |
| Tru9I | TTAA | 1 cut(s) | 269 |
| TscAI | CASTG | 1 cut(s) | 457 |
| TseI | GCWGC | 2 cut(s) | 123, 447 |
| TspDTI | ATGAA | 2 cut(s) | 362, 422 |
| TspGWI | ACGGA | 1 cut(s) | 85 |
| TspRI | CASTG | 1 cut(s) | 457 |
| VpaK11BI | GGWCC | 2 cut(s) | 4, 223 |
| XapI | RAATTY | 2 cut(s) | 355, 389 |
| XspI | CTAG | 1 cut(s) | 188 |