Pentatricopeptide repeat-containing protein
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_4g36012 |
| malus_domestica | MD12G1118100.v1.1 |
| rosa_laevigata | RLG00000002728 |
| rosa_multiflora | Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001 |
| rosa_rugosa | Rorug06G0016500 |
| rosa_samantha | Rh6BG397800 Rh6CG403800 |
| rosa_wichuraiana | Rw1G013540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 96 |
| AccI | GTMKAC | 1 cut(s) | 415 |
| AciI | CCGC | 1 cut(s) | 183 |
| AcsI | RAATTY | 1 cut(s) | 402 |
| AcyI | GRCGYC | 1 cut(s) | 93 |
| AfaI | GTAC | 1 cut(s) | 463 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 282 |
| AgsI | TTSAA | 4 cut(s) | 22, 271, 386, 407 |
| AjnI | CCWGG | 1 cut(s) | 436 |
| AluBI | AGCT | 3 cut(s) | 66, 106, 320 |
| AluI | AGCT | 3 cut(s) | 66, 106, 320 |
| Alw21I | GWGCWC | 1 cut(s) | 165 |
| AoxI | GGCC | 3 cut(s) | 139, 174, 198 |
| ApeKI | GCWGC | 1 cut(s) | 66 |
| ApoI | RAATTY | 1 cut(s) | 402 |
| AspLEI | GCGC | 1 cut(s) | 212 |
| AspS9I | GGNCC | 1 cut(s) | 139 |
| AsuHPI | GGTGA | 1 cut(s) | 157 |
| Bbv12I | GWGCWC | 1 cut(s) | 165 |
| BbvI | GCAGC | 1 cut(s) | 53 |
| BciT130I | CCWGG | 1 cut(s) | 438 |
| BisI | GCNGC | 1 cut(s) | 67 |
| BlsI | GCNGC | 1 cut(s) | 68 |
| Bme1390I | CCNGG | 1 cut(s) | 438 |
| BmgT120I | GGNCC | 1 cut(s) | 139 |
| BmrFI | CCNGG | 1 cut(s) | 438 |
| BmsI | GCATC | 1 cut(s) | 247 |
| BpuEI | CTTGAG | 1 cut(s) | 179 |
| BsaAI | YACGTR | 1 cut(s) | 461 |
| BsaHI | GRCGYC | 1 cut(s) | 93 |
| BsaJI | CCNNGG | 1 cut(s) | 437 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 282 |
| Bse1I | ACTGG | 1 cut(s) | 300 |
| BseBI | CCWGG | 1 cut(s) | 438 |
| BseDI | CCNNGG | 1 cut(s) | 437 |
| BseGI | GGATG | 1 cut(s) | 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 282 |
| BseMII | CTCAG | 1 cut(s) | 308 |
| BseNI | ACTGG | 1 cut(s) | 300 |
| BseXI | GCAGC | 1 cut(s) | 53 |
| BshFI | GGCC | 3 cut(s) | 141, 176, 200 |
| BsiHKAI | GWGCWC | 1 cut(s) | 165 |
| BsiSI | CCGG | 1 cut(s) | 233 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 282 |
| BsnI | GGCC | 3 cut(s) | 141, 176, 200 |
| Bsp1286I | GDGCHC | 1 cut(s) | 165 |
| BspACI | CCGC | 1 cut(s) | 183 |
| BspANI | GGCC | 3 cut(s) | 141, 176, 200 |
| BspCNI | CTCAG | 1 cut(s) | 307 |
| BsrI | ACTGG | 1 cut(s) | 300 |
| BssECI | CCNNGG | 1 cut(s) | 437 |
| BssNI | GRCGYC | 1 cut(s) | 93 |
| Bst2UI | CCWGG | 1 cut(s) | 438 |
| Bst4CI | ACNGT | 2 cut(s) | 87, 277 |
| Bst6I | CTCTTC | 2 cut(s) | 220, 272 |
| BstACI | GRCGYC | 1 cut(s) | 93 |
| BstBAI | YACGTR | 1 cut(s) | 461 |
| BstDEI | CTNAG | 2 cut(s) | 157, 294 |
| BstF5I | GGATG | 1 cut(s) | 448 |
| BstHHI | GCGC | 1 cut(s) | 212 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 182 |
| BstNI | CCWGG | 1 cut(s) | 438 |
| BstSCI | CCNGG | 1 cut(s) | 436 |
| BstSNI | TACGTA | 1 cut(s) | 461 |
| BstV1I | GCAGC | 1 cut(s) | 53 |
| BsuRI | GGCC | 3 cut(s) | 141, 176, 200 |
| BtsCI | GGATG | 1 cut(s) | 448 |
| CfoI | GCGC | 1 cut(s) | 212 |
| Cfr13I | GGNCC | 1 cut(s) | 139 |
| CseI | GACGC | 1 cut(s) | 118 |
| Csp6I | GTAC | 1 cut(s) | 462 |
| CviAII | CATG | 1 cut(s) | 305 |
| CviJI | RGCY | 9 cut(s) | 66, 74, 106, 122, 141, 176, 200, 287, 320 |
| CviKI_1 | RGCY | 9 cut(s) | 66, 74, 106, 122, 141, 176, 200, 287, 320 |
| CviQI | GTAC | 1 cut(s) | 462 |
| DdeI | CTNAG | 2 cut(s) | 157, 294 |
| DraI | TTTAAA | 1 cut(s) | 369 |
| Eam1104I | CTCTTC | 2 cut(s) | 220, 272 |
| EarI | CTCTTC | 2 cut(s) | 220, 272 |
| Eco105I | TACGTA | 1 cut(s) | 461 |
| EcoRII | CCWGG | 1 cut(s) | 436 |
| FaeI | CATG | 1 cut(s) | 308 |
| FaiI | YATR | 4 cut(s) | 253, 306, 315, 341 |
| FatI | CATG | 1 cut(s) | 304 |
| FblI | GTMKAC | 1 cut(s) | 415 |
| Fnu4HI | GCNGC | 1 cut(s) | 67 |
| FokI | GGATG | 1 cut(s) | 455 |
| Fsp4HI | GCNGC | 1 cut(s) | 67 |
| GlaI | GCGC | 1 cut(s) | 211 |
| GluI | GCNGC | 1 cut(s) | 67 |
| HaeIII | GGCC | 3 cut(s) | 141, 176, 200 |
| HapII | CCGG | 1 cut(s) | 233 |
| HgaI | GACGC | 1 cut(s) | 118 |
| HhaI | GCGC | 1 cut(s) | 212 |
| Hin1I | GRCGYC | 1 cut(s) | 93 |
| Hin1II | CATG | 1 cut(s) | 308 |
| Hin6I | GCGC | 1 cut(s) | 210 |
| HinP1I | GCGC | 1 cut(s) | 210 |
| HindIII | AAGCTT | 1 cut(s) | 318 |
| HinfI | GANTC | 2 cut(s) | 236, 357 |
| HpaII | CCGG | 1 cut(s) | 233 |
| HphI | GGTGA | 1 cut(s) | 157 |
| Hpy166II | GTNNAC | 1 cut(s) | 416 |
| Hpy188I | TCNGA | 5 cut(s) | 102, 146, 190, 241, 297 |
| Hpy188III | TCNNGA | 1 cut(s) | 407 |
| Hpy8I | GTNNAC | 1 cut(s) | 416 |
| Hpy99I | CGWCG | 2 cut(s) | 95, 98 |
| HpyAV | CCTTC | 2 cut(s) | 28, 229 |
| HpyCH4III | ACNGT | 2 cut(s) | 87, 277 |
| HpyCH4IV | ACGT | 2 cut(s) | 93, 460 |
| HpyCH4V | TGCA | 2 cut(s) | 4, 308 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 182 |
| HpyF3I | CTNAG | 2 cut(s) | 157, 294 |
| HpySE526I | ACGT | 2 cut(s) | 93, 460 |
| Hsp92I | GRCGYC | 1 cut(s) | 93 |
| Hsp92II | CATG | 1 cut(s) | 308 |
| HspAI | GCGC | 1 cut(s) | 210 |
| LpnPI | CCDG | 8 cut(s) | 61, 236, 246, 268, 313, 423, 438, 450 |
| Lsp1109I | GCAGC | 1 cut(s) | 53 |
| LweI | GCATC | 1 cut(s) | 247 |
| MaeII | ACGT | 2 cut(s) | 93, 460 |
| MaeIII | GTNAC | 1 cut(s) | 373 |
| MboII | GAAGA | 2 cut(s) | 207, 259 |
| MhlI | GDGCHC | 1 cut(s) | 165 |
| MluCI | AATT | 3 cut(s) | 134, 402, 466 |
| MlyI | GAGTC | 1 cut(s) | 351 |
| MmeI | TCCRAC | 2 cut(s) | 106, 213 |
| MnlI | CCTC | 5 cut(s) | 152, 187, 196, 203, 223 |
| MseI | TTAA | 3 cut(s) | 42, 345, 368 |
| MspI | CCGG | 1 cut(s) | 233 |
| MspR9I | CCNGG | 1 cut(s) | 438 |
| MvaI | CCWGG | 1 cut(s) | 438 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 182 |
| NlaIII | CATG | 1 cut(s) | 308 |
| PfeI | GAWTC | 1 cut(s) | 236 |
| PkrI | GCNGC | 1 cut(s) | 68 |
| PleI | GAGTC | 1 cut(s) | 351 |
| PpsI | GAGTC | 1 cut(s) | 351 |
| Ppu21I | YACGTR | 1 cut(s) | 461 |
| Psp6I | CCWGG | 1 cut(s) | 436 |
| PspGI | CCWGG | 1 cut(s) | 436 |
| PspPI | GGNCC | 1 cut(s) | 139 |
| RsaI | GTAC | 1 cut(s) | 463 |
| RsaNI | GTAC | 1 cut(s) | 462 |
| SaqAI | TTAA | 3 cut(s) | 42, 345, 368 |
| SatI | GCNGC | 1 cut(s) | 67 |
| Sau96I | GGNCC | 1 cut(s) | 139 |
| SchI | GAGTC | 1 cut(s) | 351 |
| ScrFI | CCNGG | 1 cut(s) | 438 |
| SduI | GDGCHC | 1 cut(s) | 165 |
| SetI | ASST | 8 cut(s) | 20, 36, 68, 96, 108, 195, 322, 463 |
| SfaNI | GCATC | 1 cut(s) | 247 |
| SmlI | CTYRAG | 1 cut(s) | 194 |
| SmoI | CTYRAG | 1 cut(s) | 194 |
| SnaBI | TACGTA | 1 cut(s) | 461 |
| Sse9I | AATT | 3 cut(s) | 134, 402, 466 |
| SsiI | CCGC | 1 cut(s) | 183 |
| SspI | AATATT | 1 cut(s) | 8 |
| StyD4I | CCNGG | 1 cut(s) | 436 |
| TaaI | ACNGT | 2 cut(s) | 87, 277 |
| TaiI | ACGT | 2 cut(s) | 96, 463 |
| TasI | AATT | 3 cut(s) | 134, 402, 466 |
| TfiI | GAWTC | 1 cut(s) | 236 |
| Tru1I | TTAA | 3 cut(s) | 42, 345, 368 |
| Tru9I | TTAA | 3 cut(s) | 42, 345, 368 |
| TseI | GCWGC | 1 cut(s) | 66 |
| TspDTI | ATGAA | 2 cut(s) | 421, 459 |
| XapI | RAATTY | 1 cut(s) | 402 |
| XmiI | GTMKAC | 1 cut(s) | 415 |
| ZraI | GACGTC | 1 cut(s) | 94 |