Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002148.1

Orthogroup ID

OG0016322

Physical Location & Seq

Genomic Coordinates Reverse (-)

289 .. 799

Gene Structure 511 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002148.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 237 bp

atgaagcagccggcgaacggaggttcgtccggcgccgccgcactcaattccggcgaaggcggagagaacgtgaagatcataaacccggagctgtggcaggcctgcgccgggccgctggtgaacttgccgctggccgggacccacgtggtgtacttccccaggtgggtggttaatgccgtaggtggggctttgtgcttatcgtttcgagctgtcaagtatagtttgccttttgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009637 GO:0009638 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009785 GO:0009791 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010101 GO:0010102 GO:0010311 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0030522 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048527 GO:0048528 GO:0048646 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071483 GO:0080090 GO:0090696 GO:0090697 GO:0090698 GO:0097159 GO:0099402 GO:0104004 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

AUX_IAA Auxin_resp B3

Protein Analysis

78

Amino Acids

8.08

Weight (kDa)

8.77

Isoelectric Point (pI)

42.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016322)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36012
malus_domestica	MD12G1118100.v1.1
rosa_laevigata	RLG00000002728
rosa_multiflora	Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001
rosa_rugosa	Rorug06G0016500
rosa_samantha	Rh6BG397800 Rh6CG403800
rosa_wichuraiana	Rw1G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	32
AciI	CCGC	5 cut(s)	36, 39, 60, 113, 128
AcoI	YGGCCR	1 cut(s)	132
AcvI	CACGTG	1 cut(s)	145
AcyI	GRCGYC	1 cut(s)	33
AdeI	CACNNNGTG	1 cut(s)	148
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	5 cut(s)	17, 108, 134, 163, 183
AjnI	CCWGG	1 cut(s)	158
AluBI	AGCT	2 cut(s)	91, 209
AluI	AGCT	2 cut(s)	91, 209
AoxI	GGCC	3 cut(s)	99, 110, 132
ApeKI	GCWGC	1 cut(s)	7
AspLEI	GCGC	2 cut(s)	35, 107
AspS9I	GGNCC	2 cut(s)	110, 138
AsuC2I	CCSGG	3 cut(s)	86, 109, 136
AsuHPI	GGTGA	1 cut(s)	130
AvaII	GGWCC	1 cut(s)	138
BanI	GGYRCC	1 cut(s)	32
BbrPI	CACGTG	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	19
BceAI	ACGGC	1 cut(s)	161
BciT130I	CCWGG	1 cut(s)	160
BcnI	CCSGG	3 cut(s)	86, 109, 136
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	5 cut(s)	8, 36, 39, 113, 128
BlsI	GCNGC	5 cut(s)	9, 37, 40, 114, 129
Bme1390I	CCNGG	4 cut(s)	86, 109, 136, 160
Bme18I	GGWCC	1 cut(s)	138
BmgT120I	GGNCC	2 cut(s)	110, 138
BmiI	GGNNCC	3 cut(s)	34, 139, 140
BmrFI	CCNGG	4 cut(s)	86, 109, 136, 160
BpuMI	CCSGG	3 cut(s)	86, 109, 136
BsaAI	YACGTR	1 cut(s)	145
BsaHI	GRCGYC	1 cut(s)	33
BsaJI	CCNNGG	1 cut(s)	158
BsaXI	ACNNNNNCTCC	2 cut(s)	54, 84
Bsc4I	CCNNNNNNNGG	5 cut(s)	17, 108, 134, 163, 183
Bse118I	RCCGGY	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	160
BseDI	CCNNGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	5 cut(s)	17, 108, 134, 163, 183
BseXI	GCAGC	1 cut(s)	19
BshFI	GGCC	3 cut(s)	101, 112, 134
BshNI	GGYRCC	1 cut(s)	32
BsiSI	CCGG	6 cut(s)	11, 30, 51, 86, 108, 135
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	5 cut(s)	17, 108, 134, 163, 183
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	3 cut(s)	101, 112, 134
Bsp143I	GATC	1 cut(s)	75
BspACI	CCGC	5 cut(s)	36, 39, 60, 113, 128
BspANI	GGCC	3 cut(s)	101, 112, 134
BspLI	GGNNCC	3 cut(s)	34, 139, 140
BspT107I	GGYRCC	1 cut(s)	32
BsrFI	RCCGGY	1 cut(s)	10
BssAI	RCCGGY	1 cut(s)	10
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	75
BssNI	GRCGYC	1 cut(s)	33
Bst2UI	CCWGG	1 cut(s)	160
BstACI	GRCGYC	1 cut(s)	33
BstBAI	YACGTR	1 cut(s)	145
BstC8I	GCNNGC	4 cut(s)	12, 99, 103, 132
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	2 cut(s)	35, 107
BstKTI	GATC	1 cut(s)	78
BstMBI	GATC	1 cut(s)	75
BstNI	CCWGG	1 cut(s)	160
BstSCI	CCNGG	4 cut(s)	84, 107, 134, 158
BstV1I	GCAGC	1 cut(s)	19
BstXI	CCANNNNNNTGG	1 cut(s)	166
BsuRI	GGCC	3 cut(s)	101, 112, 134
Cac8I	GCNNGC	4 cut(s)	12, 99, 103, 132
CfoI	GCGC	2 cut(s)	35, 107
Cfr10I	RCCGGY	1 cut(s)	10
Cfr13I	GGNCC	2 cut(s)	110, 138
Csp6I	GTAC	1 cut(s)	151
CviJI	RGCY	7 cut(s)	10, 91, 101, 112, 134, 188, 209
CviKI_1	RGCY	7 cut(s)	10, 91, 101, 112, 134, 188, 209
CviQI	GTAC	1 cut(s)	151
DinI	GGCGCC	1 cut(s)	34
DpnI	GATC	1 cut(s)	77
DpnII	GATC	1 cut(s)	75
DraIII	CACNNNGTG	1 cut(s)	148
EaeI	YGGCCR	1 cut(s)	132
EciI	GGCGGA	1 cut(s)	75
Eco147I	AGGCCT	1 cut(s)	101
Eco47I	GGWCC	1 cut(s)	138
Eco72I	CACGTG	1 cut(s)	145
EcoO109I	RGGNCCY	1 cut(s)	138
EcoRII	CCWGG	1 cut(s)	158
EgeI	GGCGCC	1 cut(s)	34
EheI	GGCGCC	1 cut(s)	34
FaiI	YATR	3 cut(s)	80, 219, 235
FaqI	GGGAC	1 cut(s)	151
Fnu4HI	GCNGC	5 cut(s)	8, 36, 39, 113, 128
Fsp4HI	GCNGC	5 cut(s)	8, 36, 39, 113, 128
GlaI	GCGC	2 cut(s)	34, 106
GluI	GCNGC	5 cut(s)	8, 36, 39, 113, 128
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	101, 112, 134
HapII	CCGG	6 cut(s)	11, 30, 51, 86, 108, 135
HhaI	GCGC	2 cut(s)	35, 107
Hin1I	GRCGYC	1 cut(s)	33
Hin6I	GCGC	2 cut(s)	33, 105
HinP1I	GCGC	2 cut(s)	33, 105
HpaII	CCGG	6 cut(s)	11, 30, 51, 86, 108, 135
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	2 cut(s)	121, 151
Hpy8I	GTNNAC	2 cut(s)	121, 151
HpyAV	CCTTC	1 cut(s)	50
HpyCH4IV	ACGT	2 cut(s)	69, 144
HpySE526I	ACGT	2 cut(s)	69, 144
Hsp92I	GRCGYC	1 cut(s)	33
HspAI	GCGC	2 cut(s)	33, 105
KasI	GGCGCC	1 cut(s)	32
KflI	GGGWCCC	1 cut(s)	138
KroI	GCCGGC	1 cut(s)	10
KroNI	GCCGGC	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	75
LmnI	GCTCC	1 cut(s)	88
Lsp1109I	GCAGC	1 cut(s)	19
MaeII	ACGT	2 cut(s)	69, 144
MalI	GATC	1 cut(s)	77
MboI	GATC	1 cut(s)	75
MboII	GAAGA	1 cut(s)	85
MluCI	AATT	1 cut(s)	46
Mly113I	GGCGCC	1 cut(s)	33
MnlI	CCTC	1 cut(s)	14
MroNI	GCCGGC	1 cut(s)	10
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	2 cut(s)	115, 130
MspI	CCGG	6 cut(s)	11, 30, 51, 86, 108, 135
MspR9I	CCNGG	4 cut(s)	86, 109, 136, 160
MvaI	CCWGG	1 cut(s)	160
NaeI	GCCGGC	1 cut(s)	12
NarI	GGCGCC	1 cut(s)	33
NciI	CCSGG	3 cut(s)	86, 109, 136
NdeII	GATC	1 cut(s)	75
NgoMIV	GCCGGC	1 cut(s)	10
NlaIV	GGNNCC	3 cut(s)	34, 139, 140
PceI	AGGCCT	1 cut(s)	101
PdiI	GCCGGC	1 cut(s)	12
PkrI	GCNGC	5 cut(s)	9, 37, 40, 114, 129
PluTI	GGCGCC	1 cut(s)	36
PmaCI	CACGTG	1 cut(s)	145
PmlI	CACGTG	1 cut(s)	145
Ppu21I	YACGTR	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	138
Psp6I	CCWGG	1 cut(s)	158
PspCI	CACGTG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	34, 139, 140
PspPI	GGNCC	2 cut(s)	110, 138
PspPPI	RGGWCCY	1 cut(s)	138
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	5 cut(s)	8, 36, 39, 113, 128
Sau3AI	GATC	1 cut(s)	75
Sau96I	GGNCC	2 cut(s)	110, 138
ScrFI	CCNGG	4 cut(s)	86, 109, 136, 160
SetI	ASST	7 cut(s)	25, 72, 93, 147, 164, 184, 211
SfoI	GGCGCC	1 cut(s)	34
SinI	GGWCC	1 cut(s)	138
Sse9I	AATT	1 cut(s)	46
SseBI	AGGCCT	1 cut(s)	101
SsiI	CCGC	5 cut(s)	36, 39, 60, 113, 128
SspDI	GGCGCC	1 cut(s)	32
StuI	AGGCCT	1 cut(s)	101
StyD4I	CCNGG	4 cut(s)	84, 107, 134, 158
TaiI	ACGT	2 cut(s)	72, 147
TaqI	TCGA	1 cut(s)	205
TasI	AATT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	150
TauI	GCSGC	4 cut(s)	38, 41, 115, 130
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TseI	GCWGC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	33
VpaK11BI	GGWCC	1 cut(s)	138

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.