Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000898.1

Orthogroup ID

OG0016322

Physical Location & Seq

Genomic Coordinates Forward (+)

107798 .. 108739

Gene Structure 942 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000898.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

atggttaaaggtgaagtcttgcctaataaattcacctacccttttgttctcaaggcctatgccggcgtcggggacttgaatttggggaagtcgattcatgggtcggtggtgaaattcgggtttggtgatgatgtccatgttcagaacaccatggttcatatgtactgttgctacaatggagggattgaaagtgcacgaatggtgtttgatgaaatgcctaactgggtctctgtttcgtggagagcaatgattggagggtatgtgagggtagggtggtctagtgatgcggtggagttgtttaaggagatgcagatggcgggagtgaggacggatgagattactatggaggctgcaaatggtgctggctccaatcctacggggaaggtacttgcgctttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

133

Amino Acids

14.48

Weight (kDa)

5.86

Isoelectric Point (pI)

20.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016322)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g36012
malus_domestica	MD12G1118100.v1.1
rosa_laevigata	RLG00000002728
rosa_multiflora	Rmu_sc0000898.1_g000023 Rmu_sc0002148.1_g000001 Rmu_sc0002321.1_g000005 Rmu_sc0002989.1_g000006 Rmu_sc0002989.1_g000008 Rmu_sc0012179.1_g000004 Rmu_sc0032469.1_g000003 Rmu_sc0039735.1_g000001
rosa_rugosa	Rorug06G0016500
rosa_samantha	Rh6BG397800 Rh6CG403800
rosa_wichuraiana	Rw1G013540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	287, 317
AcsI	RAATTY	3 cut(s)	29, 79, 113
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	2 cut(s)	164, 387
AfiI	CCNNNNNNNGG	1 cut(s)	69
AgsI	TTSAA	2 cut(s)	79, 188
Alw21I	GWGCWC	1 cut(s)	196
Alw26I	GTCTC	1 cut(s)	232
Alw44I	GTGCAC	1 cut(s)	192
AoxI	GGCC	1 cut(s)	54
ApaLI	GTGCAC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	350
ApoI	RAATTY	3 cut(s)	29, 79, 113
AspLEI	GCGC	1 cut(s)	394
AsuHPI	GGTGA	4 cut(s)	23, 25, 121, 137
BaeGI	GKGCMC	1 cut(s)	196
Bbv12I	GWGCWC	1 cut(s)	196
BbvI	GCAGC	1 cut(s)	337
BccI	CCATC	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	232
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	351
BlsI	GCNGC	1 cut(s)	352
BmiI	GGNNCC	1 cut(s)	367
BmrI	ACTGGG	1 cut(s)	232
BmsI	GCATC	2 cut(s)	274, 297
BmuI	ACTGGG	1 cut(s)	232
BpuEI	CTTGAG	1 cut(s)	35
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	232
BsaJI	CCNNGG	1 cut(s)	150
BsaXI	ACNNNNNCTCC	2 cut(s)	246, 276
Bsc4I	CCNNNNNNNGG	1 cut(s)	69
Bse118I	RCCGGY	1 cut(s)	62
Bse1I	ACTGG	1 cut(s)	227
Bse3DI	GCAATG	1 cut(s)	252
BseDI	CCNNGG	1 cut(s)	150
BseGI	GGATG	1 cut(s)	337
BseLI	CCNNNNNNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	227
BseSI	GKGCMC	1 cut(s)	196
BseXI	GCAGC	1 cut(s)	337
BshFI	GGCC	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	69
BsmAI	GTCTC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	56
Bso31I	GGTCTC	1 cut(s)	232
Bsp1286I	GDGCHC	1 cut(s)	196
Bsp19I	CCATGG	1 cut(s)	150
BspACI	CCGC	2 cut(s)	287, 317
BspANI	GGCC	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	367
BspTNI	GGTCTC	1 cut(s)	232
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	227
BssAI	RCCGGY	1 cut(s)	62
BssECI	CCNNGG	1 cut(s)	150
BssNI	GRCGYC	1 cut(s)	66
BssT1I	CCWWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	167
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	359
BstC8I	GCNNGC	2 cut(s)	64, 364
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	1 cut(s)	337
BstHHI	GCGC	1 cut(s)	394
BstMAI	GTCTC	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	359
BstSLI	GKGCMC	1 cut(s)	196
BstV1I	GCAGC	1 cut(s)	337
BsuRI	GGCC	1 cut(s)	56
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	337
Cac8I	GCNNGC	2 cut(s)	64, 364
CfoI	GCGC	1 cut(s)	394
Cfr10I	RCCGGY	1 cut(s)	62
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	2 cut(s)	163, 386
CviAII	CATG	3 cut(s)	98, 137, 151
CviJI	RGCY	3 cut(s)	56, 350, 366
CviKI_1	RGCY	3 cut(s)	56, 350, 366
CviQI	GTAC	2 cut(s)	163, 386
Eco130I	CCWWGG	1 cut(s)	150
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	150
ErhI	CCWWGG	1 cut(s)	150
FaeI	CATG	3 cut(s)	101, 140, 154
FaiI	YATR	8 cut(s)	60, 99, 138, 152, 159, 161, 261, 344
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	3 cut(s)	97, 136, 150
FauI	CCCGC	1 cut(s)	310
FauNDI	CATATG	1 cut(s)	159
Fnu4HI	GCNGC	1 cut(s)	351
FokI	GGATG	1 cut(s)	344
Fsp4HI	GCNGC	1 cut(s)	351
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	393
GluI	GCNGC	1 cut(s)	351
HaeIII	GGCC	1 cut(s)	56
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	394
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	3 cut(s)	101, 140, 154
Hin6I	GCGC	1 cut(s)	392
HinP1I	GCGC	1 cut(s)	392
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	4 cut(s)	23, 25, 121, 137
Hpy166II	GTNNAC	1 cut(s)	194
Hpy188I	TCNGA	1 cut(s)	144
Hpy8I	GTNNAC	1 cut(s)	194
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	1 cut(s)	376
HpyCH4III	ACNGT	1 cut(s)	167
HpyCH4V	TGCA	3 cut(s)	194, 310, 353
HpyF10VI	GCNNNNNNNGC	1 cut(s)	359
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	3 cut(s)	101, 140, 154
HspAI	GCGC	1 cut(s)	392
KroI	GCCGGC	1 cut(s)	62
KroNI	GCCGGC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	371
LpnPI	CCDG	3 cut(s)	76, 208, 348
Lsp1109I	GCAGC	1 cut(s)	337
LweI	GCATC	2 cut(s)	274, 297
MaeI	CTAG	1 cut(s)	279
MhlI	GDGCHC	1 cut(s)	196
MluCI	AATT	3 cut(s)	29, 79, 113
MnlI	CCTC	5 cut(s)	173, 248, 258, 318, 340
MroNI	GCCGGC	1 cut(s)	62
MseI	TTAA	3 cut(s)	6, 300, 400
MspI	CCGG	1 cut(s)	63
MwoI	GCNNNNNNNGC	1 cut(s)	359
NaeI	GCCGGC	1 cut(s)	64
NcoI	CCATGG	1 cut(s)	150
NdeI	CATATG	1 cut(s)	159
NgoMIV	GCCGGC	1 cut(s)	62
NlaIII	CATG	3 cut(s)	101, 140, 154
NlaIV	GGNNCC	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	64
PfeI	GAWTC	1 cut(s)	94
PkrI	GCNGC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	367
RsaI	GTAC	2 cut(s)	164, 387
RsaNI	GTAC	2 cut(s)	163, 386
SaqAI	TTAA	3 cut(s)	6, 300, 400
SatI	GCNGC	1 cut(s)	351
SduI	GDGCHC	1 cut(s)	196
SetI	ASST	3 cut(s)	13, 38, 387
SfaNI	GCATC	2 cut(s)	274, 297
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
Sse9I	AATT	3 cut(s)	29, 79, 113
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	2 cut(s)	287, 317
SspMI	CTAG	1 cut(s)	279
StuI	AGGCCT	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	150
TaaI	ACNGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	92
TasI	AATT	3 cut(s)	29, 79, 113
TatI	WGTACW	1 cut(s)	162
TfiI	GAWTC	1 cut(s)	94
Tru1I	TTAA	3 cut(s)	6, 300, 400
Tru9I	TTAA	3 cut(s)	6, 300, 400
TseI	GCWGC	1 cut(s)	350
TspDTI	ATGAA	3 cut(s)	86, 146, 225
TspGWI	ACGGA	1 cut(s)	344
VneI	GTGCAC	1 cut(s)	192
XapI	RAATTY	3 cut(s)	29, 79, 113
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.