Rh6CG403800

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0016322
Physical Location & Seq
Reverse (-)
58970715 .. 58971254
540 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG403800.1

Sequence Viewer

Length: 540 bp
ATGCAATATTTCCAAACCCTGAAAAGAAGCAAGCTCATCATTAACACCAGAGAAGCAGAGCAGATCTGCTTGGCTCTACTCCAACTGTGCGACGTCGTTCCGAAGCTGACGCAAATCCAAGCCCACATTGTCAAATTGGGCCTCCGAAACAACCCCTTAGTGCTGACAAAGTTCGCCTCCACCGCCTCCGACCTCAAGGTCATTGACTACGCCTCTTCCTTCCTGTTCTCGCCGGATTCCGATACCCATTTATACGATGCGTTTCTCTTCAACACCATCATCAGGGCTTACGCTCAGACCAGTCATGCGAAGCATAAAGCTTTGTGCTTTTACAGAGTTATGGTTAAAGGTGAAGTCTTGCCTAATAAATTCACCTACCCTTTTGTTCTCAAGGCCTGTGCCGGAGTTGGGGACTTGAATTTGGGGAAGTCGGTTCATGGGTCGGTGGTGAAATTCGGGTTTGGTGATGATGTCCATGTTCGGAACACCATGGTTCATATGTACTGTTGCTGCGGTGGAGGGATTGAAAGTGCACGGAAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

180

Amino Acids

20.07

Weight (kDa)

9.18

Isoelectric Point (pI)

36.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 86 - 134 1.7e-07 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 197
AatII GACGTC 1 cut(s) 96
AciI CCGC 2 cut(s) 183, 513
AcsI RAATTY 3 cut(s) 368, 418, 452
AcyI GRCGYC 1 cut(s) 93
AfaI GTAC 1 cut(s) 503
AfiI CCNNNNNNNGG 2 cut(s) 282, 408
AgsI TTSAA 3 cut(s) 271, 418, 527
AluBI AGCT 3 cut(s) 34, 106, 320
AluI AGCT 3 cut(s) 34, 106, 320
Alw21I GWGCWC 1 cut(s) 535
Alw44I GTGCAC 1 cut(s) 531
AoxI GGCC 2 cut(s) 139, 393
ApaLI GTGCAC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 510
ApoI RAATTY 3 cut(s) 368, 418, 452
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 4 cut(s) 362, 364, 460, 476
BaeGI GKGCMC 1 cut(s) 535
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 1 cut(s) 497
BccI CCATC 1 cut(s) 284
BglII AGATCT 1 cut(s) 63
BisI GCNGC 1 cut(s) 511
BlsI GCNGC 1 cut(s) 512
BmgT120I GGNCC 1 cut(s) 139
BmsI GCATC 1 cut(s) 247
BpuEI CTTGAG 2 cut(s) 179, 374
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 489
Bsc4I CCNNNNNNNGG 2 cut(s) 282, 408
Bse1I ACTGG 1 cut(s) 300
BseDI CCNNGG 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 282, 408
BseMII CTCAG 1 cut(s) 308
BseNI ACTGG 1 cut(s) 300
BseSI GKGCMC 1 cut(s) 535
BseXI GCAGC 1 cut(s) 497
BshFI GGCC 2 cut(s) 141, 395
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 2 cut(s) 233, 402
BslFI GGGAC 1 cut(s) 425
BslI CCNNNNNNNGG 2 cut(s) 282, 408
BsmFI GGGAC 1 cut(s) 425
BsnI GGCC 2 cut(s) 141, 395
Bsp1286I GDGCHC 1 cut(s) 535
Bsp143I GATC 1 cut(s) 63
Bsp19I CCATGG 1 cut(s) 489
BspACI CCGC 2 cut(s) 183, 513
BspANI GGCC 2 cut(s) 141, 395
BspCNI CTCAG 1 cut(s) 307
BsrI ACTGG 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 489
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 489
Bst4CI ACNGT 2 cut(s) 87, 506
Bst6I CTCTTC 2 cut(s) 220, 272
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 2 cut(s) 157, 294
BstDSI CCRYGG 1 cut(s) 489
BstKTI GATC 1 cut(s) 66
BstMBI GATC 1 cut(s) 63
BstMWI GCNNNNNNNGC 1 cut(s) 182
BstSLI GKGCMC 1 cut(s) 535
BstV1I GCAGC 1 cut(s) 497
BstX2I RGATCY 1 cut(s) 63
BstYI RGATCY 1 cut(s) 63
BsuRI GGCC 2 cut(s) 141, 395
BtgI CCRYGG 1 cut(s) 489
Cac8I GCNNGC 1 cut(s) 32
Cfr13I GGNCC 1 cut(s) 139
CseI GACGC 1 cut(s) 118
Csp6I GTAC 1 cut(s) 502
CviAII CATG 4 cut(s) 305, 437, 476, 490
CviJI RGCY 8 cut(s) 34, 74, 106, 122, 141, 287, 320, 395
CviKI_1 RGCY 8 cut(s) 34, 74, 106, 122, 141, 287, 320, 395
CviQI GTAC 1 cut(s) 502
DdeI CTNAG 2 cut(s) 157, 294
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
Eam1104I CTCTTC 2 cut(s) 220, 272
EarI CTCTTC 2 cut(s) 220, 272
Eco130I CCWWGG 1 cut(s) 489
Eco147I AGGCCT 1 cut(s) 395
EcoT14I CCWWGG 1 cut(s) 489
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 4 cut(s) 308, 440, 479, 493
FaiI YATR 9 cut(s) 253, 306, 315, 341, 438, 477, 491, 498, 500
FaqI GGGAC 1 cut(s) 425
FatI CATG 4 cut(s) 304, 436, 475, 489
FauNDI CATATG 1 cut(s) 498
Fnu4HI GCNGC 1 cut(s) 511
Fsp4HI GCNGC 1 cut(s) 511
GluI GCNGC 1 cut(s) 511
HaeIII GGCC 2 cut(s) 141, 395
HapII CCGG 2 cut(s) 233, 402
HgaI GACGC 1 cut(s) 118
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 4 cut(s) 308, 440, 479, 493
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 236
HpaII CCGG 2 cut(s) 233, 402
HphI GGTGA 4 cut(s) 362, 364, 460, 476
Hpy166II GTNNAC 1 cut(s) 533
Hpy188I TCNGA 6 cut(s) 102, 146, 190, 241, 297, 483
Hpy8I GTNNAC 1 cut(s) 533
Hpy99I CGWCG 2 cut(s) 95, 98
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 87, 506
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 4, 533
HpyF10VI GCNNNNNNNGC 1 cut(s) 182
HpyF3I CTNAG 2 cut(s) 157, 294
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 4 cut(s) 308, 440, 479, 493
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 8 cut(s) 32, 61, 236, 246, 268, 313, 409, 415
Lsp1109I GCAGC 1 cut(s) 497
LweI GCATC 1 cut(s) 247
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 207, 259
MflI RGATCY 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 4 cut(s) 134, 368, 418, 452
MmeI TCCRAC 2 cut(s) 106, 213
MnlI CCTC 6 cut(s) 152, 187, 196, 203, 223, 512
MseI TTAA 2 cut(s) 42, 345
MspI CCGG 2 cut(s) 233, 402
MwoI GCNNNNNNNGC 1 cut(s) 182
NcoI CCATGG 1 cut(s) 489
NdeI CATATG 1 cut(s) 498
NdeII GATC 1 cut(s) 63
NlaIII CATG 4 cut(s) 308, 440, 479, 493
PceI AGGCCT 1 cut(s) 395
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 512
PspPI GGNCC 1 cut(s) 139
PsuI RGATCY 1 cut(s) 63
RsaI GTAC 1 cut(s) 503
RsaNI GTAC 1 cut(s) 502
SaqAI TTAA 2 cut(s) 42, 345
SatI GCNGC 1 cut(s) 511
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 139
SduI GDGCHC 1 cut(s) 535
SetI ASST 8 cut(s) 36, 96, 108, 195, 201, 322, 352, 377
SfaNI GCATC 1 cut(s) 247
SmlI CTYRAG 2 cut(s) 194, 389
SmoI CTYRAG 2 cut(s) 194, 389
Sse9I AATT 4 cut(s) 134, 368, 418, 452
SseBI AGGCCT 1 cut(s) 395
SsiI CCGC 2 cut(s) 183, 513
SspI AATATT 1 cut(s) 8
StuI AGGCCT 1 cut(s) 395
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 2 cut(s) 87, 506
TaiI ACGT 1 cut(s) 96
TasI AATT 4 cut(s) 134, 368, 418, 452
TatI WGTACW 1 cut(s) 501
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 42, 345
Tru9I TTAA 2 cut(s) 42, 345
TseI GCWGC 1 cut(s) 510
TspDTI ATGAA 2 cut(s) 425, 485
VneI GTGCAC 1 cut(s) 531
XapI RAATTY 3 cut(s) 368, 418, 452
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.