Rmu_sc0002989.1_g000006

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002989.1
OG0016322
Physical Location & Seq
Reverse (-)
20447 .. 20863
417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002989.1_g000006.1.cds

Sequence Viewer

Length: 417 bp
ctgaccaagtttgccgccaccgcctccaacctcaaagccattgaccacgcctattccttcctgttctcgccggattccgatacccatttatacgatgcgtttttcttcaacaccatcatcagggcttacgctcagaccggtcatgcgaagcataaatctttgcgcttttacaaagttatggttaaaggtgaagtcttgcctaataaatgcacctacccttttgttctcaaggcctatgccggcgtcggggacttgaatttggggaagtcggttcatgggtcggtggtgaaattcgggtttggtgatgatgtccatgttcggaacaccatggttcatatgtactgttgctgcagtggagggattgaaagtgcacgaaaggtgttggatgaagtgcctagctgggactctgtttcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

138

Amino Acids

15.28

Weight (kDa)

8.67

Isoelectric Point (pI)

35.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 15, 21
AcsI RAATTY 2 cut(s) 256, 290
AcyI GRCGYC 1 cut(s) 243
AfaI GTAC 1 cut(s) 341
AfiI CCNNNNNNNGG 2 cut(s) 120, 246
AgeI ACCGGT 1 cut(s) 137
AgsI TTSAA 3 cut(s) 109, 256, 365
AluBI AGCT 1 cut(s) 399
AluI AGCT 1 cut(s) 399
Alw21I GWGCWC 1 cut(s) 373
Alw44I GTGCAC 1 cut(s) 369
AoxI GGCC 1 cut(s) 231
ApaLI GTGCAC 1 cut(s) 369
ApeKI GCWGC 1 cut(s) 348
ApoI RAATTY 2 cut(s) 256, 290
AsiGI ACCGGT 1 cut(s) 137
AspLEI GCGC 1 cut(s) 165
AsuHPI GGTGA 3 cut(s) 200, 298, 314
BaeGI GKGCMC 1 cut(s) 373
Bbv12I GWGCWC 1 cut(s) 373
BbvI GCAGC 1 cut(s) 335
BccI CCATC 1 cut(s) 122
BfaI CTAG 1 cut(s) 396
BfmI CTRYAG 1 cut(s) 349
BisI GCNGC 2 cut(s) 15, 349
BlsI GCNGC 2 cut(s) 16, 350
BmsI GCATC 1 cut(s) 85
BpuEI CTTGAG 1 cut(s) 212
BsaHI GRCGYC 1 cut(s) 243
BsaJI CCNNGG 1 cut(s) 327
BsaWI WCCGGW 1 cut(s) 137
Bsc4I CCNNNNNNNGG 2 cut(s) 120, 246
Bse118I RCCGGY 2 cut(s) 137, 239
BseDI CCNNGG 1 cut(s) 327
BseGI GGATG 1 cut(s) 391
BseLI CCNNNNNNNGG 2 cut(s) 120, 246
BseMII CTCAG 1 cut(s) 146
BseSI GKGCMC 1 cut(s) 373
BseXI GCAGC 1 cut(s) 335
BseYI CCCAGC 1 cut(s) 399
BshFI GGCC 1 cut(s) 233
BshTI ACCGGT 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 373
BsiSI CCGG 3 cut(s) 71, 138, 240
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 2 cut(s) 120, 246
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 1 cut(s) 233
Bsp1286I GDGCHC 1 cut(s) 373
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 2 cut(s) 15, 21
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 145
BspHI TCATGA 1 cut(s) 413
BspMAI CTGCAG 1 cut(s) 353
BsrFI RCCGGY 2 cut(s) 137, 239
BssAI RCCGGY 2 cut(s) 137, 239
BssECI CCNNGG 1 cut(s) 327
BssNI GRCGYC 1 cut(s) 243
BssT1I CCWWGG 1 cut(s) 327
Bst4CI ACNGT 1 cut(s) 344
BstACI GRCGYC 1 cut(s) 243
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 132
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 1 cut(s) 391
BstHHI GCGC 1 cut(s) 165
BstMWI GCNNNNNNNGC 1 cut(s) 20
BstSFI CTRYAG 1 cut(s) 349
BstSLI GKGCMC 1 cut(s) 373
BstV1I GCAGC 1 cut(s) 335
BsuRI GGCC 1 cut(s) 233
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 1 cut(s) 391
BtsI GCAGTG 1 cut(s) 358
BtsIMutI CAGTG 1 cut(s) 358
Cac8I GCNNGC 1 cut(s) 241
CciI TCATGA 1 cut(s) 413
CfoI GCGC 1 cut(s) 165
Cfr10I RCCGGY 2 cut(s) 137, 239
CseI GACGC 1 cut(s) 232
Csp6I GTAC 1 cut(s) 340
CspAI ACCGGT 1 cut(s) 137
CviAII CATG 5 cut(s) 143, 275, 314, 328, 414
CviJI RGCY 4 cut(s) 38, 125, 233, 399
CviKI_1 RGCY 4 cut(s) 38, 125, 233, 399
CviQI GTAC 1 cut(s) 340
DdeI CTNAG 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 327
Eco147I AGGCCT 1 cut(s) 233
EcoT14I CCWWGG 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 327
FaeI CATG 5 cut(s) 146, 278, 317, 331, 417
FaqI GGGAC 1 cut(s) 263
FatI CATG 5 cut(s) 142, 274, 313, 327, 413
FauNDI CATATG 1 cut(s) 336
Fnu4HI GCNGC 2 cut(s) 15, 349
FokI GGATG 1 cut(s) 398
Fsp4HI GCNGC 2 cut(s) 15, 349
FspBI CTAG 1 cut(s) 396
GlaI GCGC 1 cut(s) 164
GluI GCNGC 2 cut(s) 15, 349
GsaI CCCAGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 233
HapII CCGG 3 cut(s) 71, 138, 240
HgaI GACGC 1 cut(s) 232
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 243
Hin1II CATG 5 cut(s) 146, 278, 317, 331, 417
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 74, 404
HpaII CCGG 3 cut(s) 71, 138, 240
HphI GGTGA 3 cut(s) 200, 298, 314
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 3 cut(s) 79, 135, 321
Hpy188III TCNNGA 1 cut(s) 414
Hpy8I GTNNAC 1 cut(s) 371
Hpy99I CGWCG 1 cut(s) 248
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4V TGCA 3 cut(s) 210, 351, 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 20
HpyF3I CTNAG 1 cut(s) 132
Hsp92I GRCGYC 1 cut(s) 243
Hsp92II CATG 5 cut(s) 146, 278, 317, 331, 417
HspAI GCGC 1 cut(s) 163
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
LpnPI CCDG 6 cut(s) 74, 84, 106, 151, 253, 385
Lsp1109I GCAGC 1 cut(s) 335
LweI GCATC 1 cut(s) 85
MaeI CTAG 1 cut(s) 396
MboII GAAGA 1 cut(s) 97
MhlI GDGCHC 1 cut(s) 373
MluCI AATT 2 cut(s) 256, 290
MlyI GAGTC 1 cut(s) 398
MmeI TCCRAC 2 cut(s) 51, 363
MnlI CCTC 3 cut(s) 34, 41, 350
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 1 cut(s) 183
MspI CCGG 3 cut(s) 71, 138, 240
MwoI GCNNNNNNNGC 1 cut(s) 20
NaeI GCCGGC 1 cut(s) 241
NcoI CCATGG 1 cut(s) 327
NdeI CATATG 1 cut(s) 336
NgoMIV GCCGGC 1 cut(s) 239
NlaIII CATG 5 cut(s) 146, 278, 317, 331, 417
PagI TCATGA 1 cut(s) 413
PceI AGGCCT 1 cut(s) 233
PdiI GCCGGC 1 cut(s) 241
PfeI GAWTC 1 cut(s) 74
PinAI ACCGGT 1 cut(s) 137
PkrI GCNGC 2 cut(s) 16, 350
PleI GAGTC 1 cut(s) 398
PpsI GAGTC 1 cut(s) 398
PspFI CCCAGC 1 cut(s) 399
PstI CTGCAG 1 cut(s) 353
RsaI GTAC 1 cut(s) 341
RsaNI GTAC 1 cut(s) 340
SaqAI TTAA 1 cut(s) 183
SatI GCNGC 2 cut(s) 15, 349
SchI GAGTC 1 cut(s) 398
SduI GDGCHC 1 cut(s) 373
SetI ASST 5 cut(s) 33, 190, 215, 381, 401
SfaNI GCATC 1 cut(s) 85
SfcI CTRYAG 1 cut(s) 349
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 2 cut(s) 256, 290
SseBI AGGCCT 1 cut(s) 233
SsiI CCGC 2 cut(s) 15, 21
SspMI CTAG 1 cut(s) 396
StuI AGGCCT 1 cut(s) 233
StyI CCWWGG 1 cut(s) 327
TaaI ACNGT 1 cut(s) 344
TasI AATT 2 cut(s) 256, 290
TatI WGTACW 1 cut(s) 339
TauI GCSGC 1 cut(s) 17
TfiI GAWTC 1 cut(s) 74
Tru1I TTAA 1 cut(s) 183
Tru9I TTAA 1 cut(s) 183
TscAI CASTG 1 cut(s) 358
TseI GCWGC 1 cut(s) 348
TspDTI ATGAA 4 cut(s) 263, 323, 402, 402
TspRI CASTG 1 cut(s) 358
VneI GTGCAC 1 cut(s) 369
XapI RAATTY 2 cut(s) 256, 290
XspI CTAG 1 cut(s) 396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.