Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Forward (+)

2958958 .. 2962923

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g05040.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTTCTCCAAGCAAGAGGAGAGAGATGGATGTCATGAAATTGATGATGAGTGACTATAATGTGGAGACAATAAATGATGGGCTCAATGAGTTCAATGTGGAATTCCATGGTCCAAAAGAAAGCATTTATGAAGGAGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATAGGATTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAACCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTCTATCCAAATCCATCAGATCCACTCAATGGTGATGCTGCATCATTGATGATGAAGGACCGAAAACTCTATGATCAGAAAGTGAAAGAGTATTGCGAAAAATATGCAAAGAAGGAACATATTGCTAATACTACACCAGAAGAAGAGAGTGGTGAGGAGAATATTAGTGATGAAGGAAGCGATTCGAGTGACGATGACATCGCTGGACATGCAGACCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

20.88

Weight (kDa)

4.44

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 142	1.5e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AclI	AACGTT	1 cut(s)	228
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	104, 150
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	2 cut(s)	97, 311
AluBI	AGCT	2 cut(s)	163, 238
AluI	AGCT	2 cut(s)	163, 238
Alw26I	GTCTC	2 cut(s)	62, 192
AlwI	GGATC	1 cut(s)	347
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	104, 150
Asp700I	GAANNNNTTC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	113, 391
AsuHPI	GGTGA	2 cut(s)	377, 497
AvaII	GGWCC	2 cut(s)	113, 391
BanII	GRGCYC	1 cut(s)	87
BbvI	GCAGC	1 cut(s)	358
BccI	CCATC	3 cut(s)	22, 74, 355
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	2 cut(s)	62, 192
BfmI	CTRYAG	1 cut(s)	195
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
Bme18I	GGWCC	2 cut(s)	113, 391
BmgT120I	GGNCC	2 cut(s)	113, 391
BmsI	GCATC	3 cut(s)	160, 358, 383
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse8I	GATNNNNATC	1 cut(s)	174
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	37, 220
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseRI	GAGGAG	3 cut(s)	34, 153, 503
BseXI	GCAGC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	2 cut(s)	62, 192
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	352, 406
Bsp19I	CCATGG	1 cut(s)	109
BspHI	TCATGA	2 cut(s)	36, 204
BspPI	GGATC	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	352, 406
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	1 cut(s)	330
Bst6I	CTCTTC	1 cut(s)	471
BstDEI	CTNAG	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	109
BstENI	CCTNNNNNAGG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	37, 220
BstKTI	GATC	2 cut(s)	355, 409
BstMAI	GTCTC	2 cut(s)	62, 192
BstMBI	GATC	2 cut(s)	352, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	545
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	358
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	517
BtsCI	GGATG	2 cut(s)	37, 220
CciI	TCATGA	2 cut(s)	36, 204
Cfr13I	GGNCC	2 cut(s)	113, 391
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	5 cut(s)	37, 110, 205, 276, 542
CviJI	RGCY	3 cut(s)	85, 163, 238
CviKI_1	RGCY	3 cut(s)	85, 163, 238
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	354, 408
DpnII	GATC	2 cut(s)	352, 406
DraI	TTTAAA	1 cut(s)	300
Eam1104I	CTCTTC	1 cut(s)	471
EarI	CTCTTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	2 cut(s)	113, 391
EcoNI	CCTNNNNNAGG	1 cut(s)	195
EcoRI	GAATTC	1 cut(s)	104
EcoT14I	CCWWGG	1 cut(s)	109
EcoT22I	ATGCAT	1 cut(s)	175
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	40, 113, 208, 279, 545
FalI	AAGNNNNNCTT	2 cut(s)	303, 335
FatI	CATG	5 cut(s)	36, 109, 204, 275, 541
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	44, 207
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
Hin1II	CATG	5 cut(s)	40, 113, 208, 279, 545
HinfI	GANTC	3 cut(s)	201, 280, 515
HphI	GGTGA	2 cut(s)	377, 497
Hpy188I	TCNGA	3 cut(s)	225, 352, 411
Hpy188III	TCNNGA	3 cut(s)	37, 167, 205
HpyAV	CCTTC	6 cut(s)	128, 201, 329, 382, 439, 500
HpyCH4III	ACNGT	1 cut(s)	330
HpyCH4IV	ACGT	1 cut(s)	228
HpyCH4V	TGCA	4 cut(s)	173, 374, 440, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	1 cut(s)	256
HpySE526I	ACGT	1 cut(s)	228
Hsp92II	CATG	5 cut(s)	40, 113, 208, 279, 545
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	2 cut(s)	352, 406
LmnI	GCTCC	1 cut(s)	160
LpnPI	CCDG	4 cut(s)	180, 228, 483, 522
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	3 cut(s)	160, 358, 383
MaeII	ACGT	1 cut(s)	228
MaeIII	GTNAC	2 cut(s)	53, 521
MalI	GATC	2 cut(s)	354, 408
MboI	GATC	2 cut(s)	352, 406
MboII	GAAGA	2 cut(s)	485, 488
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	4 cut(s)	41, 104, 150, 264
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	12, 131, 481
Mph1103I	ATGCAT	1 cut(s)	175
MroXI	GAANNNNTTC	1 cut(s)	514
MseI	TTAA	2 cut(s)	267, 299
MwoI	GCNNNNNNNGC	1 cut(s)	542
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	352, 406
NlaIII	CATG	5 cut(s)	40, 113, 208, 279, 545
NmuCI	GTSAC	2 cut(s)	53, 521
NsiI	ATGCAT	1 cut(s)	175
NspI	RCATGY	1 cut(s)	545
PagI	TCATGA	2 cut(s)	36, 204
PdmI	GAANNNNTTC	1 cut(s)	514
PfeI	GAWTC	2 cut(s)	201, 515
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
Psp1406I	AACGTT	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	113, 391
PsuI	RGATCY	1 cut(s)	352
SaqAI	TTAA	2 cut(s)	267, 299
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	352, 406
Sau96I	GGNCC	2 cut(s)	113, 391
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	4 cut(s)	165, 231, 240, 297
SfaNI	GCATC	3 cut(s)	160, 358, 383
SfcI	CTRYAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	113, 391
Sse9I	AATT	4 cut(s)	41, 104, 150, 264
SspI	AATATT	1 cut(s)	496
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	1 cut(s)	330
TaiI	ACGT	1 cut(s)	231
TaqI	TCGA	1 cut(s)	518
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	41, 104, 150, 264
TfiI	GAWTC	2 cut(s)	201, 515
Tru1I	TTAA	2 cut(s)	267, 299
Tru9I	TTAA	2 cut(s)	267, 299
TseFI	GTSAC	2 cut(s)	53, 521
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	2 cut(s)	53, 521
TspDTI	ATGAA	7 cut(s)	53, 147, 193, 209, 221, 401, 519
Van91I	CCANNNNNTGG	1 cut(s)	362
VpaK11BI	GGWCC	2 cut(s)	113, 391
XagI	CCTNNNNNAGG	1 cut(s)	195
XapI	RAATTY	2 cut(s)	104, 150
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	514
Zsp2I	ATGCAT	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.