Rh7DG141600

Belongs to the ubiquitin-conjugating enzyme family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008995
Physical Location & Seq
Reverse (-)
12140894 .. 12144777
3884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG141600.1

Sequence Viewer

Length: 453 bp
ATGATTATTGTGGTTTCAGGCATTTATGAAGGCGGAGTATGGAAAATTCGTGTGGAGCTTCCAGATGCATATCCATACAAGTCTCCTTCTATTGGCTTCATGAACAAGATTTTTCATCCGAACGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAATCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTCTATCCAAATCCATCAGACCCACTCAATGGTGATGCAGCGTCATTGATGATGAAGGACCGCAAACTGTACGATCAGAAAGTGAAAGAGTATTGTGAAAAATATGCAAAGAAGGAGCATATTACTAATACAACACCAGAAGAAGAAGAAAGTGGTGATGAGAATATTAGTGATGAAGGAAGTGTTTCGAGTGACGATGACATTGCTGGACATGCAGACCCGTAG

Protein Analysis

150

Amino Acids

16.83

Weight (kDa)

4.35

Isoelectric Point (pI)

39.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UQ_con PF00179 6 - 107 2.1e-34 Ubiquitin-conjugating enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 257
AciI CCGC 2 cut(s) 33, 289
AclI AACGTT 1 cut(s) 123
AcsI RAATTY 1 cut(s) 45
AfaI GTAC 1 cut(s) 299
AfiI CCNNNNNNNGG 2 cut(s) 92, 257
AgsI TTSAA 1 cut(s) 206
AluBI AGCT 2 cut(s) 58, 133
AluI AGCT 2 cut(s) 58, 133
Alw26I GTCTC 1 cut(s) 87
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 45
AseI ATTAAT 1 cut(s) 162
Asp700I GAANNNNTTC 1 cut(s) 412
AspS9I GGNCC 1 cut(s) 286
AsuHPI GGTGA 2 cut(s) 272, 395
AvaII GGWCC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 278
BccI CCATC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 413, 447
BcoDI GTCTC 1 cut(s) 87
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme18I GGWCC 1 cut(s) 286
BmgT120I GGNCC 1 cut(s) 286
BmsI GCATC 2 cut(s) 55, 253
BsaBI GATNNNNATC 1 cut(s) 69
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 257
Bse3DI GCAATG 1 cut(s) 429
Bse8I GATNNNNATC 1 cut(s) 69
BseGI GGATG 1 cut(s) 115
BseJI GATNNNNATC 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 92, 257
BseMI GCAATG 1 cut(s) 429
BseXI GCAGC 1 cut(s) 278
BslI CCNNNNNNNGG 2 cut(s) 92, 257
BsmAI GTCTC 1 cut(s) 87
Bsp143I GATC 1 cut(s) 301
BspACI CCGC 2 cut(s) 33, 289
BspHI TCATGA 1 cut(s) 99
BsrDI GCAATG 1 cut(s) 429
BssMI GATC 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 225, 297
BstDEI CTNAG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 1 cut(s) 304
BstMAI GTCTC 1 cut(s) 87
BstMBI GATC 1 cut(s) 301
BstMWI GCNNNNNNNGC 1 cut(s) 440
BstNSI RCATGY 1 cut(s) 443
BstV1I GCAGC 1 cut(s) 278
BtsCI GGATG 1 cut(s) 115
CciI TCATGA 1 cut(s) 99
Cfr13I GGNCC 1 cut(s) 286
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 298
CspCI CAANNNNNGTGG 2 cut(s) 207, 242
CviAII CATG 3 cut(s) 100, 171, 440
CviJI RGCY 3 cut(s) 58, 96, 133
CviKI_1 RGCY 3 cut(s) 58, 96, 133
CviQI GTAC 1 cut(s) 298
DdeI CTNAG 1 cut(s) 151
DpnI GATC 1 cut(s) 303
DpnII GATC 1 cut(s) 301
DraI TTTAAA 1 cut(s) 195
EciI GGCGGA 1 cut(s) 48
Eco47I GGWCC 1 cut(s) 286
EcoT22I ATGCAT 1 cut(s) 70
FaeI CATG 3 cut(s) 103, 174, 443
FaiI YATR 9 cut(s) 27, 40, 70, 76, 101, 172, 333, 348, 441
FalI AAGNNNNNCTT 2 cut(s) 198, 230
FatI CATG 3 cut(s) 99, 170, 439
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
HgaI GACGC 1 cut(s) 258
Hin1II CATG 3 cut(s) 103, 174, 443
HinfI GANTC 1 cut(s) 175
HphI GGTGA 2 cut(s) 272, 395
Hpy188I TCNGA 3 cut(s) 120, 247, 306
Hpy188III TCNNGA 2 cut(s) 62, 100
HpyAV CCTTC 6 cut(s) 23, 96, 224, 277, 334, 398
HpyCH4III ACNGT 2 cut(s) 225, 297
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 4 cut(s) 68, 266, 335, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 440
HpyF3I CTNAG 1 cut(s) 151
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 3 cut(s) 103, 174, 443
Kzo9I GATC 1 cut(s) 301
LmnI GCTCC 2 cut(s) 55, 343
LpnPI CCDG 5 cut(s) 3, 75, 123, 378, 420
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 2 cut(s) 55, 253
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 419
MalI GATC 1 cut(s) 303
MboI GATC 1 cut(s) 301
MboII GAAGA 3 cut(s) 380, 383, 386
MluCI AATT 2 cut(s) 45, 159
MlyI GAGTC 1 cut(s) 184
Mph1103I ATGCAT 1 cut(s) 70
MroXI GAANNNNTTC 1 cut(s) 412
MseI TTAA 2 cut(s) 162, 194
MwoI GCNNNNNNNGC 1 cut(s) 440
NdeII GATC 1 cut(s) 301
NlaIII CATG 3 cut(s) 103, 174, 443
NmuCI GTSAC 1 cut(s) 419
NsiI ATGCAT 1 cut(s) 70
NspI RCATGY 1 cut(s) 443
PagI TCATGA 1 cut(s) 99
PdmI GAANNNNTTC 1 cut(s) 412
PflMI CCANNNNNTGG 1 cut(s) 257
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 183
PpsI GAGTC 1 cut(s) 183
PshBI ATTAAT 1 cut(s) 162
Psp1406I AACGTT 1 cut(s) 123
PspPI GGNCC 1 cut(s) 286
RsaI GTAC 1 cut(s) 299
RsaNI GTAC 1 cut(s) 298
SaqAI TTAA 2 cut(s) 162, 194
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 301
Sau96I GGNCC 1 cut(s) 286
SchI GAGTC 1 cut(s) 184
SetI ASST 4 cut(s) 60, 126, 135, 192
SfaNI GCATC 2 cut(s) 55, 253
SinI GGWCC 1 cut(s) 286
Sse9I AATT 2 cut(s) 45, 159
SsiI CCGC 2 cut(s) 33, 289
SspI AATATT 1 cut(s) 394
TaaI ACNGT 2 cut(s) 225, 297
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 416
TasI AATT 2 cut(s) 45, 159
Tru1I TTAA 2 cut(s) 162, 194
Tru9I TTAA 2 cut(s) 162, 194
TseFI GTSAC 1 cut(s) 419
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 6 cut(s) 42, 88, 104, 116, 296, 417
Van91I CCANNNNNTGG 1 cut(s) 257
VpaK11BI GGWCC 1 cut(s) 286
VspI ATTAAT 1 cut(s) 162
XapI RAATTY 1 cut(s) 45
XceI RCATGY 1 cut(s) 443
XmnI GAANNNNTTC 1 cut(s) 412
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.