Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008995

Physical Location & Seq

Genomic Coordinates Reverse (-)

27664855 .. 27668843

Gene Structure 3989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1184400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCTTCACCAAGCAAGCGGAGAGAGATGGATGTCATGAAGTTGATGATGAGTGACTATAATGTGGAGACAATAAATGATGGGCTGAATGAATTCAATGTGGAATTCCATGGTCCGAAAGAAAGCCTTTATGAAGGAGGGGTTTGGAAAATCCGTGTTGAGCTTCCGGATGCTTATCCATATAAATCTCCTTCTATTGGCTTCATGAACAAGATTTTCCACCCTAATGTTGATGAGCTATCTGGTTCTGTCTGCTTAGATGTAATTAACCAATCATGGAGTCCAATGTTTGACCTTTTAAATGTTTTTGAAGTTTTCCTTCCACAACTGTTGCTTTATCCAAATCCTTCAGATCCACTCAACGGTGATGCAGCGTCATTGATGATGAAGGACCGAAAACTCTACGATCAGAAGGTCAAAGAGTACTGCGAGCGATATGCAAAGAAGGAGCACATTACCAATACAACACCAGACGAGGAGAGCGATGATGAGAACATTAGTGATGAGGAAAGCAATTCAAGCGACGATGACATTGCTGGACATGCAGACCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

185

Amino Acids

21.04

Weight (kDa)

4.39

Isoelectric Point (pI)

46.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	10 - 142	1.3e-40	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008995)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46030 AT2G46030 AT2G46030 AT2G46030
fragaria_vesca	FvH4_5g05040
malus_domestica	MD00G1171400.v1.1 MD06G1177800.v1.1 MD06G1179100.v1.1 MD14G1184400.v1.1
prunus_persica	Prupe.5G177000_v2.0.a1
pyrus_communis	pycom06g15820 pycom14g15340
rosa_chinensis	RchiOBHm_Chr7g0194001
rosa_laevigata	RLG00000004224
rosa_multiflora	Rmu_sc0033848.1_g000001
rosa_roxburghii	Rroxscaffold_3G00261630
rosa_rugosa	Rorug07G0013100
rosa_samantha	Rh7AG140300 Rh7BG140800 Rh7CG144300 Rh7DG141600
rosa_wichuraiana	Rw7G011970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	166
AciI	CCGC	1 cut(s)	19
AclWI	GGATC	1 cut(s)	347
AcsI	RAATTY	2 cut(s)	92, 104
AcuI	CTGAAG	1 cut(s)	333
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	197, 362
AgsI	TTSAA	3 cut(s)	97, 311, 519
AluBI	AGCT	2 cut(s)	163, 238
AluI	AGCT	2 cut(s)	163, 238
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	1 cut(s)	62
AlwI	GGATC	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	166
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	2 cut(s)	92, 104
Asp700I	GAANNNNTTC	1 cut(s)	92
AspS9I	GGNCC	2 cut(s)	113, 391
AsuHPI	GGTGA	1 cut(s)	377
AvaII	GGWCC	2 cut(s)	113, 391
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	1 cut(s)	383
BccI	CCATC	2 cut(s)	22, 74
BcgI	CGANNNNNNTGC	4 cut(s)	419, 453, 515, 549
BcoDI	GTCTC	1 cut(s)	62
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmcAI	AGTACT	1 cut(s)	425
Bme18I	GGWCC	2 cut(s)	113, 391
BmgT120I	GGNCC	2 cut(s)	113, 391
BmsI	GCATC	2 cut(s)	160, 358
BsaBI	GATNNNNATC	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	109
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	2 cut(s)	197, 362
Bse3DI	GCAATG	1 cut(s)	531
Bse8I	GATNNNNATC	1 cut(s)	174
BseAI	TCCGGA	1 cut(s)	166
BseDI	CCNNGG	1 cut(s)	109
BseGI	GGATG	2 cut(s)	37, 175
BseJI	GATNNNNATC	1 cut(s)	174
BseLI	CCNNNNNNNGG	2 cut(s)	197, 362
BseMI	GCAATG	1 cut(s)	531
BseRI	GAGGAG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	383
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	167
BslI	CCNNNNNNNGG	2 cut(s)	197, 362
BsmAI	GTCTC	1 cut(s)	62
Bsp1286I	GDGCHC	1 cut(s)	453
Bsp13I	TCCGGA	1 cut(s)	166
Bsp143I	GATC	2 cut(s)	352, 406
Bsp19I	CCATGG	1 cut(s)	109
BspACI	CCGC	1 cut(s)	19
BspEI	TCCGGA	1 cut(s)	166
BspHI	TCATGA	2 cut(s)	36, 204
BspPI	GGATC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	531
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	352, 406
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	330, 365
BstC8I	GCNNGC	2 cut(s)	17, 431
BstDEI	CTNAG	1 cut(s)	256
BstDSI	CCRYGG	1 cut(s)	109
BstF5I	GGATG	2 cut(s)	37, 175
BstKTI	GATC	2 cut(s)	355, 409
BstMAI	GTCTC	1 cut(s)	62
BstMBI	GATC	2 cut(s)	352, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	519, 542
BstNSI	RCATGY	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	383
BstX2I	RGATCY	1 cut(s)	352
BstYI	RGATCY	1 cut(s)	352
BtgI	CCRYGG	1 cut(s)	109
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	37, 175
Cac8I	GCNNGC	2 cut(s)	17, 431
CciI	TCATGA	2 cut(s)	36, 204
Cfr13I	GGNCC	2 cut(s)	113, 391
CseI	GACGC	1 cut(s)	363
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	312, 347
CviAII	CATG	5 cut(s)	37, 110, 205, 276, 542
CviJI	RGCY	5 cut(s)	85, 126, 163, 201, 238
CviKI_1	RGCY	5 cut(s)	85, 126, 163, 201, 238
CviQI	GTAC	1 cut(s)	424
DdeI	CTNAG	1 cut(s)	256
DpnI	GATC	2 cut(s)	354, 408
DpnII	GATC	2 cut(s)	352, 406
DraI	TTTAAA	1 cut(s)	300
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	113, 391
Eco57I	CTGAAG	1 cut(s)	333
EcoRI	GAATTC	2 cut(s)	92, 104
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	5 cut(s)	40, 113, 208, 279, 545
FalI	AAGNNNNNCTT	4 cut(s)	111, 143, 303, 335
FatI	CATG	5 cut(s)	36, 109, 204, 275, 541
Fnu4HI	GCNGC	1 cut(s)	372
FokI	GGATG	2 cut(s)	44, 182
Fsp4HI	GCNGC	1 cut(s)	372
GluI	GCNGC	1 cut(s)	372
HapII	CCGG	1 cut(s)	167
HgaI	GACGC	1 cut(s)	363
Hin1II	CATG	5 cut(s)	40, 113, 208, 279, 545
HinfI	GANTC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	167
HphI	GGTGA	1 cut(s)	377
Hpy188I	TCNGA	3 cut(s)	117, 352, 411
Hpy188III	TCNNGA	3 cut(s)	37, 167, 205
Hpy99I	CGWCG	1 cut(s)	527
HpyAV	CCTTC	7 cut(s)	128, 201, 329, 357, 382, 406, 439
HpyCH4III	ACNGT	2 cut(s)	330, 365
HpyCH4V	TGCA	3 cut(s)	371, 440, 545
HpyF10VI	GCNNNNNNNGC	2 cut(s)	519, 542
HpyF3I	CTNAG	1 cut(s)	256
Hsp92II	CATG	5 cut(s)	40, 113, 208, 279, 545
Kpn2I	TCCGGA	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	352, 406
LmnI	GCTCC	1 cut(s)	448
LpnPI	CCDG	4 cut(s)	180, 228, 483, 522
Lsp1109I	GCAGC	1 cut(s)	383
LweI	GCATC	2 cut(s)	160, 358
MaeIII	GTNAC	1 cut(s)	53
MalI	GATC	2 cut(s)	354, 408
MboI	GATC	2 cut(s)	352, 406
MflI	RGATCY	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	453
MluCI	AATT	4 cut(s)	92, 104, 264, 514
MlyI	GAGTC	1 cut(s)	289
MnlI	CCTC	3 cut(s)	131, 469, 499
MroI	TCCGGA	1 cut(s)	166
MroXI	GAANNNNTTC	1 cut(s)	92
MseI	TTAA	2 cut(s)	267, 299
MslI	CAYNNNNRTG	1 cut(s)	225
MspI	CCGG	1 cut(s)	167
MwoI	GCNNNNNNNGC	2 cut(s)	519, 542
NcoI	CCATGG	1 cut(s)	109
NdeII	GATC	2 cut(s)	352, 406
NlaIII	CATG	5 cut(s)	40, 113, 208, 279, 545
NmuCI	GTSAC	1 cut(s)	53
NspI	RCATGY	1 cut(s)	545
PagI	TCATGA	2 cut(s)	36, 204
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdmI	GAANNNNTTC	1 cut(s)	92
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	288
PpsI	GAGTC	1 cut(s)	288
PspPI	GGNCC	2 cut(s)	113, 391
PsuI	RGATCY	1 cut(s)	352
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
RseI	CAYNNNNRTG	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	267, 299
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	352, 406
Sau96I	GGNCC	2 cut(s)	113, 391
ScaI	AGTACT	1 cut(s)	425
SchI	GAGTC	1 cut(s)	289
SduI	GDGCHC	1 cut(s)	453
SetI	ASST	4 cut(s)	165, 240, 297, 417
SfaNI	GCATC	2 cut(s)	160, 358
SinI	GGWCC	2 cut(s)	113, 391
SmiMI	CAYNNNNRTG	1 cut(s)	225
Sse9I	AATT	4 cut(s)	92, 104, 264, 514
SsiI	CCGC	1 cut(s)	19
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	330, 365
TaqII	GACCGA	1 cut(s)	408
TasI	AATT	4 cut(s)	92, 104, 264, 514
TatI	WGTACW	1 cut(s)	423
Tru1I	TTAA	2 cut(s)	267, 299
Tru9I	TTAA	2 cut(s)	267, 299
TseFI	GTSAC	1 cut(s)	53
TseI	GCWGC	1 cut(s)	371
Tsp45I	GTSAC	1 cut(s)	53
TspDTI	ATGAA	6 cut(s)	53, 105, 147, 193, 221, 401
TspGWI	ACGGA	1 cut(s)	143
VpaK11BI	GGWCC	2 cut(s)	113, 391
XapI	RAATTY	2 cut(s)	92, 104
XceI	RCATGY	1 cut(s)	545
XmnI	GAANNNNTTC	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.